RNA id: XM_036973158.1


Basic Information

Item Value
RNA id XM_036973158.1
length 1707
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC110515419
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25262873 ~ 25270428 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTTATTGTGTAATATTGACAGCCTCTGCATCATTAGTAGTGAAAGAAAAGGTGAGCCTACCACAGTCACGAATATAGCCCTGCGTTGGCCCTATAAAAGGAAAAAGAACAGCACCAAGCACCACTCAACCTCCTTGAAGACCCATGAGCAGATAGGTGCAGTGTCTCTCTCCTGGATTTCAGGCACAATGTTTGCGTTATTGGTTTGCATCCTGACACTGCATGAAGTGTACACTGTGTGCAATGTGGTAAaaattTGCCCAGACAGCACAGCAGTTCAGGCTGAGATCCTTAACCAGCACAACGCCTTCCGGAGAGCGGTTACGCCAACTGCTAGAGACATGCTCAAGATGAACTGGAGCGAGGAGGCAGCGGCCAGTGCTCAGGCTTGGGTTGACACCTGCTCCATGGCTCATGGCCCACCCAGCAGTCGCATGCTTGGCGACTACGAAATGGGTGAGAACCTGTTCATGTCCTCCGCTTCTAAGAATTGGACTCAAATCGTTACAGCCTGGCACAGTGAGGTCATAGACTACTCCTATCCCAATGGATCTATCAATGGTAAATCCATCGGCCACTACACACAGGTGGTTTGGAACAGTTCATACAAGGTTGGCTGTGGTGTGGCCCTGTGTCCTGGCTCAGTCTACTTCTATGGATGCCAGTATTACAGAGCGGGAAACTACAGAGGAGTGGCTCCTTACAAGGAAGGAGCTACATGTGCCGACTGCCCCAACTCCTGCGAAAATAAGCTTTGCACCAATCCCTGTCCTTACATAAACAAGTATGTCAATTGTGCCGCCATGAAAAAACAGGCCGGGTGCAGTAATCCTTTGGTGTACGCCTGGTGTCCCGCCCTCTGCCTGTGCACCTCCAAAATCATCCCAATAGCAAAGAAGTGAAACCACCAGACCTCTCCAAAATGGTCCACTGAAAGATAACTTTGAATGATTCCTCTGTTGTTTCCTTGTctatgagaagaagaaaaaaaacatcaaaCCTGGTTGATCTATCTACTGTACTTCTGGTAAAGTCAGTTGATTTGAAAAATACTAACTATCACTAATAATATTTTAATTATCACTGTAGGTCTAAGGTACAGATAAAACATGATTCTTATTCTGGGGGTAACATAAGGTGTATAACCTACAGTAACTAATGTTAGTTTGAAGCGTTGCAATTGATTTTGTTCCCTTTCATTGGTTTCAATGTCTTCACACCCATTTCACCAAAGAAAATCCATTTTTGATTTGCATGGAAGTTGAATAAGAATATCCTCTCCATTTTGAGAAGCAATATTTCCATCAGTTACAGTAACAGTGAACACGTTGATCATTTAGCTAATTAACCACACAGTAATATGGTTATACAGAACTGTAATACCTCAACACATTTAACTTTAAGTTGATTTATGCTGCTCACCATTTGCTCTATCAACATTAAATGTTTGCACATGACAGAAATATATAACCCTTATTATTTTCCTTAATCACATTAAATGATCATGAAGATTAATTCATGGACTCTGTGTTAATGGTTTTACAACTCACTATCAGATAGTCAGCGTCACCACCAGATGCCTCTGTTGTACAACAGTAAATTCTGTAAATTCTGTATCAGAATAACATGACCGTCTGCAGGCTTGAtatacactgccgttcaaaagtttggggtcacttagaaatgtccttgtttttgaaagaaaa

Function

GO: NA

KEGG:

id description
K19919 CRISP1_2_3; cysteine-rich secretory protein 1/2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272661 lncRNA upstream 24946 25237720 ~ 25237927 (+) True G238622
TU272659 lncRNA upstream 25580 25237085 ~ 25237293 (+) True G238620
TU272571 lncRNA upstream 71471 25191140 ~ 25191402 (+) True G238534
TU272570 lncRNA upstream 71960 25190668 ~ 25190913 (+) True G238533
TU272568 lncRNA upstream 73100 25189570 ~ 25189773 (+) True G238531
TU272849 lncRNA downstream 87906 25358334 ~ 25358552 (+) True G238774
TU272865 lncRNA downstream 99811 25370239 ~ 25370458 (+) True G238790
TU272992 lncRNA downstream 192377 25462805 ~ 25463214 (+) True G238916
TU272999 lncRNA downstream 194174 25464602 ~ 25464806 (+) True G238923
TU273019 lncRNA downstream 223988 25494416 ~ 25495060 (+) True G238937
XM_021594286.2 mRNA upstream 97508 25162240 ~ 25165365 (+) True vmo1b
XR_005042063.1 mRNA upstream 101723 25156376 ~ 25161150 (+) False LOC110515374
XR_005042061.1 mRNA upstream 101723 25156382 ~ 25161150 (+) False LOC110515374
XM_036973108.1 mRNA upstream 103100 25158273 ~ 25159773 (+) False LOC110515374
XM_021594294.2 mRNA upstream 103100 25158621 ~ 25159773 (+) True LOC110515374
XM_036973175.1 mRNA downstream 4975 25275403 ~ 25335823 (+) False LOC110515430
XM_036973178.1 mRNA downstream 4984 25275412 ~ 25335823 (+) False LOC110515430
XM_021594340.2 mRNA downstream 4998 25275426 ~ 25335823 (+) False LOC110515430
XM_036973177.1 mRNA downstream 5364 25275792 ~ 25335823 (+) True LOC110515430
XM_021594415.2 mRNA downstream 292902 25563330 ~ 25566407 (+) True si:dkey-82o10.4
TU272577 other upstream 63639 25195287 ~ 25199234 (+) True G238540
TU272008 other upstream 486928 24775279 ~ 24775945 (+) True G238050
TU272005 other upstream 496510 24765666 ~ 24766363 (+) True G238047
TU271992 other upstream 512490 24749405 ~ 24750383 (+) True G238034
TU270587 other upstream 1207206 24055319 ~ 24055667 (+) True G236753
TU273162 other downstream 270341 25540769 ~ 25541613 (+) True G239026
TU273930 other downstream 943214 26213642 ~ 26220183 (+) True G239697
TU273986 other downstream 1056980 26327408 ~ 26328331 (+) False G239752
TU273987 other downstream 1056980 26327408 ~ 26328025 (+) True G239752
TU274539 other downstream 1780758 27051186 ~ 27051954 (+) True G240244

Expression Profile