RNA id: XM_021594286.2


Basic Information

Item Value
RNA id XM_021594286.2
length 858
RNA type mRNA
GC content 0.55
exon number 4
gene id vmo1b
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25162240 ~ 25165365 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCACTGCCTTTGTTCCATCCCTTCTGTGGATGAGACTGACTTCTGTCAACATGACTACCCCTCTTTTCACTGCTCTGTCCTTCCTGGCTGTGCTGGCCCTTGGGTCATGTCTAGCTCTCTTGCCCGAGGAGCAGCCCTATGTGGAGCGTGCTGGTATCCAATACAGCGCTAGGCCTTacacctccctcctcaccgtGCCCAATGGAGAGCAGTTTGGGAACTGGACCTGGCCCGAGATGTGTCCCGACAAGTTCTTCGCCGTTGGGTTCATGCTCCGGGTGGAGTCTGAACAGTACGGTCTGGACGACACTGCCCTGAATGGCATTCGCTTGATCTGCGCTAAGGACGAAGATAGGAGCTTCTTGTACACCATTGAGTCTCACACTGGATTctTTGGTGACTGGTCGGACCCCCAGTATTGCCCCAGGGGTGTGCTGACTTCCTTCCAGCTGCGTGTGGAGCCCCACCAGGGTCTGTTCGGTGACGACACAGCCGCCAACAACGTCAGGTTCCGCTGCAGCAGCAACCCCACCCTCGCAGGCGCCGGCCTGGACTACGGTGAGTACAGCCTCTGGAGCCAGGATTGTGGCGATGGAGGAATCTGTGGCATCGAGACCAAGATGGAGGAATACCAGTACGGTCTGGATGACTCATCTCTCAATGACGTGCGCTTCCACTGCTGCGCCAAACTCCAGCAGTAATCATCTGAGGGAGATACCTCTTCTGGACCAATCTCAACCAACCAACTGGCCCAGGACCTGTCAACACACAGGCTCTGACCCATGGTCCATTCAATCCAATCTACACCCAATATCTGAATCTGCCACTGGTTAAAACCTAATAAATCATTCAACTGTC

Function

GO:

id name namespace
GO:0030704 vitelline membrane formation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272542 lncRNA upstream 14495 25147495 ~ 25147745 (+) True G238506
TU272231 lncRNA upstream 28999 25133040 ~ 25133241 (+) True G238246
TU272230 lncRNA upstream 31146 25130591 ~ 25131094 (+) True LOC110505167
TU272223 lncRNA upstream 35563 25126361 ~ 25126677 (+) True G238243
TU272170 lncRNA upstream 36843 25125077 ~ 25125397 (+) True G238199
TU272555 lncRNA downstream 9425 25174790 ~ 25175404 (+) True G238519
TU272557 lncRNA downstream 10969 25176334 ~ 25176607 (+) True G238521
TU272561 lncRNA downstream 13419 25178784 ~ 25179166 (+) True G238524
TU272562 lncRNA downstream 14222 25179587 ~ 25179819 (+) True G238525
TU272565 lncRNA downstream 16995 25182360 ~ 25182791 (+) True G238528
XR_005042063.1 mRNA upstream 1090 25156376 ~ 25161150 (+) False LOC110515374
XR_005042061.1 mRNA upstream 1090 25156382 ~ 25161150 (+) False LOC110515374
XM_036973108.1 mRNA upstream 2467 25158273 ~ 25159773 (+) False LOC110515374
XM_021594294.2 mRNA upstream 2467 25158621 ~ 25159773 (+) True LOC110515374
XM_036963272.1 mRNA upstream 14934 25137772 ~ 25147306 (+) False LOC100136302
XM_036973158.1 mRNA downstream 97508 25262873 ~ 25270428 (+) True LOC110515419
XM_036973175.1 mRNA downstream 110038 25275403 ~ 25335823 (+) False LOC110515430
XM_036973178.1 mRNA downstream 110047 25275412 ~ 25335823 (+) False LOC110515430
XM_021594340.2 mRNA downstream 110061 25275426 ~ 25335823 (+) False LOC110515430
XM_036973177.1 mRNA downstream 110427 25275792 ~ 25335823 (+) True LOC110515430
TU272008 other upstream 386295 24775279 ~ 24775945 (+) True G238050
TU272005 other upstream 395877 24765666 ~ 24766363 (+) True G238047
TU271992 other upstream 411857 24749405 ~ 24750383 (+) True G238034
TU270587 other upstream 1106573 24055319 ~ 24055667 (+) True G236753
TU270506 other upstream 1233153 23908750 ~ 23929087 (+) True LOC110514733
TU272577 other downstream 29922 25195287 ~ 25199234 (+) True G238540
TU273162 other downstream 375404 25540769 ~ 25541613 (+) True G239026
TU273930 other downstream 1048277 26213642 ~ 26220183 (+) True G239697
TU273986 other downstream 1162043 26327408 ~ 26328331 (+) False G239752
TU273987 other downstream 1162043 26327408 ~ 26328025 (+) True G239752

Expression Profile