RNA id: XM_021594530.2


Basic Information

Item Value
RNA id XM_021594530.2
length 1603
RNA type mRNA
GC content 0.37
exon number 5
gene id LOC110515750
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25822812 ~ 25825108 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCAAGGATTTCACTGTACATGCAcgctctgtctctttcttgctctctctctctctcacacacacatacctgcttTCTCGCTCACTCTGACACATCGCACTCTTTCTCAGTTGAACAGACTCTCACACATACCTGCTTTCTCGCTCACTCTGACACATCGCACTCTTTCTCAGTTGAACAGAAGCAACAGTGGTTTACCCCTTCAGAAATAAAACACAAAGACAAACCTACTGACTCATAATATGACCTAATTATGTTACAACAAAACGGCTTGACATTGACATCCACTTAAGCTCTGTCTCTGCATAAAAACGCCGGCGCGCCGATTGTAATGTCACGCCAATGGATAGACGCACTTCTCTCTGTTAAAATTTGCTCCATGGGGTATTCCAGCAGGCTGCATCTTTGAACTATTGATATTATAGGTATTCTGTATTTATTCAGGCCATTAGTCTGGTTTTATCAGTGAAGTTACTctcatcaaataaaataaacgCATGAAGAGGAACAACTTTACGCACAGCACACCTGCTAACACAATGAAGATAATTCTACTCATGGTATTTTCCCTCGTTTTGGCAACTGTCCTCagccaaaaaatctattttgacGACAGTTGGAGAGAAGACAATGAAACGAGCAAATGGCCACAATCTGAGCAATACAAAGAAATCCTGAAAAGAATGACTCGAAAACCTGAGTCACGCAAATTCTTTGGTCTTATGGGGAAAAGAGGCTCCGCAAAATCCCAGGTAACAAGAAGAAggcagaaatttgagtCTTTTGTTGGACTGATGGGTAAAAGGAGCTCAGAGGAACAAGGTTCCTTCTAATGGATCTTCAAAGCAGCTACATACAACTTTGAATCAAAAGAATCAAGTGTGAACCAGGATGCACTGaacatgtgtttgcatgattgtTTCAGTCACGCGTGATGTCCAATATTTTGAAAACATTTTGCATCAAATTAAACAGTACTTGCAAAAATTGCTTTAGACAATTAAGGAAGATGCATATTACTGTGGTGTGaaatgtcaaatcttttcaggcAAATAACCTGTTAGTGCTCTGAAAACATTCATATTGTGCATGTAATGTGGCAGAATACTTACATCAAAAGTAAAACCACTAAACTGAGAACCGCTGTATGAAGGTGGAGACATGGTGGAGACAAAGCAGATGAATAAACTACAGAGCAAAATAAGTATCACAATTAAACTGTTTAAATTTCAGTAGGCCTACTGAACGTAGTAATGCAGTATCAACATGCATCTCTTATCAGAATTCATTACATTACAAGTCTATTACATGTTTATTAAGTGACTTTGtacaatacaaataaaaaaaatacagatgagtACATAGCCAAAGCAAAATATGGTGTTGACTTTCCTTTCCCACATAATCTGATGACACGTGGAGTTACAGAAATATTCCTTtcatttatttttgctctttgtAGGACTACTGAATGTATTTTGAACAGTCAATCCTCTTCAGAAACTGGTCAAAGCTTCAGAAAAATTCtccatacaaaaaaaaaacaaaaaacattactTTAGCTGGCTcggtatatataaaaaataaactaactgaaatataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU273577 lncRNA downstream 9625 25811205 ~ 25813187 (-) True G239402
TU273650 lncRNA downstream 15869 25800404 ~ 25806943 (-) True LOC110515676
TU273278 lncRNA downstream 231262 25591351 ~ 25591550 (-) True G239138
TU273272 lncRNA downstream 244117 25577220 ~ 25578695 (-) True G239133
TU273187 lncRNA downstream 281408 25540874 ~ 25541404 (-) True G239050
TU273664 lncRNA upstream 6904 25832012 ~ 25834240 (-) True G239480
TU273697 lncRNA upstream 49703 25874811 ~ 25875963 (-) True G239502
TU273703 lncRNA upstream 73710 25898818 ~ 25899130 (-) True G239504
TU273721 lncRNA upstream 111115 25936223 ~ 25936711 (-) True G239519
TU273722 lncRNA upstream 157501 25982609 ~ 25984116 (-) True LOC110515882
XR_005042112.1 mRNA downstream 12164 25800237 ~ 25810648 (-) False LOC110515676
XR_005042111.1 mRNA downstream 12180 25800237 ~ 25810632 (-) False LOC110515676
XR_005042113.1 mRNA downstream 12180 25800237 ~ 25810632 (-) False LOC110515676
XR_005042115.1 mRNA downstream 12180 25800237 ~ 25810632 (-) False LOC110515676
XR_005042116.1 mRNA downstream 12180 25800237 ~ 25810632 (-) False LOC110515676
XM_021594532.2 mRNA upstream 12529 25837637 ~ 25854424 (-) True LOC110515765
XM_036973359.1 mRNA upstream 58710 25883818 ~ 25895854 (-) False ica1
XM_036973358.1 mRNA upstream 58710 25883818 ~ 25895857 (-) False ica1
XM_021594577.2 mRNA upstream 58710 25883818 ~ 25895863 (-) True ica1
XM_021594587.2 mRNA upstream 86599 25911707 ~ 25918481 (-) True LOC110515870
TU272614 other downstream 586445 25199088 ~ 25236367 (-) True LOC110515384
TU272446 other downstream 856604 24936516 ~ 24966208 (-) False LOC110515208
TU272443 other downstream 870630 24936667 ~ 24952182 (-) False LOC110515208
TU272445 other downstream 875807 24937629 ~ 24947005 (-) True LOC110515208
TU272241 other downstream 1052489 24769704 ~ 24770323 (-) True LOC110515154
TU274740 other upstream 743993 26569101 ~ 26569522 (-) True G240409
TU274804 other upstream 849484 26674592 ~ 26675033 (-) True G240464
TU275014 other upstream 1245947 27071055 ~ 27075883 (-) False LOC110516631
TU275018 other upstream 1252931 27078039 ~ 27079944 (-) False LOC110516631
TU275019 other upstream 1259232 27084340 ~ 27085060 (-) True LOC110516631

Expression Profile