RNA id: XM_036973177.1


Basic Information

Item Value
RNA id XM_036973177.1
length 5237
RNA type mRNA
GC content 0.49
exon number 7
gene id LOC110515430
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25275403 ~ 25335823 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGACATTATGTTGCCATGGATGGCTGTAGAACAGATACGAGAGGAGCACAATCCATGGAGCACGCGACATTAGGTACGAGTCAAATATGGACCGAAAGATGATACGGAACGTTTTTGTGCAGATGTTATAACGAGGTAGCTAGCAAGCCAGGACATTGGATAAATACAACAGCGTTGCAAGTGAAACACCTACATTGCAGGTTGACAGCTACGCTTGGTCTTTCTGTGTGCGTGGAGTGCCTATGGCGGAGTTTGGAGAGAACGACTGCTCATCTCCATCGAATACTGGGGATTCGGTGGCTTTGCCCAGTGATAAAACAGACGGGAAGACGCAGTGCGAAGTATCGGTCTTCAATGGGGACTGTGGGATACCGGCAAACATGGTTGGATCAGAAACGTTACCTGACAGCCCAGGGCTTGAAACAGCCAACAACTCCTCTGTCGGATTGGATTCCAAATCTGGAATACCACGCAGGAGCAGCATTATAAAGGATGGCTCGAGGCTGCGCAAAGAGAGGAAGAAGACGGTTTCGTTCAGCAGCATGCCCACTGAGAAGAAGATCAGCAGTGCGAGCGACTGCATCAACGCCATGGTGGACGGCTCGGAACTGAAGAAGGTCCGCTCCAACTCCCGCGTTTACCACCGCTACTTCCTCCTGGACGCCGACATGCAGTCTCTAAGGTGGGAACCCTCCAAAAAAGAGTCAGAGAAAGCCAAAATTGATGTCAAGTCCATCAAAGAGGTGCGGACAGGGAAAAACACAGAAACGTTTAGGACCAACGGAATATATGATCAGATATCAGAGGACTGTGCCTTCTCGATCATCTATGGGGAGAACTATGAGTCTTTGGACTTGGTTGCAAACTCTGCCGATATGGCCAACATATGGGTGACCGGGCTTAGATACCTGATATCCTATGGGAAACACACACTGAATATGATTGAGAGCAACCAGAACAACATGCGCTCCTCCTGGCTCGGGGACCTCTTTGAGGAGGCTGATGCCAACAACAGCAAGCAGATCAGTCTATGTGCTGCCGTGCAGCTAATTAAAAACCTAAACCCTGGACTCAAAAACGTTAAGATTGAACTCAAGTTTAAGGAGTTTCACAAATCTAAAGATAAGGTGGGATGTGGTGTGACTAAGGAGGAGTTCATTGAAGTCTTTCATGACCTTTGCACAAGACCagaaatgtatttccttcttgTCCAGTTCTCTAGCAACAAGGAATTTCTAGATACCAAGGACTTAACTATGTTTCTGGAGGCTGAGCAGGGTATGGCACAAGTAAGTGAAGACACCAGTCTGGAGGTCATTCAGAGTTATGAACCTTCCAAAGAGGGGCAGCTCAAGGGCTGGCTCTCCCTTGATGGGTTTACCAATTATCTCATGTCGCCAGAGTGCCACATCTTTGACCCGGAACAAAAAACTGTGTGTCAGGACATGAACCAGCCCTTGTCCCACTATTACATCAACGCTTCCCACAACACATACCTGATCGAGGATCAGTTTAGAGGCCCCTCTGACATTACAGGGTACATCCGTGCCCTCAAGATGGGCTGTCGAAGTGTAGAACTAGATGTCTGGGATGGACCAGATAATGAGCCTGTCATTTACACTGGCCACACAATGACCTCGCAGATAGTCTTCTGCAGTGTCTGTGACGTCATCAACAAATATGCCTTTGTTGCATCTGACTTTCCCCTGATATTGTGTCTGGAGAACCACTGCTCCTTAAAGCAGCAGAGGGTCATGTTTCAGCAATTGAAAAAGATTCTTGGTGACAAGATTTACATGGTTCCACCTTCACCTGAAGACAGCTACCTGCCCTCACCCTTTGACCTCAAGTGTAAGATCCTGCTGAAGGGGAAGAAGCTGGGCACAACCTGCATTAGCTCGGAGGGTGAAGTGACTGATGAGGATGAGGGGGCTGAGATGTCACAAAGAATGAACATTGAAGCCGACGAACAGCAGAGCATCCCACTGAAAAAGTTCCAGCTGTCCAAGGACCTCTCTGACCTGGTAACGTTGTGTAAATCGATTGCGTTCAAAGACTTCCCAACAGCTTTCCAAAGCCAGAAGCACTGGGAACTTTGCTCGTTCAATGAGGTCTTTGCCAGTCGCTGTGCCAATGACTTCCCAGGCGACTTTGTTAACTACAACAAGAAGTTATTGGCGAGAGTCTACCCGAGCCCAATGCGGATCGACTCTAGTAACATGAACCCTCAGGACTTCTGGAAGTGTGGTTGCCAGATCGTGGCAATGAACTACCAGACCCCCGGCCTGATGATGGACCTAAACATTGGCTGGTTCCGTCAGAATGGGAACTGTGGGTATGTGCTGCGACCAGCCATAATGAGGGAGCAGGTGTCATATTTCAGTGCCAACACTAAAGACTCCGTACCTGGTGTGTCTCCTCAGCTCTTGCACATAAAGATCATAAGTGGACAAAACTTCCCCAAACCCAAAGGCTCAGGCTCCAAAGGAGATGTTGTTGACCCTTATGTCTATGTGGAGATACATGGCATCCCTGCTGATTGTGCAGAGCAAAGGACTAAAACTGTCAATCAGAATGGGGAGAACCCACTGTTTGATGAAAGCTTTGAGTTTCAGATAAACCTACCTGAGTTGGCCATGGTGCGCTTCGTGGTGCTTGATGATGACTACATTGGCGACGAGTTCATCGGCCAGTACACAATCCCCTTCGAGTGTCTCCAGCCGGGATTCCGGCACATACCGCTACAATCGCTAACGGGGGAAGTCCTTCCCCACGCCTGGCTATTCGTCCATGTGGCCATCACCAACCGAAGGGGCGGGGGCAAGCCTCACAAGAGGGGACTGTCTGTGCGTAAGGGCAAGAGAAGTCGGGAGTACGCCACCATGAGAGTGCTGGTCATCAAGGCTGTGGACGACATCTTCAAGACAGCCATACTGCCACTGAGGGAAGCCACCGACCTCAGAGAAAACATGCAGAATGCCATAGTGCCCTTCAAGGAACTGTGTGGCCTCTCGGCAGTGGCCAACCTGAAGCAGTGCATCCTGGCCCTGTCCTCCCGGCTGACGGGGGCTGACAACAACCCTCTCCTGGTGTTCAACCTCAAGGACCAGTACCCCACCATGGAGCCCCAGGGCCTGCTACCAGATGTCCTGAAGAAGGTGGTCACTGCCTATGACATGATGATCCAGACCAGCAAGACTCTGCTGGAGAACTCCGAGGGAGCCTACGACCGAATACTGCTAACCCAGAAAGCAgCGATGGAGTTCCATGAGAACCTCCATGACATGGCGGTGAAGGAGGGCCTGAAGGGCAGGAAGCTGGCCAAGGCTGTGGAGAGCTTCACCTGGAACATAACCATCCTCAAGGGCCAGGCGGACCTGCTGAAGCACGCAAAGAGTGAAGTCCAGGAGAACCTGAAGCAGATCCACTACGCCGCCCTCACCTGTAACCTCAGTAAGGACGGGCCATCAGGGAGCACGGCAGGCTCCGAGTCCAGGACCCGACCACGCAGCCTGGACGCCATCCCCGAGAAAGCCACGGGGGAGGACGAGCTCTCTGAGGAGGACAACTGAAGGCTTACGCCCTAAACCCTTCATACCTTCAAGCCCCTTGCCCTACCCTAGTGGCACTCATACCCCAAGCACTTTTCCCTACCCTAGTGGCACTCATACCCCCAAGCACCTTTCCCTACCCTAGTGGAACTCATACCCTCAAGCACCTTTCCCTACCCTAGTGGCACTCATACCCCCAAGCACCTTTCCCTACCCTAGTGGAACTCATACCCCCAAGCACCTTTCCCTACCCTAGTGGAACTCTTACCCCCAAGCACCTTTCCCTACCCTAGTGGAACTCATACCCCCAAGCACCTTTCCCTACCCTAGTGGAACTCATACCCCCAAGCACCTTTCCCTACCCTAGTGGCATACATAAATCTCCTTACCGCAGTCCCACACAAACCTGACTACAGTGTAACTGTTCTAGTGCCGTTGCCACACAACTATTCTTATTCCAGCGCTGTATACAACCATTCCATTCCCACCCCAGTCCCACTAAAACCTCCCTTTGCTTAACCCGGTACCACACAAAAAGCCCTTAACCCTTCCTGCCCACCTCAACGTCCAACAGCAAGATGTTGCGGGTCAACTAGGAGGGCCACGTGAACTTGCAGCCACGGGACAGTCTTAAAGCAGTGACCTACTGTAGAGACAGTGCACTTATTTACAGGCAGACCCCAGGGCCTGACCCTAGGAGAGCCGCTCTGAACGGCTCAAGGATTTCTTAAGCACAATTTACGGGTTTCTGACCAACCAGAAACTAGAGCTGTGAATGTAATaggaaacaggaagaggaacaatGGCGAGACGAAAAGGGAGGAGAGCGCTGTTTACAATAATGAACTTGTTCATGTTTTTGTCTGCCAAaatagtatgtgtatatatgGAGTTCTGTTACTTTTTTTCCAACGTGCTTCATTTTATTATTGTATTCTTGAGAAATAAGATTTATTTTGTAAAGGAAATGGCTCGTCCATGAAAAATAACTATTTTATTTGTCTGTGCAGATGTGAAATGGAAGTGTCCTTGACACTTTCCCACTGTTCCTTTGTCGAGACCGAGGGACGGATAGAGACTTTAAACCTCAGTGTGTGGTCCAAAGGGTGGCAGTCGAGTCTCAAGCACAACTAGCAACTGCTTTGGGAAGGAACCATGGAGAGAGTAACGCGTTAGGCCTACGTTTTGGTGTCATTTCACCATTCCATGTGAGAGGGTTGAGTGGGATGTACAAAGTAATAATAGCTTCTCAACCAGTCCTGGTAACAAACTAGCACCCTATTCATGAATACGTTTTCATGTACGACTGTGCCTCATTTGCTACAAATCAGTCAACAAAGGGGATGGATGGTGAGGAAAGAGACCCTCTTCCTCACATCCATCTTAACCTGCTTTTTCCCCACCAGTTGCTTCTAGTTTTGTATTTGTCCCCTGTTCATTCTCTCCACAGTGCTGAAACAGTGTTGCTCCTAGTCAACTTTAGCCACCCACCACTACCTCTGGATCTCACCACCAGTGTTTTAACTGGGCCCACACTGGGACAAAAAGTAATTCATGAACTTCAGTGTCGTGACAGTTGTATTTATAACTGTTGTTAACCATTTTTACAGATGGTTGAACTGAATACCGGTTTTGCTCTTATCTGTTAATTCCCAAAACCTTCAGAATAAACTACGTCAAATCGTT

Function

GO: NA

KEGG:

id description
K15370 PLCL2; inactive phospholipase C-like protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272661 lncRNA upstream 37865 25237720 ~ 25237927 (+) True G238622
TU272659 lncRNA upstream 38499 25237085 ~ 25237293 (+) True G238620
TU272571 lncRNA upstream 84390 25191140 ~ 25191402 (+) True G238534
TU272570 lncRNA upstream 84879 25190668 ~ 25190913 (+) True G238533
TU272568 lncRNA upstream 86019 25189570 ~ 25189773 (+) True G238531
TU272849 lncRNA downstream 22511 25358334 ~ 25358552 (+) True G238774
TU272865 lncRNA downstream 34416 25370239 ~ 25370458 (+) True G238790
TU272992 lncRNA downstream 126982 25462805 ~ 25463214 (+) True G238916
TU272999 lncRNA downstream 128779 25464602 ~ 25464806 (+) True G238923
TU273019 lncRNA downstream 158593 25494416 ~ 25495060 (+) True G238937
XM_036973158.1 mRNA upstream 5364 25262873 ~ 25270428 (+) True LOC110515419
XM_021594286.2 mRNA upstream 110427 25162240 ~ 25165365 (+) True vmo1b
XR_005042061.1 mRNA upstream 114642 25156382 ~ 25161150 (+) False LOC110515374
XM_021594415.2 mRNA downstream 227507 25563330 ~ 25566407 (+) True si:dkey-82o10.4
XM_021594422.2 mRNA downstream 241343 25577166 ~ 25584936 (+) False LOC110515550
XM_021594428.2 mRNA downstream 241535 25577358 ~ 25584936 (+) False LOC110515550
XM_036973287.1 mRNA downstream 242003 25577826 ~ 25584936 (+) True LOC110515550
XM_021594439.2 mRNA downstream 381464 25717287 ~ 25747404 (+) False LOC110515597
TU272577 other upstream 76558 25195287 ~ 25199234 (+) True G238540
TU272008 other upstream 499847 24775279 ~ 24775945 (+) True G238050
TU272005 other upstream 509429 24765666 ~ 24766363 (+) True G238047
TU271992 other upstream 525409 24749405 ~ 24750383 (+) True G238034
TU270587 other upstream 1220125 24055319 ~ 24055667 (+) True G236753
TU273162 other downstream 204946 25540769 ~ 25541613 (+) True G239026
TU273930 other downstream 877819 26213642 ~ 26220183 (+) True G239697
TU273986 other downstream 991585 26327408 ~ 26328331 (+) False G239752
TU273987 other downstream 991585 26327408 ~ 26328025 (+) True G239752
TU274539 other downstream 1715363 27051186 ~ 27051954 (+) True G240244

Expression Profile