RNA id: TU273650


Basic Information

Item Value
RNA id TU273650
length 1364
lncRNA type sense_over
GC content 0.33
exon number 10
gene id LOC110515676
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25800237 ~ 25810648 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTATTGCTGCATGCTGTGCGGCTCTGACTGAGCTCGTTTTGGATGACACCACTGCACATCAGGTGGTTCAGGAGAATGGGGTCTATGTAATTGCGAAATTGATTCTGCCACGACGCTTTCTCAGTGGACCAAAAGCAATATCCCTACAGGCTCTATCCTACAGATTTATTTGAGATGTTCATTGATGTTGGACATTATGTGAGAGACATCCCTGTCTATGAAGCACTTCAAGCAAAAGTTTCTCTCCACACGGTGACACAACTACTATACTGTAAAAACAACTATACGTAACATATAGCAGGAGGAATTGGACAGTCTGAGGGAGAGTATTGAGACTTTCGACCAGAACCACCCTCCTCTGAGAGTGATCAATGGTTACTCCATACTGGACCTTCTAGGCACTTCGGCAGTGTGTTCAAGGTGCCTGACAACCGACACAGACTTGCGTCCAGACATCGTGGAAGTCAGCTCCAAGATCTCTGACATGATGAGGTTCATGGACAGCTTGTACACCTCCCAGAATGCTTTGGAGAGGAGGGCCGGAGCGAGACAGGAAGCGAGCACAGAAGTACTTCCTGGTGAGCCATCGGGGCAGGGGCAACTGCCGCCACTCCTCTAAAGACCAGGAGAAAACCACTAGTAGGACTGATGAGTCCATGGTACCATAATTCTTTTTAGGCCACAGCTCAaaccaaataaaaaaatacaccgCCAAGGTAAATCTTCCCTGGATTATATGGCCATAATTGATGTTTCTCATAAAACATCAAAACAACATCATAAAACAAGTGTGCTGTTTGGATTGGAATCAATTGATCTTTGTTATTGTTAAAGGGCCTGTAAAGAGCAGCGTCAGTGCTTCTGTGGCAGATGAACAAATCTTAGCTGTCGTCAGCAGGAATCTGTGTATCTCAGAGGAAGGTTCGGCAGACCGGTGATCCCATCCAAAACCCCCGGTATCACTCAGCTTCCCCCAGCTCTTCAGCACAGTGTCAAACGGTCGGGCGATTGAGAGATTCAAAAAGTCCCTGTTCCACTACGGAAGCAGTCCCTACAGTCTCAAGGTGGAGCTTAACAAGCTGCTCCAGGGTTCTCCAGAGCTAATGGAGTCGGGCTCTGCCAGCTCAGACTGGTGGTCTCTGGTCCAGTCTTTTGTGCTGCCAAACAAGGTGGTATGGAAAATGGGAATCAGCTATGAGCAGATGCAGCTATGCTTTGAGGAAATCTCAGATGAAGATCGATGCACTTTCTACCTACGTTTAACTTTTAACAGACCGGTATTCGTGTACTCAGGTCTGTGTGTTAATAGAAACTCTTGCATGTATTTCTATTACATGGGAAATAAATCGATTGCTGTGGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU273278 lncRNA downstream 208854 25591351 ~ 25591550 (-) True G239138
TU273272 lncRNA downstream 221709 25577220 ~ 25578695 (-) True G239133
TU273187 lncRNA downstream 259000 25540874 ~ 25541404 (-) True G239050
TU272998 lncRNA downstream 335857 25464226 ~ 25464547 (-) True G238922
TU272891 lncRNA downstream 407774 25392404 ~ 25392630 (-) True G238816
TU273577 lncRNA upstream 4262 25811205 ~ 25813187 (-) True G239402
TU273664 lncRNA upstream 25069 25832012 ~ 25834240 (-) True G239480
TU273697 lncRNA upstream 67868 25874811 ~ 25875963 (-) True G239502
TU273703 lncRNA upstream 91875 25898818 ~ 25899130 (-) True G239504
TU273721 lncRNA upstream 129280 25936223 ~ 25936711 (-) True G239519
XM_036973300.1 mRNA downstream 156906 25596704 ~ 25643498 (-) True LOC110515569
XM_036973309.1 mRNA downstream 164512 25596704 ~ 25635892 (-) False LOC110515569
XM_036964726.1 mRNA downstream 210980 25583941 ~ 25589424 (-) True LOC110503974
XM_021594403.2 mRNA downstream 224597 25568039 ~ 25575807 (-) True LOC110515528
XM_036973209.1 mRNA downstream 278575 25465851 ~ 25521829 (-) False LOC110515443
XM_021594530.2 mRNA upstream 15869 25822812 ~ 25825108 (-) False LOC110515750
XM_021594532.2 mRNA upstream 30694 25837637 ~ 25854424 (-) True LOC110515765
XM_036973359.1 mRNA upstream 76875 25883818 ~ 25895854 (-) False ica1
XM_036973358.1 mRNA upstream 76875 25883818 ~ 25895857 (-) False ica1
XM_021594577.2 mRNA upstream 76875 25883818 ~ 25895863 (-) True ica1
TU272614 other downstream 564037 25199088 ~ 25236367 (-) True LOC110515384
TU272446 other downstream 834196 24936516 ~ 24966208 (-) False LOC110515208
TU272443 other downstream 848222 24936667 ~ 24952182 (-) False LOC110515208
TU272445 other downstream 853399 24937629 ~ 24947005 (-) True LOC110515208
TU272241 other downstream 1030081 24769704 ~ 24770323 (-) True LOC110515154
TU273578 other upstream 16413 25823356 ~ 25824757 (-) True LOC110515750
TU274740 other upstream 762158 26569101 ~ 26569522 (-) True G240409
TU274804 other upstream 867649 26674592 ~ 26675033 (-) True G240464
TU275014 other upstream 1264112 27071055 ~ 27075883 (-) False LOC110516631
TU275018 other upstream 1271096 27078039 ~ 27079944 (-) False LOC110516631

Expression Profile