RNA id: XM_036973287.1


Basic Information

Item Value
RNA id XM_036973287.1
length 2366
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC110515550
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25577166 ~ 25584936 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACCAATGGGTGGGACTGAGAAAGCTAATCATTATTTTTCGACGGACACAGTGCTTGTTGATAACAAGTTTGAGCCGCCATCCTAactgactagctagctagtcaaCACTGGTTATTAGTGGGCAAGACTTACGTAACACGAGTTCGAACCACATGTCTTCACTGCAATTATTTTTGGCTAGACATGGGCTTGTTATGTTTACTTGTTGGTTCTAGGAGTGACCATACAAGCAGTACTTCTGCATCCAGAGAAAGAGACTGGGGTGTAAGGACATGGCAAGTAGGGGTGGTGCAACACGACCCAATGGGCCGAACACAGGCAACAAGATCTCCCAGTTCAAATTAGTACTCTTAGGGGAGTCCGCTGTGGGAAAGTCCAGTCTGGTACTTCGTTTTGTCAAGGGCCAGTTTCATGAATTCCAAGAGAGCACAATTGGAGCTGCCTTCCTGACTCAGACAGTATGTTTGGATGACACAACAGTCAAGTTTGAGATCTGGGACACAGCTGGTCAGGAGCGCTACCACAGCCTAGCACCTATGTACTACAGAGGTGCCCAGGCCGCCATCGTGGTCTACGACATAACTAACAAAGAGTCCTTTGCACGAGCAAAGAACTGGGTTAAGGAGCTTCAGAGACAAGCCAGTCCAAATATTGTAATAGCGTTGGCTGGGAACAAAGCTGACCTTGCAAACAAACGAGCATTGGATTTTCAGGATGCCCAGTCATACGCAGAGGATAACAGTTTACTGTTCATGGAAACATCAGCAAAGACCTCTATGAACGTTAATGAGATGTTCATGGCTATTGCAAAGAAATTACCCAAGAACGAGCCTCAAGCTGCCGGAGCGAACAGTGGACGGAACCGGGGAGTGGATCTTACGGAGACAGCTCAGCCAGCCAGCCGCTCCTGCTGCAGTACCTAAACCTGGCCCACTCTTCCTAACTCTGAATCACATCTGGACATGGTGTTCCCCTTCCTGACATCAGACCTTCCACCTCTCGTCCTTTCTCCTGGGAATAGCTGAAGACTCTGTATAGCTGCATTTCTAATACTTTGTTTGGTTTTACTTTTCATTTTAAAGTGTATATCAGTATAATGTATGCATGTATCACTACAAGgcctaaaacatttttttattttatttttttacttcagttgGAAGACTAGCCCCTACGAGAGAGagtaagcagtgtgtgtgtgtgactgattcCCTGAAGAGAAAGTGTAACCTAGGTCATAGGGTTATTGGACTGGGGGTAAAAGTGAGTTGAGTGTCCTTCCAACCAGAACAAATCAAATTCCCCCATTGTGAAATGCCTGGAGGCTATGACAGTTTGTACTGGGTATAATACCATTATTGAAGCAGTGTCAGGTAAGGACTATCAAATCAAGCATTCCCCCTTGCACCTGCTGCCGAGATGACGACATCTCCGTCTGCAGAGAAGTTTGGCAAGAACATCCAACGCCATTACACCACTGGCCCACTGCAACCGGTTGAATAGGATAAAAGGGTGGTTTTGTGATTGGATGGCTGGTGACTCTGCAAGTGTGTCACATCTATGATGACTGCCTTGTGCATCATGGGAAGTCCTTCAAACCACAATATTCTCTGGTTGATACATTGATTTAAGGAAGAACACTGAGACAGTTGGACATGCTCAGACAAGTTTTGTAAAATGTCTTGCTAACATAACACCTAACATATGACTAGTCCTTTGTTTCCCCAAACTGTTATTGTTCAGTTATCAACTTGTCAGAATTAGTGGTGTTTAAAAGTAGGCCTCAAACCATGCACCAACATAAGTCTTGACTATTACCTATCATCAGTCTGTGGAATATTACTCTGTTATATAGGGTGTTGCAATGTTGTCTTCTACCAATACAGCTTGGAGGGCATAAGCTTGTCAGGAAAGTATCTAGAGATTCCGAACAATTTTACAGTACACCAATGTAGGTCTAGGTCTGCTATTGGTTTGTTACCTTGTCACAAACAAACTGGTTAAATGCTAATCAATGGTGTTCTTTTTAAATATGTAGTGTTATTAACAATTCAATTGTATCTCCTGTGTCTTGTTACTTTTCTCAATGGTCTGTTCATATTTGAGAGGACTATTGCATTGCACAATTGTTGGTTATAATTTTAATTAATGCTTGGCCATTACAATTTATAAAACTGATGCACTGTGTCGGACTTGCTAACCTATTGCCTCAAACAACTGGACGTGGTACTAACTGACTGGTAGTCTTTCTGAAGCCAGGTGGATTTAACAATGTCAAACATGACTAGTGAAGGACTGATCAGTTTGAGTGTGAGGGTACAAGTCAATAAATTAGGTATATTGTATGCCTTTATGTTTTTGATAT

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07887 RAB5A; Ras-related protein Rab-5A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU273180 lncRNA upstream 16021 25561588 ~ 25561805 (+) True G239043
TU273177 lncRNA upstream 19649 25557940 ~ 25558177 (+) True G239040
TU273169 lncRNA upstream 24130 25553449 ~ 25553696 (+) True G239033
TU273019 lncRNA upstream 82766 25494416 ~ 25495060 (+) True G238937
TU272999 lncRNA upstream 113020 25464602 ~ 25464806 (+) True G238923
TU273211 lncRNA downstream 6683 25591619 ~ 25591884 (+) True G239073
TU273336 lncRNA downstream 99475 25684411 ~ 25684627 (+) True G239196
TU273360 lncRNA downstream 124485 25709421 ~ 25709704 (+) True G239217
TU273356 lncRNA downstream 161891 25746827 ~ 25747398 (+) True LOC110515597
TU273432 lncRNA downstream 254666 25839602 ~ 25840173 (+) True G239280
XM_021594415.2 mRNA upstream 11419 25563330 ~ 25566407 (+) True si:dkey-82o10.4
XM_036973175.1 mRNA upstream 242003 25275403 ~ 25335823 (+) False LOC110515430
XM_021594439.2 mRNA downstream 132351 25717287 ~ 25747404 (+) False LOC110515597
XM_036973334.1 mRNA downstream 132628 25717564 ~ 25747404 (+) False LOC110515597
XM_036973321.1 mRNA downstream 134004 25718940 ~ 25747404 (+) False LOC110515597
XM_021594448.2 mRNA downstream 162850 25747786 ~ 25757241 (+) False LOC110515611
XM_021594453.2 mRNA downstream 162851 25747787 ~ 25757241 (+) True LOC110515611
TU273162 other upstream 36213 25540769 ~ 25541613 (+) True G239026
TU272577 other upstream 378592 25195287 ~ 25199234 (+) True G238540
TU272008 other upstream 801881 24775279 ~ 24775945 (+) True G238050
TU272005 other upstream 811463 24765666 ~ 24766363 (+) True G238047
TU271992 other upstream 827443 24749405 ~ 24750383 (+) True G238034
TU273930 other downstream 628706 26213642 ~ 26220183 (+) True G239697
TU273986 other downstream 742472 26327408 ~ 26328331 (+) False G239752
TU273987 other downstream 742472 26327408 ~ 26328025 (+) True G239752
TU274539 other downstream 1466250 27051186 ~ 27051954 (+) True G240244
TU275097 other downstream 1671652 27256588 ~ 27264393 (+) True LOC110516767

Expression Profile