RNA id: XM_021594532.2


Basic Information

Item Value
RNA id XM_021594532.2
length 4597
RNA type mRNA
GC content 0.54
exon number 36
gene id LOC110515765
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25837637 ~ 25854424 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTGCAGAGGAACCGAGCGCTGTCCATCCCTATGCGACATCGCACTTCACGTCGTGCACTAGTCCTAACTGGTGATCAGGACGAGATGCTGCTTCCTAAACCACTCCAGATGATTATACCTAAACCGGCGGCTGTATTTAAATGATAACTAAGGGTGTGAATGTTGAGAAAGAACAACATGGGGAAAGGAGTGGCTCTGTTCCTTCTACTGTTGGCACTTCTTCACGAGGCtataggtcagagaagaagaaaaggaaAATACAGTGTCCTCAGAGATGGAGGAAATGACATGACAACATGTTCCATGGAGGTGGCCTTCATTCTGGACAGTTCGGAGAGTGCCAAGACCTTCCTGTTCGAGAAGCAGAAGTCCTTTGTTCTGCATTTCAGCACTCGTCTCACCATGCTCCAGGTGTCTGGATGGACTCTGAAACTGCGGATGGCTGCTCTGCAGTACAGTAGCTCCGTGTCTATAGAGCACAGCTTCACTGCCTGGCAGGACCTGGATGTGTTCCACAGCAGAGTCAGCTCCATGGCCTACATAGGCCATGGCACCTACTCCACCTACGCCATCACCAACGCCACGCAGCTCTTCACCCAGGAGACCAAGGAGGACAGTGTCAGGGTGGAGGTGCTCATGACTGACGGTGCCGATCATCCGAGGAACCCTGATGTGATCGGAGCAGCGGCAGATGCTAAGGCTAGTGGCGTGAAGCTCTTTGCTGTAGGGTTGTCGGACCTGGCCCGCCAGAGCCAGAAAAGTGCCAAACTTCGGGCTATCGCTAGCACACCGGCCCAGCAGTTCGTCCACAGTCTCACTGACCCCCAGCTAGAGGAGAAGTTACTGAAAGAGTTGGGTGCAATAGCGCTTGAGGTGTGTCCACAGGctaaagtgtgtttgtgtgaaagaggggagagaggcccCCCTGGAAACCCAGGTAAAAAAGGAGATCCAGGATATGAAGGACCATCTGGTCCAAAAGGATCAAGGGGAGAACCTGGAGTCAGTGGCCGACCAGGAAGTGACGGTCTTGAGGGCAGTCCTGGTTATAAAGGTGACAAGGGGGAGATAGGAGACTGTGGCACCCCTGGGGAAAAAGGAGATGAAGGCCCTGGAGGACCTCCTGGCCCACGGGGACCCAGAGGAGACCAGGGTGTTAACGGACCACCCGGGGACCAGGGTCCGGAGGGCCAAACAGGACCTAAAGGGGACCAAGGACCCACCGGTGCATCTGGACCAGCAGGTGACATTGGCATTGGGTTCCCAGGTCCAAAGGGGGCCAAAGGAATTCAGGGAAGACCAGGAACCCTTGGTCCCATTGGAATTGGAGAGCCAGGACAGCCAGGACCCCCAGGACTTGCTGGAgcacagggtaaccagggagctGTTGGGGAGGGGCTCCCTGGCCCAAAGGGGGATCGAGGCTACGAGGGCCCCAGAGGTGAGCGTGGTCTCACTGGTGTTGGGGTCAAAGGTGATAAGGGAAATCCTGGACAGCTTGGATCACAAGGACCGGTGGGAATGCCAGGGGCAGGAATTCAAGGAGAAAAGGGGAGCCAAGGGCCAGTTGGCCCTCCAGGCCCCAGAGGGAATCCAGGTGTGGGACTTATGGGCCAAAAGGGAAGCCAAGGCTTCTCAGGTGAGCCTGGAAtcccaggggagagaggagtcGGGGAGCCAGGACCTAAAGGAGACCCAGGATCGGAGGGGTTGCCTGGTATTCCGGGCCTCTCTGGAGAGGATGGAGACATAGGACAGAAGGGTGACATTGGATTACAGGGGCCCAGGGGACCTGATGGGGCACCCGGAAAAGGTGTCCCTGGAGAAAAGGGGGACCGAGGGGAGCGGGGCTCCAGGGGCCAGCTAGGGGCAGTAGGGCCTGTGGGGCCAATGGGGGCCAAGGGTGAACCCGGAAGTGCTGGACGAGCAGGTACAAATGGACCACCTGGGCGGGGATTACCCGGTATCAAGGGGGACCCTGGTGCGGTCGGCCCACCCGGACATGTTGGTGAACGAGGAATAGGAATCACTGGACCGAAGGGTGAGAGAGGGCTACCAGGGCCCATTGGTCCACCTGGGCTTGAAGGGGAAGGCCTCCCTGGAACTCCAGGGCCCCCTGGAATACCAGGACTGACAGGTGAGACTGGACCAGAAGGAAAAGGTTTACCTGGTCCTAAGGGAGACCGGGGAACTCCAGGCCCCACAGGACCAGCTGGAGCACCTGGAGTCGGGCTAATGGGTCCCAAGGGGTCAGCAGGTCAGATTGGAGCACCGGGTCCACAGGGAGTGCCTGGAGAGGGCATTCAAGGACCAAAGGGGGAGTCAGGATTCCAGGGGATCACGGGCCCCAGGGGGCCCCCAGGACAGGGTATTCAAGGGGATAAGggagacagggggtTCGTGGGTGAACGAGGCAGAaagggggacaggggagagactggagagagaggagctgctggACCTTTGGGCAGACTGGGAGAAAAAGGGGAACCTGGCCTAACAagagaggaggtcatCAAACTGGTCAGATCTATATGTGGTTGTGGGGTGAAGTGCCGTGAGAGCCCACTGGAGATGGTCTTTGTGATTGACAGCTCAGAGAGCGTTGGCCCCGACAACTTCAACGTGGTCAAGGACTTTGTGAACGCTCTGGTCGACCGCGCCTCCGTGAGCCGGGAGACCACTCACGTCGGGGTGGTCCTCTACAGCCACATCAACATGGTGGTGGTCAGTCTGCACCAGCAGGCCAGCCGGGACCAGGTGAAGGCGGCGGTCCGCACTATGACCTACCTGGGCGAAGGCACCTTTACGGGCAGCGCCATCCATCAGGCCAACCAGGTGTTCCGGGCGGCCAGGCCCGGGGTGAGGAAAGTGGCCATAGTGATCACAGATGGACAGGCGGACGAGAGGGACACTGTGAGGCTGGAGGAGGCGGTGAAAGAGGCCAATGGCAGTAACATTGAGATGTTTGTCATCGGGGTGGTGAACGAGAGTGATCCGCTGTACGAGGAGTTTAAGAAAGAGCTCCACCTCATGGCCTCTGACCCAGACAGGGAACACGTGTATCTGATTGATGACTTCAGGACACTTCCTGCCCTTGAGAGCAAGCTGCTGAGTCGGATCTGTGAGAGTGATGGTGGGGCCCAGTtcagctccatccccagctccaGATACTCCCCCGGAACCCCTGGACAAGCTGGGATTGTCAGGGAAACCCCAGAGAGGACTGATACCGACACGCCCACTTTCAATGGAGACTTCAAGAAAACACAGATGGTGCCAGGTCCACCAGGAGAGTCAGACAGAGTCTTTACCCCAACGGGCCCCGAGACCGGGGACCGAGATAACTCGGAGACCTACAGGGTCCCATCCTTTGACAGGGAACCCTTCAAGCGCCTACCAGAGTTCCTTCTTCCGTCAGAGGTGAAGAACCCCACCCACGGTGTGGTCATGACTGGCCCCCAGGCCCCCACCCAGATGCCCCTTCCCGTAGTAAAGCTACCCAGGCTCCCCCCAACCTCTCCACCTCTGCCCCAGGATGCTTTAATACCAGATGAGAGCTGTGGACAGATTCTGGACCCCGGGCCTTGCAGGAATTATGTTGTGAAGTGGTACTATGACACTACGGCTAACGCCTGTGCCCAGTTCTGGTTTGGAGGTTGTCAGGGAAACCAAAACCAGTTTGAGTCGGAGAAGAGCTGCAAAAAAACCTGTGTGAAGGTCTAACAAACACGTTTGTTGACTTGTTTTGAATGCTTACAAATCTACTTGATTGTATTGATGAGACAGATGATATATTTGTGTCAAAGGTGGGTCAATTTCAATATCAGTGCCTTATCTCTTCACCAATACTTTGACATGGGGATAGAAAACTTGTCAAAGAGAGGACTAGGTCATTTTAGGACCAAATGTTCAATCACAATTATTTTGGATTCGTATTCTCTCGTCTTGGAACTGGTGGTGGTAACATGACACCATTTCAATTTAACTTGAATTAAATCGAATTAATCCCCTCAGGGGAAATAAGCTATTTACATAACTCTGTATAAATGTGTGTCCTTGGTTTAACATACCTCCAAGAAATGAGGGAGCTTAACTGTAAGTGAATGAGTCTTAGGGCTTTTGGAAGAAGTATACAGTGAGggaaccattccatttattcatCTTCAAGATGGAGCAATAAGGGCAGTGCGAACCGTATTGGTTTCCAGAAACACTGTTGAACACTAAATAGTAATGTTACAAACGTGGCAGAAGGTCTTTACACTAACCTTTATCCCTGATTAACTTTTCTATAAGTAACTCATTTGTATGAAAACTGACTGCTGGATACTAGTTTATAATACTGCACACCTTCATTAAAGTTAATTAAATGAACCAAGAGAATGTTGTTAATTTGAACATCCAGATATATTTTCACATTTTCAGAAATATTACACTGTTTAATGCATTCGTGTCTGTGGTGGCAAATGTAACCAACCCCCACTCCTCTAACCTTTGCAGGTAAACCGTTCAAAAAGAGATACTTGAATAATTGAAGGATCAGAGAGTGGTTGATCTTGCGTCAGGAAAAGCGTCTTGTCGTCACCTGAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU273664 lncRNA downstream 3397 25832012 ~ 25834240 (-) True G239480
TU273577 lncRNA downstream 24450 25811205 ~ 25813187 (-) True G239402
TU273650 lncRNA downstream 30694 25800404 ~ 25806943 (-) True LOC110515676
TU273278 lncRNA downstream 246087 25591351 ~ 25591550 (-) True G239138
TU273272 lncRNA downstream 258942 25577220 ~ 25578695 (-) True G239133
TU273697 lncRNA upstream 20387 25874811 ~ 25875963 (-) True G239502
TU273703 lncRNA upstream 44394 25898818 ~ 25899130 (-) True G239504
TU273721 lncRNA upstream 81799 25936223 ~ 25936711 (-) True G239519
TU273722 lncRNA upstream 128185 25982609 ~ 25984116 (-) True LOC110515882
TU273716 lncRNA upstream 201151 26055575 ~ 26057001 (-) True G239515
XM_021594530.2 mRNA downstream 12529 25822812 ~ 25825108 (-) False LOC110515750
XR_005042112.1 mRNA downstream 26989 25800237 ~ 25810648 (-) False LOC110515676
XR_005042116.1 mRNA downstream 27005 25800237 ~ 25810632 (-) False LOC110515676
XM_036973359.1 mRNA upstream 29394 25883818 ~ 25895854 (-) False ica1
XM_036973358.1 mRNA upstream 29394 25883818 ~ 25895857 (-) False ica1
XM_021594577.2 mRNA upstream 29394 25883818 ~ 25895863 (-) True ica1
XM_021594587.2 mRNA upstream 57283 25911707 ~ 25918481 (-) True LOC110515870
XM_036973360.1 mRNA upstream 64491 25918915 ~ 26024557 (-) False LOC110515882
TU273578 other downstream 12880 25823356 ~ 25824757 (-) True LOC110515750
TU272614 other downstream 601270 25199088 ~ 25236367 (-) True LOC110515384
TU272446 other downstream 871429 24936516 ~ 24966208 (-) False LOC110515208
TU272443 other downstream 885455 24936667 ~ 24952182 (-) False LOC110515208
TU272445 other downstream 890632 24937629 ~ 24947005 (-) True LOC110515208
TU274740 other upstream 714677 26569101 ~ 26569522 (-) True G240409
TU274804 other upstream 820168 26674592 ~ 26675033 (-) True G240464
TU275014 other upstream 1216631 27071055 ~ 27075883 (-) False LOC110516631
TU275018 other upstream 1223615 27078039 ~ 27079944 (-) False LOC110516631
TU275019 other upstream 1229916 27084340 ~ 27085060 (-) True LOC110516631

Expression Profile