RNA id: XR_005042112.1


Basic Information

Item Value
RNA id XR_005042112.1
length 2820
RNA type mRNA
GC content 0.46
exon number 22
gene id LOC110515676
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25800237 ~ 25810648 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGAATAAACTGCATCCTTGAAAGAGAAAACAAgcttgaaaaataataataaaataacaggTGTATCCTACATATTTGCCATGGTGAAGGAGGTTGAACCTCAGGTATGACCCATTGAAGCAGAAGGGAGTTTGTGTAATGCCCAACCCATTTAAAAAGGTGAGAAGAGCAGACAAACTACTCCAGAAGTGAAAGGGACCAGACAACAAGGAATCACATGATCTCAGGAAACTGCTTGAAACTAATGCTCACAGACACCAGGTGGCAGCATTGAGACAGTCATGTAAGGTCCGCAACAGTGGAGGAACATCCCAGACCGCTCTCCAGCTAAATAATGCACGCAAAAATACGAGTCAGATTCACATAATCTCTGAAGATCCTGAGCTGGGGAAATTCAGTGCAACATACagaaatcaacattgtttcaacagTCATCCTCAACATACGCTCTTTTTGGAGATCCTTACCTCTTTGGTCAAGAACAGACTGTGCAGATAGTTTTTCATCAACTCCAAGCTGTTGATCTTCTTGCAAGGTACATGGAGTTGATGTGCAGCAGTTACCTGGAGTGTGGAAAGCAGACATTTGCCATGGAGAAGTTGGTCACTATGACATATATGTTTCAGAAACTGTTTGCAGTGGAGGACCAAAGGCAGTGGGTTATTGAGAGTGGAGCTCATAAGAATGCAAGGAAAAGATAGGAGAGTTGTCAATCGTGGAGAATCTTCTTGTTATACTACAAGATTATGACTTACTGTCCATAAGGATGAATGCAGAGTTGCTGCGGCTACTTTCCCCGGTGCGACAGGTGCGGGAGCATGGGAGGGAGTGTGAGGGCCTGCCGGTGCTGCTCAGCCTGCTGCACGGGGAGCACCTGAAGCTGATGTGGAGCGTAGTGTGGGTCCTGGTCCAGCTGTGTGAGGAGCCAGACACCAGCACCGGCAACTCTGCATTCACCTGGGGAGGGGTGCAACAGCTGCTCCACATCCTCGACAGTGAACGGGCGTACGTTTCGGACCGCCCCTCTATCGAGGCCCAATGCAGCGGGACGCATTCCAGAGACAGCACATCAGTGAGGAGCTCAGTCCACAGGAGGATGTGGACGACACCATATCTCTACAGTCAGGTAGGAACACACACTGGATATGTTGACTATAGCTCATACAGATTGATCTACGTCGAACataaacttatgtaaatgtttgtCTTTATTGCTGCATGCTGTGCGGCTCTGACTGAGCTCGTTTTGGATGACACCACTGCACATCAGGTGGTTCAGGAGAATGGGGTCTATGTAATTGCGAAATTGATTCTGCCACGACGCTTTCTCAGTGGACCAAAAGCAATATCCCTACAGTGCTATGCATTTCTGAACCTACCTTTCCTCTTCAGCATGGAATGTAACCGACATCTGTTTTTAAGGCTCTATCCTACAGATTTATTTGAGATGTTCATTGATGTTGGACATTATGTGAGAGACATCCCTGTCTATGAAGCACTTCAAGCAAAAGTTTCTCTCCACACGGTGACACAACTACTATACTGTAAAAACAACTATACGTAACATATAGCAGGAGGAATTGGACAGTCTGAGGGAGAGTATTGAGACTTTCGACCAGAACCACCCTCCTCTGAGAGTGATCAATGGTTACTCCATACTGGACCTTCTAGGCACTTCGGCAGTGTGTTCAAGGTGCCTGACAACCGACACAGACTTGCGTCCAGACATCGTGGAAGTCAGCTCCAAGATCTCTGACATGATGAGGTTCATGGACAGCTTGTACACCTCCCAGAATGCTTTGGAGAGGAGGGCCGGAGCGAGACAGGAAGCGAGCACAGAAGTACTTCCTGGTGAGCCATCGGGGCAGGGGCAACTGCCGCCACTCCTCTAAAGACCAGGAGAAAACCACTAGTAGGACTGATGAGTCCATGGTACCATAATTCTTTTTAGGCCACAGCTCAaaccaaataaaaaaatacaccgCCAAGGGCCTGTAAAGAGCAGCGTCAGTGCTTCTGTGGCAGATGAACAAATCTTAGCTGTTGGTGAGTTTGCTGTTCTGAAGCCAAGACCTCGACCAGCTAAATTGGGTCATTTTGAAGGATGTTCAACTTTCCTCCTTTAAAACTCTTTAGTTAAATGGCTTCAACTCAACTGATAAACATGTGGGTTTCATAGCGTCAGCAGGAATCTGTGTATCTCAGAGGAAGGTTCGGCAGACCGGTGATCCCATCCAAAACCCCCGGTATCACTCAGCTTCCCCCAGCTCTTCAGCACAGTGTCAAACGGTCGGGCGATTGAGAGATTCAAAAAGTCCCTGTTCCACTACGGAAGCAGTCCCTACAGTCTCAAGGTGGAGCTTAACAAGCTGCTCCAGGGTTCTCCAGAGCTAATGGAGTCGGGCTCTGCCAGCTCAGACTGGTGGTCTCTGGTCCAGTCTTTTGTGCTGCCAAACAAGGTGGTATGGAAAATGGGAATCAGCTATGAGCAGATGCAGCTATGCTTTGAGGAAATCTCAGATGAAGATCGATGCACTTTCTACCTACGTTTAACTTTTAACAGACCGGTATTCGTGTACTCAGGTCTGTGTGTTAATAGAAACTCTTGCATGTATTTCTATTACATGGGAAATAAATCGATTGCTGTGGAGAACCCTGTTTTGTATGTCTGGCTTTAGATTATTGAGCCACTCATGAATATTTCATATCGTTATTGTGTGTatacagtaatgagtgtaattCTCTACAAAGACCACAAGGGGCAGTATCAACCTTTGTATGGAGTATTGGCTCCTGTCAAGATTTTTAAAAACAAAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU273278 lncRNA downstream 208687 25591351 ~ 25591550 (-) True G239138
TU273272 lncRNA downstream 221542 25577220 ~ 25578695 (-) True G239133
TU273187 lncRNA downstream 258833 25540874 ~ 25541404 (-) True G239050
TU272998 lncRNA downstream 335690 25464226 ~ 25464547 (-) True G238922
TU272891 lncRNA downstream 407607 25392404 ~ 25392630 (-) True G238816
TU273577 lncRNA upstream 557 25811205 ~ 25813187 (-) True G239402
TU273664 lncRNA upstream 21364 25832012 ~ 25834240 (-) True G239480
TU273697 lncRNA upstream 64163 25874811 ~ 25875963 (-) True G239502
TU273703 lncRNA upstream 88170 25898818 ~ 25899130 (-) True G239504
TU273721 lncRNA upstream 125575 25936223 ~ 25936711 (-) True G239519
XM_036973300.1 mRNA downstream 156739 25596704 ~ 25643498 (-) True LOC110515569
XM_036973309.1 mRNA downstream 164345 25596704 ~ 25635892 (-) False LOC110515569
XM_036964726.1 mRNA downstream 210813 25583941 ~ 25589424 (-) True LOC110503974
XM_021594403.2 mRNA downstream 224430 25568039 ~ 25575807 (-) True LOC110515528
XM_036973230.1 mRNA downstream 278408 25465851 ~ 25521829 (-) True LOC110515443
XM_021594530.2 mRNA upstream 12164 25822812 ~ 25825108 (-) False LOC110515750
XM_021594532.2 mRNA upstream 26989 25837637 ~ 25854424 (-) True LOC110515765
XM_036973359.1 mRNA upstream 73170 25883818 ~ 25895854 (-) False ica1
XM_036973358.1 mRNA upstream 73170 25883818 ~ 25895857 (-) False ica1
XM_021594577.2 mRNA upstream 73170 25883818 ~ 25895863 (-) True ica1
TU272614 other downstream 563870 25199088 ~ 25236367 (-) True LOC110515384
TU272446 other downstream 834029 24936516 ~ 24966208 (-) False LOC110515208
TU272443 other downstream 848055 24936667 ~ 24952182 (-) False LOC110515208
TU272445 other downstream 853232 24937629 ~ 24947005 (-) True LOC110515208
TU272241 other downstream 1029914 24769704 ~ 24770323 (-) True LOC110515154
TU273578 other upstream 12708 25823356 ~ 25824757 (-) True LOC110515750
TU274740 other upstream 758453 26569101 ~ 26569522 (-) True G240409
TU274804 other upstream 863944 26674592 ~ 26675033 (-) True G240464
TU275014 other upstream 1260407 27071055 ~ 27075883 (-) False LOC110516631
TU275018 other upstream 1267391 27078039 ~ 27079944 (-) False LOC110516631

Expression Profile