RNA id: XM_036973309.1


Basic Information

Item Value
RNA id XM_036973309.1
length 2919
RNA type mRNA
GC content 0.50
exon number 8
gene id LOC110515569
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25596704 ~ 25643498 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATGGCTGCAGAAGGACATGCTTTGTTAAAGGAGAACTGGGACGCGTCTCCGCATGAGCATCGGCATTTGCTGCTTTCCAACAGATGGCAGCGCTCCTCTGAGCGGAGGGAAAAAAATACGTTtggtttccctccctctctctctccctctttcttttttacaactgcttctttTTATTCAGCCTTACCATCGCCTGGGGACTTGATGTGGCAAACATAGTTTTTATTTGCCTCAAACCGGTGTTTTGATATGGTATCTGCGCTTTTAGTCATGCTGGCTCCGAGTTCGTCATGTTGTTAAATGTGCTGTGTTAAAAGTCATCCCTGGTTCTAATTAATGGGTAATGCATGTCAAAATGGCCTCCTGCCGACGCTGATACGTCCTGCTCTGCCCACCATCCAGCAGTCTCTGGGCATGAAGCAGTTCCAGCTCCCGTTTCCCCTGGATACGGCCTCAGCAGTCAGCCTTTTCCCCGGCTTCGGCACGatggaCCCAGTTCAGAAGGCTGTTATGCATCACACGTTTGGAGTTCCTCCCTTGACCAAGAGAAGACACGTCTCGTGCAGCGTGTGCCAACTGAGATTCAACTCACAGAGCCAAGCCTTAGCCCACTACAAAGGAACAAAACACGCCAAGAAGCTGAAATCTCTGGACGCTACCAAATGTAAGCTCAGAGGTTCAGTGGTCACCAAGGAAACCACCAACCATGAAACCCCTAAGAGCATCAACCCTCCAGCAATGTGCTACGGCACTGACAGGAAAGATGGCTTTCCAGGTGCATCGCCGCTACCACTATCTCCTGTGCTCACACTGGCTCCAACCCTGGGATCCCTGGCATCATCCCTGGCACCCATGACATCAATGTTACCACCCCTGGCACCTACGCTGGCATCGAGTCCCAACTCATCCACAGGGACAGAGACTACCTCAGCTACAGGATGGGACGACCGGGCCTCGCCCAAACCCAGCTCACCTATAGAACCAGACATGGAGGAGGAGCAAGAGGCTGAGACAGACCCGGAGACGGAGGAAGAGAAAGCCAGGCGTCTGCTCTACTGCTCGCTCTGCAAGATGGCCGTCAACTCGGCATCCCAACTGGAGGCTCATAACAGCGGTACGAAGCACAAGACCATGCTAGAGGCCAGGAGTGGTGTGGGCTCCATCAAGTCCTTCCCCCGGCCAGGGGTCAAGAGCAAGCTAGCTCCGCCCACCAAGGCAGCCACGGGCCTGCagaacaaaacatttcactgtgagaTCTGCGATGTGCACGTCAACTCCGAGACACAGCTAAAACAGCACATCAGCAGCAGACGTCACAAAGACCGAGCGGCAGGCAAACCGGCCAAACCCAAATACAGTCCCTACAGTAAACTCCCGAAAGGCCAGGCCACACAACCAGTGAAGCTGACAGTGGGGAAGGAGTTGTGCCAACCTCAGATAACCCAGATAATGCCCGCTCACCTGGCAGCATTGgcatcagcagcagcagctatGGGCTCGGCCTTCCCCGGCCTCCGCTCCACCCACGCTCCCTCCCGTGGCCCCACCCTTTTTCAGACACAGACCCTCCCTGCTGCCCTGCTCCGCCCCGCCCCCGGGCCTGTCAGGACCTCCCATACACAGTTACTGTTTGCCCCCTACTGACTCACAACCCTATAGACTCTATGGACTTCCCATGACGGACATGCCACGGAAGTTATTATGAACCAGAGTCCCCTTCCCTCTGCTTGTCCCTCTATACATTTGGACCACAGGCCACCTTCACCAGAATATGGGGATAATAGGCACAGAGGAATTGTTTAACCCATACTGACAGATAAACCCTACTGGGCTGGCCAGACCTCCCGTTATGGATTTCACAAGGATCCCATCAATGGCCCAGAATTGATCAGCGTCCCCCTTCCCTCTGCTGTTCCCCCTACATTCAGAGAAGAACCACACCGGAACGAATAACGGCTAAAATAAACAGATGGCCGCGGTGTGTTAgcgatcacctgctgggtgtgaACGATCCAACATGTAGAATCGTGGGGAAATAATAGCCGATATTCTGATATTCGTCCTGGTGTGTATCCTCTGAAGACTACCATCTTCACCAAAAGATGTGGACTACAGTCAACCTGAAGCATTACATCTGGACTACTGCCCACTCTATTCCATTTGGATTACTACTGCTCTACAGCATTAACCCTGCATCTCCTGTTTAACTGGACTACAGGCCGGTCTCATCATTACTGTAGGACCACCCTGTCGAATCTACTCGCCCATCTTCACTGAGTCATTGACTCATCACAATCCCCTCCTATAGTAGCTAATACTTAGTAGTACCCACACAGCCACCCACGTTCATGTGCCATTCTCTTACCCATGAATCATACCCAAGAACAGGACTTATATTGTACTGCAATAATGTATAAGACAAACCGGTGAACTATGCAGTGTCATTTCTGTCTAATACAAGGCACCGTTTGAGCTATAATTGTGCTATAGGGATATCATATTTGTAAAGATAGTGGCGCACTAAGATCATTGCTTCAGTGGAGGTAGCTATCACTCATGTTTGTAAAAAAAGACTGGTAAGGATCTCCTCTTTTGCTGTTTGCACTTTAAGTCCCCTCTCTGTTGATGTCTACAGTGCATTAGATGGCTAGAGTATGTGTTGTAGTTCCTCTTGCATTACGTgtaggtgtctgttagtgtgtaagtgtttgtttctttgtgtgtgtgcgtatgtgtgtgagtgtatatgggtgtttgtgtgtgacctTACCCTCCACCTTAAAGCCATCCCAGCTGACACCCAATAACCATTCTGAATGACCACGTCATGGGCTCAAGGGACCACTAAGGCTTGTGTATAATATCTGTTAATGTGTAAAAGATGAACCATTTCAAATAAAAGAGTCTTACTTTGTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU273278 lncRNA downstream 5154 25591351 ~ 25591550 (-) True G239138
TU273272 lncRNA downstream 18009 25577220 ~ 25578695 (-) True G239133
TU273187 lncRNA downstream 55300 25540874 ~ 25541404 (-) True G239050
TU272998 lncRNA downstream 132157 25464226 ~ 25464547 (-) True G238922
TU272891 lncRNA downstream 204074 25392404 ~ 25392630 (-) True G238816
TU273650 lncRNA upstream 164512 25800404 ~ 25806943 (-) True LOC110515676
TU273577 lncRNA upstream 175313 25811205 ~ 25813187 (-) True G239402
TU273664 lncRNA upstream 196120 25832012 ~ 25834240 (-) True G239480
TU273697 lncRNA upstream 238919 25874811 ~ 25875963 (-) True G239502
TU273703 lncRNA upstream 262926 25898818 ~ 25899130 (-) True G239504
XM_036964726.1 mRNA downstream 7280 25583941 ~ 25589424 (-) True LOC110503974
XM_021594403.2 mRNA downstream 20897 25568039 ~ 25575807 (-) True LOC110515528
XM_036973201.1 mRNA downstream 74875 25465851 ~ 25521829 (-) False LOC110515443
XR_005042111.1 mRNA upstream 164345 25800237 ~ 25810632 (-) False LOC110515676
XR_005042113.1 mRNA upstream 164345 25800237 ~ 25810632 (-) False LOC110515676
XR_005042115.1 mRNA upstream 164345 25800237 ~ 25810632 (-) False LOC110515676
XR_005042116.1 mRNA upstream 164345 25800237 ~ 25810632 (-) False LOC110515676
XR_005042117.1 mRNA upstream 164345 25800237 ~ 25810632 (-) False LOC110515676
TU272614 other downstream 360337 25199088 ~ 25236367 (-) True LOC110515384
TU272446 other downstream 630496 24936516 ~ 24966208 (-) False LOC110515208
TU272443 other downstream 644522 24936667 ~ 24952182 (-) False LOC110515208
TU272445 other downstream 649699 24937629 ~ 24947005 (-) True LOC110515208
TU272241 other downstream 826381 24769704 ~ 24770323 (-) True LOC110515154
TU273578 other upstream 187464 25823356 ~ 25824757 (-) True LOC110515750
TU274740 other upstream 933209 26569101 ~ 26569522 (-) True G240409
TU274804 other upstream 1038700 26674592 ~ 26675033 (-) True G240464
TU275014 other upstream 1435163 27071055 ~ 27075883 (-) False LOC110516631
TU275018 other upstream 1442147 27078039 ~ 27079944 (-) False LOC110516631

Expression Profile