RNA id: TU273722


Basic Information

Item Value
RNA id TU273722
length 543
lncRNA type sense_over
GC content 0.57
exon number 2
gene id LOC110515882
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 25918915 ~ 26024557 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTCGGTGTCTGCCTAGGGACCTCCCTCTGACGGTCCAGTCCTGCATCCTTGCTAAGGACTGTAAGCTGAGCGAGTGGGCAGACTGGGGCCCCTGCTCCAAGGCCTGTCTAGACCCAGACCCTGAGTCCTCCCGGGGCCAACGCTCCAGGACCAGACGCGTGCACCAGTTCTccgtgggggagggggaggactgCCCACCGCTGGAGGAGACGGAGCCATGTGACCCTCAGGGGGATGGAGTACTGCCCTGCGCCACTTACACCTGGAGGACTACAGAGTGGAGCGACTGTAGGGTGGACTCGTTGCTAAGTCAACAGGACCGTCGGCGTAGCAACCAGACCGGCCTGTGTGGGGGAGGGCTCCAGAACCGAGAGGTGTACTGTGTCCAGGCCAACGCCGAACTACTGACCTACCTCAACAACCTCAAAGACAAAGATGGTAATGAGGCGTTTCTATATATAACACTTTTCCATAACAAAGTCTTATCTATATATAAGGGACTGATCCAAATGTATTGGGGGAGGGGCTGGTCCAAATCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU273721 lncRNA downstream 45898 25936223 ~ 25936711 (-) True G239519
TU273703 lncRNA downstream 83479 25898818 ~ 25899130 (-) True G239504
TU273697 lncRNA downstream 106646 25874811 ~ 25875963 (-) True G239502
TU273664 lncRNA downstream 148369 25832012 ~ 25834240 (-) True G239480
TU273577 lncRNA downstream 169422 25811205 ~ 25813187 (-) True G239402
TU273716 lncRNA upstream 71459 26055575 ~ 26057001 (-) True G239515
TU274076 lncRNA upstream 141767 26125883 ~ 26126134 (-) True G239822
TU274092 lncRNA upstream 162104 26146220 ~ 26146503 (-) True G239836
TU274109 lncRNA upstream 202887 26187003 ~ 26187203 (-) True G239853
TU274120 lncRNA upstream 224568 26208684 ~ 26209104 (-) True G239864
XM_021594587.2 mRNA downstream 64128 25911707 ~ 25918481 (-) True LOC110515870
XM_021594577.2 mRNA downstream 86746 25883818 ~ 25895863 (-) True ica1
XM_036973358.1 mRNA downstream 86752 25883818 ~ 25895857 (-) False ica1
XM_036973359.1 mRNA downstream 86755 25883818 ~ 25895854 (-) False ica1
XM_021594532.2 mRNA downstream 128185 25837637 ~ 25854424 (-) True LOC110515765
XM_021594617.2 mRNA upstream 86940 26071056 ~ 26094219 (-) False LOC110515898
XM_021594623.2 mRNA upstream 86940 26071056 ~ 26094219 (-) True LOC110515898
XM_036973399.1 mRNA upstream 183352 26167468 ~ 26184953 (-) False LOC110515941
XM_036973369.1 mRNA upstream 183352 26167468 ~ 26185948 (-) False LOC110515941
XM_036973375.1 mRNA upstream 183352 26167468 ~ 26186017 (-) False LOC110515941
TU273578 other downstream 157852 25823356 ~ 25824757 (-) True LOC110515750
TU272614 other downstream 746242 25199088 ~ 25236367 (-) True LOC110515384
TU272446 other downstream 1016401 24936516 ~ 24966208 (-) False LOC110515208
TU274740 other upstream 584985 26569101 ~ 26569522 (-) True G240409
TU274804 other upstream 690476 26674592 ~ 26675033 (-) True G240464
TU275014 other upstream 1086939 27071055 ~ 27075883 (-) False LOC110516631
TU275018 other upstream 1093923 27078039 ~ 27079944 (-) False LOC110516631
TU275019 other upstream 1100224 27084340 ~ 27085060 (-) True LOC110516631

Expression Profile