RNA id: XR_005042114.1


Basic Information

Item Value
RNA id XR_005042114.1
length 3634
RNA type mRNA
GC content 0.45
exon number 21
gene id LOC110515676
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25800237 ~ 25810648 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTGAAAGAGAAAACAAgcttgaaaaataataataaaataacaggTGTATCCTACATATTTGCCATGGTGAAGGAGGGTAAGTGACTGCTCAGTGGCTCAAAGGAAACACGTTTCTCCTTTGTCTTGTGTTCCCTTGTAGTCGATGGCTGCATTATTCCCGAACTATGTCGCACATGTTGTTGTTCAGTTACTAGCTACCGCTAAGCTAATGTTTCTAAAACAGACCATTTTTATTTGTATATTGAGAGCAGTTGCAATGTAGCAAATGCCATGATATTGATTGCATTATAATATTGTGTCAATTATCGGAAGTTGAACCTCAGGTATGACCCATTGAAGCAGAAGGGAGTTTGTGTAATGCCCAACCCATTTAAAAAGGTGAGAAGAGCAGACAAACTACTCCAGAAGTGAAAGGGACCAGACAACAAGGAATCACATGATCTCAGGAAACTGCTTGAAACTAATGCTCACAGACACCAGGTGGCAGCATTGAGACAGTCATGTAAGGTCCGCAACAGTGGAGGAACATCCCAGACCGCTCTCCAGCTAAATAATGCACGCAAAAATACGAGTCAGATTCACATAATCTCTGAAGATCCTGAGCTGGGGAAATTCAGTGCAACATACagaaatcaacattgtttcaacagTCATCCTCAACATACGCTCTTTTTGGAGATCCTTACCTCTTTGGTCAAGAACAGACTGTGCAGATAGTTTTTCATCAACTCCAAGCTGTTGATCTTCTTGCAAGGTACATGGAGTTGATGTGCAGCAGTTACCTGGAGTGTGGAAAGCAGACATTTGCCATGGAGAAGTTGGTCACTATGACATATATGTTTCAGAAACTGTTTGCAGTGGAGGACCAAAGGCAGTGGGTTATTGAGAGTGGAGCTCATAAGAATGCAAGGAAAAGATAGGAGAGTTGTCAATCGTGGAGAATCTTCTTGTTATACTACAAGATTATGACTTACTGTCCATAAGGATGAATGCAGAGTTGCTGCGGCTACTTTCCCCGGTGCGACAGGTGCGGGAGCATGGGAGGGAGTGTGAGGGCCTGCCGGTGCTGCTCAGCCTGCTGCACGGGGAGCACCTGAAGCTGATGTGGAGCGTAGTGTGGGTCCTGGTCCAGCTGTGTGAGGAGCCAGACACCAGCACCGGCAACTCTGCATTCACCTGGGGAGGGGTGCAACAGCTGCTCCACATCCTCGACAGTGAACGGGCGTACGTTTCGGACCGCCCCTCTATCGAGGCCCAATGCAGCGGGACGCATTCCAGAGACAGCACATCAGTGAGGAGCTCAGTCCACAGGAGGATGTGGACGACACCATATCTCTACAGTCAGGTAGGAACACACACTGGATATGTTGACTATAGCTCATACAGATTGATCTACGTCGAACataaacttatgtaaatgtttgtCTTTATTGCTGCATGCTGTGCGGCTCTGACTGAGCTCGTTTTGGATGACACCACTGCACATCAGGTGGTTCAGGAGAATGGGGTCTATGTAATTGCGAAATTGATTCTGCCACGACGCTTTCTCAGTGGACCAAAAGCAATATCCCTACAGTGCTATGCATTTCTGAACCTACCTTTCCTCTTCAGCATGGAATGTAACCGACATCTGTTTTTAAGGCTCTATCCTACAGATTTATTTGAGATGTTCATTGATGTTGGACATTATGTGAGAGACATCCCTGTCTATGAAGCACTTCAAGCAAAAGTTTCTCTCCACACGGTGACACAACTACTATACTGTAAAAACAACTATACGTAACATATAGCAGGAGGAATTGGACAGTCTGAGGGAGAGTATTGAGACTTTCGACCAGAACCACCCTCCTCTGAGAGTGATCAATGGTTACTCCATACTGGACCTTCTAGGCACTTCGGCAGTGTGTTCAAGGTGCCTGACAACCGACACAGACTTGCGTCCAGACATCGTGGAAGTCAGCTCCAAGATCTCTGACATGATGAGGTTCATGGACAGCTTGTACACCTCCCAGAATGCTTTGGAGAGGAGGGCCGGAGCGAGACAGGAAGCGAGCACAGAAGTACTTCCTGGTGAGCCATCGGGGCAGGGGCAACTGCCGCCACTCCTCTAAAGACCAGGAGAAAACCACTAGTAGGACTGATGAGTCCATGGTACCATAATTCTTTTTAGGCCACAGCTCAaaccaaataaaaaaatacaccgCCAAGGGCCTGTAAAGAGCAGCGTCAGTGCTTCTGTGGCAGATGAACAAATCTTAGCTGTTGGTGAGTTTGCTGTTCTGAAGCCAAGACCTCGACCAGCTAAATTGGGTCATTTTGAAGGATGTTCAACTTTCCTCCTTTAAAACTCTTTAGTTAAATGGCTTCAACTCAACTGATAAACATGTGGGTTTCATAGCGTCAGCAGGAATCTGTGTATCTCAGAGGAAGGTTCGGCAGACCGGTGATCCCATCCAAAACCCCCGGTATCACTCAGCTTCCCCCAGCTCTTCAGCACAGTGTCAAACGGTCGGGCGATTGAGAGATTCAAAAAGTCCCTGTTCCACTACGGAAGCAGTCCCTACAGTCTCAAGGTGGAGCTTAACAAGCTGCTCCAGGGTTCTCCAGAGCTAATGGAGTCGGGCTCTGCCAGCTCAGACTGGTGGTCTCTGGTCCAGTCTTTTGTGCTGCCAAACAAGGTGGTATGGAAAATGGGAATCAGCTATGAGCAGATGCAGGTCTGGCTGAAACGGAGAAACTGGAAATATGGATGGTATAAGTGATAATTCCTTTCAGGCCATTATAGAGGAGGTTCTGGAGGAGAATGGATAAAACGCAATGAGGAATGACCAGGGTGCAACGGGGACAAACAAGTGACCTCCATCCTTATATATCATATCTTTATTAGCATGCTAGTGTTTTCCAGTCACACTGTGGAAATGGGCTAGCACTACATTTCTTTGAGAGGCTGATAACCTGGACACACAGTCTGCCTAAAGGGGAAGTGTTTCACGACAGGCTCAAACAGAGACAAATAGGGTCAGAGTACTGATTTCGGGCAAAAGAAAGCATTCATACTTCTCTATAACATATGCATATTAGACTATTTATGGCTTAAGACATTGAAACTGTATGGTTACTTGGAGTTTTTCCTCTTTGTGTTTGCACTGAGCTAATGTACTCATGCATTGATCATATGTACAAATCTATACCGTTTCTAGGGTCTTTCTcagtggggtactgttgtgtgattattttgtgatctctctctcgctcaggtTACACTTTCTTTAACTCTAAGTAGACTCAGGATAAGGATTTTACTGCTTTATTTCTAGTATTAAATTGCAGAATCACACATCAGGTGGCATGTTCCTAATGTCTCTATACAAtgactttgttgttgttgttgaggacttTTGCACAGTTAAGTAGTCTACTTCCAGATGGTATTCTATGTTAAACGTTATTAATTGTACATTTTAATTTGTTTCTCAACAGCTATGCTTTGAGGAAATCTCAGATGAAGATCGATGCACTTTCTACCTACGTTTAACTTTTAACAGACCGGTATTCGTGTACTCAGGTCTGTGTGTTAATAGAAACTCTTGCATGTATTTCTATTACATGGGAAATAAATCGATTGCTGTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU273278 lncRNA downstream 208856 25591351 ~ 25591550 (-) True G239138
TU273272 lncRNA downstream 221711 25577220 ~ 25578695 (-) True G239133
TU273187 lncRNA downstream 259002 25540874 ~ 25541404 (-) True G239050
TU272998 lncRNA downstream 335859 25464226 ~ 25464547 (-) True G238922
TU272891 lncRNA downstream 407776 25392404 ~ 25392630 (-) True G238816
TU273577 lncRNA upstream 573 25811205 ~ 25813187 (-) True G239402
TU273664 lncRNA upstream 21380 25832012 ~ 25834240 (-) True G239480
TU273697 lncRNA upstream 64179 25874811 ~ 25875963 (-) True G239502
TU273703 lncRNA upstream 88186 25898818 ~ 25899130 (-) True G239504
TU273721 lncRNA upstream 125591 25936223 ~ 25936711 (-) True G239519
XM_036973300.1 mRNA downstream 156908 25596704 ~ 25643498 (-) True LOC110515569
XM_036973309.1 mRNA downstream 164514 25596704 ~ 25635892 (-) False LOC110515569
XM_036964726.1 mRNA downstream 210982 25583941 ~ 25589424 (-) True LOC110503974
XM_021594403.2 mRNA downstream 224599 25568039 ~ 25575807 (-) True LOC110515528
XM_036973230.1 mRNA downstream 278577 25465851 ~ 25521829 (-) True LOC110515443
XM_021594530.2 mRNA upstream 12180 25822812 ~ 25825108 (-) False LOC110515750
XM_021594532.2 mRNA upstream 27005 25837637 ~ 25854424 (-) True LOC110515765
XM_036973359.1 mRNA upstream 73186 25883818 ~ 25895854 (-) False ica1
XM_036973358.1 mRNA upstream 73186 25883818 ~ 25895857 (-) False ica1
XM_021594577.2 mRNA upstream 73186 25883818 ~ 25895863 (-) True ica1
TU272614 other downstream 564039 25199088 ~ 25236367 (-) True LOC110515384
TU272446 other downstream 834198 24936516 ~ 24966208 (-) False LOC110515208
TU272443 other downstream 848224 24936667 ~ 24952182 (-) False LOC110515208
TU272445 other downstream 853401 24937629 ~ 24947005 (-) True LOC110515208
TU272241 other downstream 1030083 24769704 ~ 24770323 (-) True LOC110515154
TU273578 other upstream 12724 25823356 ~ 25824757 (-) True LOC110515750
TU274740 other upstream 758469 26569101 ~ 26569522 (-) True G240409
TU274804 other upstream 863960 26674592 ~ 26675033 (-) True G240464
TU275014 other upstream 1260423 27071055 ~ 27075883 (-) False LOC110516631
TU275018 other upstream 1267407 27078039 ~ 27079944 (-) False LOC110516631

Expression Profile