RNA id: XM_036973179.1


Basic Information

Item Value
RNA id XM_036973179.1
length 4453
RNA type mRNA
GC content 0.52
exon number 14
gene id LOC110515443
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25465851 ~ 25521829 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGCACACTCGCGCAGCACACGTTGCTCGCATTTGCGCTCAATCCTGGCTCTCCGAAGTTCAGCTTTGCGCAGTCTTTGCGAGTGCAGTTTTGACAGCTCGTGTGTCCCTCTCAACCGTAGGAATTTCCTGAGCAGTTTTGGATCCGTCAAGGTGGAGCAGACTCTTATTAGAATTCTGAACTTTTGATGGAAAACAAGAGGCTTCACGGTAACTGCTAACTTTGAAGGTGATAGTGAGCAGAGGTGCTGAGAATGATGGACCATCTCAGCGAGGCGTGCCTGGGGAAGGAGAACTGTGACCTGGTCAACAGCATGGGCGACCGCGACTCCAAGGCCCCCCCAGCCAAGCTGGCCCGGCTGGAACAGAACGGCAGCCCCCTGGGCAGGGCCCGCCTGGGCAGCACGGGGGCCAAGCTGGCCGGGGTACCCTACAAACCCTCGGGACACCTCCTCAAGAACTGCCACAAGAGGGGCAACATGCTCCCTGTGTTCTGCGTGGTGGAGCATTACGAGAGCCCCATCGAGTTTGACAGCAAGGAGGAGCACGCCGAGTTTGTGCTGGTCAGGAAAGACATGCTGTTCAACCAGCTCATCGAGATGGCCCTTCTGTCACTGGGCTACTCGCACAGCTCGGCGGCACAGGCGAAAGGTCTCATTCAGGTGGGCAAGTGGAACCCGGTCCCACTGTCCTACGTGACGGACGCGCCGGACGCCACCGTGGCAGACATGCTGCAGGACGTGTACCATGTGGTCACGCTGAAAATTCAGCTGCACAGTTGTCCTAAACTGGAGGACCTGCCGCCAGAGCAGTGGACCCACTCTACAGTAAGAAATGCCCTCAAGGAGTTACTCAAAGACATGAACCAGAGCTCTCTGGCAAAAGAATGTCCCTTATCACAGagTATGATCTCCTCCATTGTGAACAGCACTTACTATGCAAATGTGTCGGCGGCGAAGTGTCAGGAATTTGGGCGCTGGTATAAACATTTCAAGAAGACAAAAGATATGATGGGCATGCGCCAACCCTCGCAGCTGGAGGGCTACCTGGGGACGTGTGTCCTCCACGACAGCCCGCGTGCCAACACACTAGCAGACATGGATGGCCTGTCCGATCACTCTCCTCCGGGccccaaccacaaccacaaccatctGACCTTCTCCCAACAGCCGATCCCGGGCAACACGGCCGAGCAGCCCCCCTCCTCCCCGGTTCCACCCCTGCCCCCTCCGTCCCATGGTGGGGGCCAGACCCCCGGCCGCCCGGCTCAGCTCCCCCCCGGCCTGCACCACCCGGGCCTGGTGTCCACCCCCATTAGCCCCCAGCTGGTGAACCAGCAGCTGGTCATGGCCCAGATTCTCAACCAGCAGTATGCCGTCAACCGGCTCCTGGCACAGCAGTCGCTGTCGCAGCAGTATCTCAACCACCCGCCGGTCAACCGAAATGCCCTGACCAAGCCCCTGGAGCCCCAGGTAGCCAGCAACACTGAGGTGTCCATGGAGATATACCAGTGGGTGAGGGATGAGCTGAAGAGGGCCGGCATCTCCCAAGCCGTGTTCGCCCGCGTGGCTTTCAACAGGACCCAGGGCCTGTTGTCTGAGATCCTGCGTAAAGAGGAGGATCCTAAGACGGCCAGCCAGTCTCTGCTGGTCAACTTGCGGGCCATGCAGAACTTCCTGCAGCTGCCCGAGGCCGAGCGAGACCGTATCTACCAGGACGAGAGGGAAAGGAGCCTAACGGCTGCCTCGGCCATGGGGCCTGCGCCACTCATCAGCACCCCGCCCACCCGGCCAGTGCAGGTATGGAACGAACAGCCCAGGAGAGAAGACTGTAACAACGTCAGACCTGAGGACTGGAACCCCAGAATCCCTGTGGGCATCTCTCCTATCCCCGAATCCAGAAAACCCGGCAGCATCACCTTGTTTTCCAACCCTTTTGCTGACACTCCTTACCCTGGCCAGGTGAAGGCCTCTCCGCTCCCCAGCGAGTGGAACGGCAAGACGGAGAGCTGCATCCTCAACATCAACTCCTCCATCTATGACGAGATCCAGCAGGAGATGAAGAGGGCCAAGGTTTCCCAGGCTCTGTTTGCCAAGGTGGCCGCCTCCAAGAGTCAGGGCTGGCTGTGTGAGCTTCTGCGTTGGAAGGAGGACCCCAGCCCAGAGAACCGTACGCTGTGGGAGAACCTGTCCATGATTCGCCGCTTCCTGAGCTTGGCCCAGGGGGAGCGTGACGCCATCTACGAACAGGAGAGCACGGCCGGCCAGCAGCAGCACCACGCCGACCGACCCCCGCACTTGATGCACATGTCCACTGACCCCATGCAGAACCCAAATCTGATGTATATGTCCCACACAGAtccactacagTCTCAGACCCATCAACCGccccagcaacagcagcagcaccaGCCCCCCATGTCCCTCCAGCACCCCTCCCAGCCTCCACTGTCCCAGCAGCCcatgcaacagcagcagcagcaaccacCCATGGGCCCCCGGCTTCCCCCTCGTCAGCCCTCCACCGCCTCCCCGGCAGAGACAGAGGACCAGGCCCGCGGCGGCGGGGGCACCAAGGCTCGCTCCGGCGGGGGCAAGATCTCCCAAGAGGCCCTAGGCATTCTGCAAAGCTTCATCCAGGACGTGGGGATGTACCCAGACGAGGAGGCCATCCACACCCTGTCGGCCCAGCTGGACCTGCCCAAGCTCACCATCATCAAGTTCTTCCAGAACCAGCGCTTCTACGTCAACCACCCGGCCAAGCCGCCCAAGGAACCCAgcaacagcagtagcagcagcccgGCCTTCGAGGAGGAGCTGTCGGACTTCAGGGAGGGCAGTGCCGAGCTGCTGAAGGAGCTGGAAGAGAGCACACAGACCAACAGCACCATCTTCTCCATCAAGATTGAGGAGCACCTGGCCCGCTCCGAGGCCCTTTCAGAATCTGACCACGAGACCAAGGAGTAGAGAGAGCGTTCCCCTGTCTGAACACTGCTGAAAGAGTAGTGCGACTGTACACACAGAGACTGAAATCAATGCTGAAGGGTAATGGTCTGGCTAGCGCAGTGCGACCACTGCGAGAGTAAAGAGTAGTGGTTTTATCAATGCAGAGTCTGGACTCTATGCGTACGAGTAGTATTTATATATCAATGCAGACTGAAAGGCTACGCAACGCTAGCATTCTCACACTGGAACCCCCCCATTTCCACAGACTACAGTAATACGAATACGTATTGCTTTTTCTGATTTTGTAAAACTTGTATTATTCACTGTAAAGACTGATGCATCATTCAAATAACCTGCACAAAAAATTATTCTAAGTATGTTGCCGTGGATATTTGCTGACTGCACTTAATGTCTGTTGTTTTACACTGATTTCCTTTCTTTTTGAGCTACTGATAATATAATAAGAAGCCCCCATGGAGTTTGATAGGACTTTGATAGGTGTTTACGTATGTGGTGTTaactggattttttttaaatgcatattAAATCGAGGACCAAGTGGATGACAAGGCCTTAATGATGAGGTACTAAGTCTGGAAGCCTGCTGGCAAATTAGTTATTCTTTGAAAATGCGGAAAAACATGACGGTGATTACGGATCACTCAAACTCTGGAATGCAAACCGCACCCCAGGTGTGTCGCCGAGAATAGCTCAATCGTTACATATtatttgttaggaagaaatataaatatatatatagacattATATTAACtgtaaaaaaatcaaataaaaaaatacagtctTAAAGAAACTATGCCAATAAATGCCTTGTACTATATGGCACTGCCGATTAGATTATTTTGCAAAACCTTTGTCACTGTACTTTCTGAATCAGCCACACAGTTTAAAAATGTGAATCACAAACTCTGTTTTTTGTTGTCTTCTACATTATTTATTTGCAGTTCATGCAGTGTTTCTGATGTAATTACTTTTTGGGGAAAGTTTGTTACATagcctttttattttatttcaatgaTCCTTTTCTATTTATAAATGTAATTTTGATGGGCAGTAAAAACAAAAAGTGTCTTAACGTTTTAAATGGACAATGTGCTTTAAAGGTTGCCTATAAAAGTGCTGTATGTCAAGCAACTCATGCTACAAGCTTCACAATTAATGTTGTATGCAATTTTTACTATCATGCAAATAAGCTTAGGTAAATTACTAACCTATAGAACATCTTAGAGAGAAAAACATATGCAATCTGTGTGAATATCGATGTCTGCAATGTGTCTTCCTTTGGTTAACAATCCAATTCAAGCTATTCCTGTATAAATATCCTGTATAAAAAAAGTGTTTCTTTTTTATGAGTTTATTTCAATGAGAACACCAGTTATTTTGTTACAACTGACTGTTTTATAAGTGTTTCTCGGTTTCTTTATGCAGAAATTGTCTAACTAGGAGTGGTTCTTTATTGTTAATTACACAATTAAACTGTTTGTATTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272998 lncRNA downstream 1304 25464226 ~ 25464547 (-) True G238922
TU272891 lncRNA downstream 73221 25392404 ~ 25392630 (-) True G238816
TU272877 lncRNA downstream 84100 25381521 ~ 25381751 (-) True G238802
TU272873 lncRNA downstream 88150 25377475 ~ 25377701 (-) True G238798
TU272872 lncRNA downstream 90384 25375261 ~ 25375467 (-) True G238797
TU273187 lncRNA upstream 19045 25540874 ~ 25541404 (-) True G239050
TU273272 lncRNA upstream 55391 25577220 ~ 25578695 (-) True G239133
TU273278 lncRNA upstream 69522 25591351 ~ 25591550 (-) True G239138
TU273650 lncRNA upstream 278575 25800404 ~ 25806943 (-) True LOC110515676
TU273577 lncRNA upstream 289376 25811205 ~ 25813187 (-) True G239402
XM_021594320.2 mRNA downstream 229315 25171287 ~ 25236536 (-) False LOC110515384
XM_021594305.2 mRNA downstream 229316 25171287 ~ 25236535 (-) False LOC110515384
XM_021594312.2 mRNA downstream 229316 25171287 ~ 25236535 (-) False LOC110515384
XM_036973147.1 mRNA downstream 229316 25171287 ~ 25236535 (-) False LOC110515384
XM_036973057.1 mRNA downstream 340409 25119183 ~ 25125442 (-) True notchl
XM_021594403.2 mRNA upstream 46210 25568039 ~ 25575807 (-) True LOC110515528
XM_036964726.1 mRNA upstream 62112 25583941 ~ 25589424 (-) True LOC110503974
XM_036973309.1 mRNA upstream 74875 25596704 ~ 25635892 (-) False LOC110515569
XM_036973300.1 mRNA upstream 74875 25596704 ~ 25643498 (-) True LOC110515569
XR_005042111.1 mRNA upstream 278408 25800237 ~ 25810632 (-) False LOC110515676
TU272614 other downstream 229484 25199088 ~ 25236367 (-) True LOC110515384
TU272446 other downstream 499643 24936516 ~ 24966208 (-) False LOC110515208
TU272443 other downstream 513669 24936667 ~ 24952182 (-) False LOC110515208
TU272445 other downstream 518846 24937629 ~ 24947005 (-) True LOC110515208
TU272241 other downstream 695528 24769704 ~ 24770323 (-) True LOC110515154
TU273578 other upstream 301527 25823356 ~ 25824757 (-) True LOC110515750
TU274740 other upstream 1047272 26569101 ~ 26569522 (-) True G240409
TU274804 other upstream 1152763 26674592 ~ 26675033 (-) True G240464
TU275014 other upstream 1549226 27071055 ~ 27075883 (-) False LOC110516631
TU275018 other upstream 1556210 27078039 ~ 27079944 (-) False LOC110516631

Expression Profile