RNA id: XM_036973147.1


Basic Information

Item Value
RNA id XM_036973147.1
length 6032
RNA type mRNA
GC content 0.46
exon number 11
gene id LOC110515384
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25171287 ~ 25236536 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgagtgagtgaaagagagtgagagggaaagatAGAGGGGCGGAGGGGCTGCGCCGAACAGAGGTTGGGTCAGAGCGCTCCGTCGCTTCAGACAatcacaagagagagagagggaggttgataTGTGACAGGATGTGGTTTCCCTGAGCTTGCAGAACATAGCCGAGGCATACTTTGAGCATGACTTAAACGCACGCGCTCAAAGTGTTTGCTGCGCACGGTTAGCTAGTGAGCCTCTAGCGAGGATAGAACAAGCTGGCGGAGCTACTGATCCCATCCAGATTTGATTCTTCTCACTGTCTTTTTTCCCTCATTTGACCGAAAGCCTCCGTTCGAGCTGTATCGGCAGGACCTGAGTGAAGAATCGCAGAGGATCTGAGCGTGGACTGTTGCGCTGTGCTGTTCTGCTGTCAGTAGAATGTGTGTGATTGTTGGAGGAGCCGTTCCAGTGGCTTTCTCTTGATCTCAACAGTGAACTTTCCAAATCCTGTAGTCAACAGCTTCTGATCAGGTAGGGTCCACACACACTCTGGGGAGATGGGCTGTGGACTGAGGAAGCTGAAGCCATCAGAGGAGAGCAGTCCAGGGAAGATCTACTCCACCCTGAAGAGACCACAGGTGGAGACCAAGGTGGGCGTGGCCTACACATACCAATACGTCGACTTCCTCGTCGGGAAATACGATGGCTCATCTACACTGTGTCTTTCGTCTGTGCGGGAGCTCCCAGCCCAGCTCCAGGACCTGTACCAGCAGGGCTTCTCCCTGGTTGCCGTTCACCCCTTCATTCATCCCTGTGGTTCCAACGCAGTCAGCCCCCAGCACCAGCTCTACAGGGCCGTGCTGATCCGACTCGATGATGGGTTGGAGAAGAGCCAGTCGAGCTGTGCTCCCTACCGTCTGCAGCTGGAGCAGTGTCTGTCTACCGACCAGGTGCCCACCCCTGAGCTCATCCAGGGCTATGTCAAGAAGCAGATCCAGGAGGCTGCAGACCAGGGGGTCATGTTTGTGGGCTTCATCCAGGAGCCGTGTGGGGTACGAGGTACCCAGACCAGAGAACCAGAGacgccctccctctccctccactccagcCCCAGTTCCGTGCTAGGCTCCCTGAGCAGCCGAAGCCCCACTAGCCCCCGGACCAATGGAGAACCAGGAGCCCAGGAGCAGGCGATGGACACTGGGGGCGATGAGGACCAAGGCTCCTTATGTAagggtggggagggggaggaccaGACTCGGGACACGGGGGGGAGTGAGACTGCTGTCGGGGAAAGCAACCATGATGGGAGGTCCTCTCTTCCCATAACACCATCCACAGAGAGCGAGCAAGATCATGATCAGGATGTTATAGTggaagacacactgacacacaacaATAACAAGACAAACTTTGTGGAACTGAAGGAGAAACCAAGCTGTCACACTCAGAGAGCCAGTGGGGTGGAGCTGCTAGCCCTGTTCAACCACCCAACTGACCGTGAGGGCCAACTGAAGTACTACACTGGGAAGGTACCGCTGAGGGTTCAACTCCGTGACGAGGGGGTCAAAGGGGTGGAGGCCAACTGGCTGGATCACATGACTCAGCACTTCAACAACGGGGCCTCGCTCGTTGATGGATACTTCCACCTGGGCAACGACAACGATTTGCAGCCTAAGTCGGTGGAAAGCGTCTTCATCTTCCAGGAGGGGACGGAGGGCGGCGACCAGAGCGTGACCACCACGTACGACGCCATCGTTGTGGAGCAGTGGACTGTCATTGACGGCCTGCAGGTGAAGACAGACTATGTTCCCCTGCTCCAGTCTCTTGCCATGTACGGTTGGAGACTCACGTGTGTGCTGCCTACACCCATCATCAAGACCAACAGTGATGGAAGTTTGGCCACCAAGCAGGTCGTTTTTCTTCAGAGACCTGTCCTTCCCCGCAAGAGGGGGGACTCCAAGAAACTGATATTCAAAAGCAAGGCCAACAAGAACTCTGTTAAAGACGCGTCaaaaaacaagaagaagaagaagaaaaacaagcAATCGGCAGCAGAGAAAGATCTGGAAGAGTCCAAGGTTCTTGACGACGGGGAAAAGGTGGTCAAAGAGAGCAGGAACGTGAAGGAAAACAAGGGGAGCGAagaggagacagtgaaagagacggAGGTAGAGGCTGTGTGTAAAGAGGCGGAGACTGTGTGTAAAGAGGCGGAGACTCCCTGTgaagtggaggaagaggaaaagGTTGAGGCAGAAACTGAGGAAGGGGTAGAaactgggaaggagagagatggagctgcAGGAAAAGATGACAAGAGTGACAaagaggggagagtggaggaaggagaaggagcaGGGTCAGAGACTGAGCAGgaaagacggggagagagagaaaatgtgctGGCAATTGATGATGAAACCGAAATTATCAAGGGttcagaggtggaggtggagaccaAAGAACAAGGGCagaaagaggagaaagggggaggagctgGAATGGAAGTGAAGGAACATGGGGTTGAGACTAAAGAAGAGACAAATGGAAGGGAAGAAAATGGAGAAACGGAGAATGTTGCCATGCAACAAGACCCACCTGACCAGGAAGAACATGTAGTGCAGGAAGAGGTGCAAAAGGTAGTAAAGGAGGATGGACAGGTCAAATTGACCAATCAATGCCCTGAAGAGAGTCAAAGGTCTGATGTGTAAACCTCTTCAGACATCACACCTAAGGGTTCTCCTACCCATCATTCATGTACCTACCAAACATCATAACCTGAGATAGGGGCTCCAGAAAGTCACCATTGAACAGCCTATATTGCAGCAACATCCTCCTACCATGTAGTCActctatcctctgcagcagacatctCTCCACAACGGACACATCTCTACCACAGATGGACACGCACCAGTCTCTCTCACAGCCTCAGACTGATACCACAGATGGACACGCACCAGTCTTTCTCACAGCCTGAGACTGATTCTATACCTACACATAGTGAATGTACATAACTGGGAATGATGCGGAGGAGACTAATGTACGAGAGTCGCTGGATATAATGGACAAGTTGATGGGACCAATGGAGCTTGGGTCTGAAGAAACACAGACTTTTTAACCTGGCAAACTCACTTGTCCTTATTTGTACAGTACCATAGTGGTACAGTTACTGTATGTCACATGGGTTTAGATGAGGAGAACTGTGGGAAATGTAGTGGCTGTTGCGACGGGCAATCCAATGCAAGGTGAATGGAACTTTATTTACTTTTAGCCCGTAATGTATAGTACTACAGATGATTCTGATAATCACTCTGATTCTTATGGTAGGCACGATACATTCACCTTGCATTCCGTATGTGTCAATATCCAAGCCAGGTAAAGTGTTTGATAATGGAGTAAATCTGCATTGACTGTGTGTGGGTTGAGTGGAAGTGAAATGTGATGAGAACCAAACTTGGAAATGTTGAGTCAACTTTGAGAGTTTAAACACGTTTGATTTGAATAGCTTTTCCAATCAATGGTCATTAAAAAGTACTTGGTAAGGTTATGGGCTGGGCCATGACTGGATGTTCAAGATGGTAACAGAGCACAGAGGAAGTAGAAAAACAAAAATGATTGCGCAATCCTTTTTAAATGATTGAGCTGTGTTCGAATTGCCATTTTTCATTGACATTGGCTTTAATATTTCACCTCAAGCTTTTAAAAGCCCCTCTTGACGTTGTCATTTCTGACCATACCAAAATCATAATGTAGTCTTTCAAGGTATCATGTTGCTTTCCATTTTAAAGTGGTGCTGCATCGATGCTGTGTAGAGAAATCATTAACCGGCTAATGGACTGTCAGCGGGGTGTCAGTCAAGTCATACATTTATAATGGGGGCCACTTATGTGGCTATTGACAGTGGAAAATCTCACCTCGAAAAATAACAAATAGCACTTAATCTGGATTGTGATTTTCATAGCGATTGATTTTTCTTGTGCTGCAGTTGCTAAGCAAAGTCTGTGGAAACCTGTATGTTTACAGATGAATATAGGCTTGTCGTCGTTTTCTAAATGTGGTATTTTTCTGAATAACCGACTGTCCCGAAATGTTCATCTCAATGGCAGATGTATTGTATAGAATTCCAAACTGTGACCAGGATAGCCTTATTATGATACTGGGCCTAAATCGTCTGGGCCTAAGTTTGACAAATATCAAGGTGGTTTCAGTGTAATAGCCTGAGAGGGTTGCTACAATCAGTGTTTGAAGGTAAGTTCAGTGTTCTCTGTTTTAGATTTGAACGGGAGGTAAGGAATTTAGCTTTACACGGTGTTGTTGATGGGGAAGTGTCTGTTTTTGATTTGAAGTTAGGCTCAGTGTATTCTGTCGTGCTAACGCTAGCTGAAGTGTGCTTTCTAATGTTCATACTGGAACTAGCTACCTCCTTAGGCATATTGGGGATTTGTAGCTATGGGGTCATCATTGTCAACTTTTCCCACCATATGGTCCATGCTGTGGGCGTGAGGTCATTACTAATGGCCAAGTGGTCAGGGGTCATGTTTGAACCATGTTTGATGGATTTTCCACAGCTGCTACTTGTTCGAGTACAAAGAAGTTTCCCACTTGTCAAAAAGCAGATTTGATATGAAGTCAGGATATTTCTTATTTTATGATATTATCTGAGGTATTGTTTTCTCCAGCGACACTTCGTGTTAGGCTATTATGAGCTTTAATAAGCACTTGTtttattcaacatattttatttaGCTTTGCGGGTCACCGCTAGAGAGATAATAGAAATGACTTGTCAGTTTTAATATTTGTGAGACTAGGacaaatatgaataagaaatggCATTCTAAAACACCCCTCTGTGATAAGTGAAGAGATTACCTGGACCCTGAGACAGATTTCCCCATTGGGTTCTTATCAAGTCATTTTTTCTCTTTAAATTTAGACTAATCGCTTTCTGCCCAGATATAAGATCATGTAGGACTGTCATATTTCCTTATTCATACATTGTTTATTATGTGTTCATCAGTTCTGTTGTTCATACCAATTTGAgtcttttttaaattgtatatatcTGTGATCCTTGTTCCTTCGTATATTATTTTACACTGAGACAATACTGCCTGTTCAAGTACAATGTACATTAAATTATGGTAGGAAAGTGTGGAACCATACAGCCAGGAACTATCAGGTGATCTCATGCCTTTACATCATTGTATTTTAACACCTACAGCATTCCGGTTGGACATCCATTAACATGGACAACTGTAACCTCCACAGAGTTGGGTCAAATGACACCAGGTCCTGTATCCGTTTGTATTACCTGGGGGTCGTGAACTCCATGCCCTCATCTGTCGTGATAAGAGATGATTAGTGATTTGTACATTTGCTCAGCTTTTACATAAGTAGACTCTGGGGAGAGTGGGTAGACTACATTTTTCCTGATACTGAAAAGCaaggatatggagagaaaagTGAAGCAGGATCTGTCACTTCATCAGTTAAATTATGCTGAATGTTGTTTACTTACCCTTCCGTGACGAGTGAGACCTGTGACTAACGTAGACCAACCTCAGCCTTGTCTAGAACAAGCGCCTTCAAACCACTCATGAAAAAAAGGTAATCTACTATTTCCTGTCTTTATGTAACCATAATTGTCTAAAGCTCAGCAGTCAGTGGCAGTGCAATTGTTCTTGATAATGCTGTGCAAAATGTGTGTTCCAGGGTTCATTTCCTGTGTGTTATGATGTGAAATGAACAGATTAGAAATGACAGAAACATGATACAGTAGGATGGCAATCTCTTTATGTTGTCACTTTAGCTTGCTCATGGCCTCTGGAATTGTATTGCTAGGTTTCATCTCCGATGTTGCTGTTTTCATCACCTGCGCTGCCATTTTGAATGTTGAGTGTCTTTGGTCATCGGCTACCGACACGCACTGCAGTGTTTGTAAAAACAAAGGTATTCTTTGTATTCGATTTTCATGGAAATGTCCACATCCCTACTGTTCATGACTGTACAATTTGTATATTATAAAATTATTTATATTTAATGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272545 lncRNA downstream 21464 25149550 ~ 25149823 (-) True G238509
TU272527 lncRNA downstream 41634 25129102 ~ 25129653 (-) True G238494
TU272416 lncRNA downstream 239839 24928799 ~ 24931448 (-) True G238414
TU272243 lncRNA downstream 401956 24767203 ~ 24769331 (-) False LOC110515154
TU272662 lncRNA upstream 1137 25237672 ~ 25237878 (-) True G238623
TU272663 lncRNA upstream 1653 25238188 ~ 25238510 (-) True G238624
TU272787 lncRNA upstream 31235 25267770 ~ 25268121 (-) True G238713
TU272772 lncRNA upstream 97416 25333951 ~ 25335809 (-) False G238712
TU272775 lncRNA upstream 97416 25333951 ~ 25335809 (-) False G238712
XM_021594265.2 mRNA downstream 45845 25119183 ~ 25125442 (-) False notchl
XM_036973053.1 mRNA downstream 45845 25119183 ~ 25125442 (-) False notchl
XM_036973054.1 mRNA downstream 45845 25119183 ~ 25125442 (-) False notchl
XM_036973057.1 mRNA downstream 45845 25119183 ~ 25125442 (-) True notchl
XM_021594249.2 mRNA downstream 60171 25107822 ~ 25111116 (-) True LOC110515302
XM_036973180.1 mRNA upstream 229316 25465851 ~ 25510719 (-) False LOC110515443
XM_036973239.1 mRNA upstream 229316 25465851 ~ 25510720 (-) False LOC110515443
XM_036973179.1 mRNA upstream 229316 25465851 ~ 25521829 (-) False LOC110515443
XM_036973181.1 mRNA upstream 229316 25465851 ~ 25521829 (-) False LOC110515443
XM_036973182.1 mRNA upstream 229316 25465851 ~ 25521829 (-) False LOC110515443
TU272446 other downstream 205079 24936516 ~ 24966208 (-) False LOC110515208
TU272443 other downstream 219105 24936667 ~ 24952182 (-) False LOC110515208
TU272445 other downstream 224282 24937629 ~ 24947005 (-) True LOC110515208
TU272241 other downstream 400964 24769704 ~ 24770323 (-) True LOC110515154
TU272242 other downstream 401316 24769562 ~ 24769971 (-) False LOC110515154
TU273578 other upstream 586821 25823356 ~ 25824757 (-) True LOC110515750
TU274740 other upstream 1332566 26569101 ~ 26569522 (-) True G240409
TU274804 other upstream 1438057 26674592 ~ 26675033 (-) True G240464
TU275014 other upstream 1834520 27071055 ~ 27075883 (-) False LOC110516631
TU275018 other upstream 1841504 27078039 ~ 27079944 (-) False LOC110516631

Expression Profile