RNA id: XM_021594623.2


Basic Information

Item Value
RNA id XM_021594623.2
length 6628
RNA type mRNA
GC content 0.53
exon number 31
gene id LOC110515898
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26071056 ~ 26094219 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCGGTGGAGATAAGGTTCGTGGACGCTCCTCCTAATATGATGCTGCTATCCCTCTTGGAGTTTGTGGTCACGCGCCGCAGTCCGGTGTGCCGGAGAAAGTGATTTTATCAGCTCTTGTGAACCTCTTAGAAACCGACTTTCTTTGACTCTCGGTTGTGTCTTTGATTGTCGTTTATTTCTGTAGGCTATTGGAAAACCGAAGTCAGCTGAACTGAGCATACCCGTTGAGGAGCCAAGGACCTTTGTAAAACCGTGGTCTGTCAGTGGTCATTTTGGAAGGCTTCACATTGGGTCGTGAGCGATGAAACTTAAATTAGTTTTGCATCTTCTGTATTTCCTCATAATTTTACTCCCCAATACAACGTTTTGTCAAACAGTGCTGCCCCCAGAATGTGCTCCGGGGGGTCACTCTCTGCTCCAGAACCCATACCGCAGCACCAGTTTCAGCTCCCGCAGCCTGCAGCAGTCAGCCCTGCAAGACTTCATCTGTGACCATTCCCTCATACCAGGCTGGTACCAGTTCCAGATCTTTGACAAGCCCGCCAGCATGCCCACACAATGTGTGGAGGTGAACCACTGTGGGACCCAGGCCCCAGTCTGGCTGTCTCTGGGGGAGGGCGAGAGTCTTCCGCGGCCCCTGGAGGTGACACAGCTGACAGCCTGTGCCACCTGGCAGTTCTTCCTCAGCAGCAGTAAGGACTGCTGCCTGTTCCGCATCCCTGTCACCGTGCGCAACTGTGGAGACTTCTACGTCTACCTGCTCCAGCCCACCCAGGGTTGCATGGGCTACTGCGCACAGGAGGTGTCAGACTCTGCGGCGGGGGGGTGTGGTCCTGACGAGGTGGAGGTTGATGGAGTGTGTAAAGCCAAACATCCTCCTTCCCCAGCGGTACCTGTGATAGTAGCAGAGCTCTCTGGGAGCATCGTCTACCTGAAGTGCAGCTTCGAGGGCCATAGCCTGAACAGCTCCCTAGGCtatgtggttgcctggtctcgcCTCTCCCCCCAAGGCATCAAAGAGGAACTGAAACAGGAGACTACTGTCCAAACCGTTGCCTTCATCGAGCTGGATGGGATCAACCTCCGACTGGGGGACAAGATTTACTGCAGTTGCTCCAGTTTTTTCGTGGACTCGCCGGACATCCAGGGAGCCCCAGCGGAGAGCGAAGAGTTCTTCGCCGGGATCAGGTTGAGACCCGAGGTGACTACTGTGTCTGAGGATGGGAAGGACTATGAGTTGACTGTGGAGAGTAccatccctgtcccctgtcctggcgatgcctcctcctccaccccagaGGAGTGTACTCTCTCCTTACACCTGAGTACAAACAATCAAGGAGACGATCTGCTGGGTCCAGACGTGGTGTTGTCTTCATGCCGGGTGGATCTCTCCCAGAGCCTGGGGTGTCGTAACGGGGTGTGTAGCCAGGCCCTGGTTCACCTCAGCGCGGTCACAGACTTCCTCAGGGACGGGGACAGGACGACACAGATCTCTGTCAACCCCATCGTCACATCCAACTTCCTCTGGAGCGGCTACACACCACAGAGTGTCCAGATCACAGTGACTGATGTTCCCTCTGCATACTGCTACTCTTTCACTGATCCTCACATCATCACGTTTGATGGCAGGCAGTATGACAACTACCAGATCGGGACGTTTGTGTTGTACAAGAGCACGAGGCAGCCGTTCGAGGTCCATGTGCGCCAATGGGAGTGTGGGAGCGTTGTCCACCACGCCTCGTGCACGTGCGGTTTCGTGGCAAGAGACGGCGGTGACGTCATAGCCTTCGACATGTGCAATGGAGAGCTGGGGGACACCAGGCCGCACCTGTCGGTGAAGAACAGGGACGTGGGCAAGAGCGGCATCCGCATCACTGAGTCTTACCAAGGACGCAAAGTCACAatGACCTTCTCGTCTGGGGCATTTGTGCGTGCCGATGTGTCTGACTGGGGCATGAGTCTGACCCTGAGGGCCCCCAGCTCAGACTGGAGCCAAACCCAGGGCCTGTGTGGGACATATGACGGACAGACCCACAATGACCTCCACACAGCAGGGGGCGCAGCGCTGGACAACGAAGACGTAGCAGCCTTCATCTCTGAATGGAAACTCCCTCCTGGTAGCAGCTTGTTTGACACCGTGACGTCCTATCAGAGCGCTCCAAACCCTCACAGGTACTGTAACTGTGAAGAAGAGTCCCGCCCCACGTCCCCGCGAACCAGGTCTCAGGCAATCCCTGGCTTCGACGACTCCTGTTCTCACCACGGCAACGTGAGACTCCACAGTATCATCCCCACTCTGGATGTCACCGCCGAATACAACTCAGTAGAGCTGTTCAAAGGCCACCACGACCATCCCTCATGGAACTCCAACCAGCACGGCCGGGCCGAGGACACCGGCCCCCAGCCTGTAGAGAGAGGCTCTACCCTAACAGGCTCCAGTCATGGAGCCAACAACCAGAGGAGCCGTGGAAGGCGCCAGTCCTACCAGTTCCTCCCCAACACGCCGTACCAGGGCCTGAGCCAGTCCGACCTGGAGGACTTCACCTACTTCTTCCCTGAGGACCACGAGCTGACTGCCCGGCCCGAGTCCTCCCCTGCCCGCACCTGGCCCACCCCGTCTGGGCTAACACAGCACCAGGCCAGGGTGCAGTGCCAGCGGGCGGTGGCTAATTCCAGCATGGCCCTGGGCTGCGGCCGGCTGTTAGGCCCGGCCATAGTGAGCCAGGCGGTGGCTATGTGCGTCAGCGACCTCCAGCTAAAGGATGACCAGGCCTGGGTGGGTGCTACTCTGCCTCTGCTTGAGAACGAGTGTGAGAGGAGgctagtggaggagagggggaaagagggagagcacCAGGAGATGTTGTCCTTCCTCAAGTGTCCTAATCTATGTAATGGGAATGGCCAGTGCTCCGAGTGGGGGTGTGTGTGCTTCCCCGGGTTCGGCTCCTACGACTGCAGCGTTATCTCTGACCAGACTCCAGAGATCACAGAGCTGGAGAATGAGGGACTGTGTGATGTCAGACAGAGTGACTGCTCCACTGTACAGGTCTTTGGACAAGGCTTCAAAGACTCCTATGAACTCAAGTGTGAATTTTTGAAGGAAAAGTTTGTGGATGGTGAGTGGACCCTGGACGAACCTCAGTTTTCCCTGGCTACCTTCCTGCATGTGTCAGGTTTGGAGTGTCAGCTCCCCCTGGAGTACAGACAACCCAGTGCAGGCCTGGACCTGGATACGCCCACCGACAGACCCCTGGCACGCTGGCAGATCAAAGTGTCCAACGACGGCTACGGCTACAGCAACGCCAAGATCCTGACCCTGTTCGATGGAGCCTGTCAGATCTGCACGCTCAATGCTGACGTTCTCTGTACATCCAGGGAGAAAACATGCAAcattgacagtgtgtgttatgGAGAGGGAGACCTCAATCCCAGCAGCCCTTGCCTGATATGCCGACCAGACTCCTCCAAATACACATGGTCCATCGCTGAGAAGAATGAGCCACCAGTGTTTCAGTCAGCCCAGGGGCGTCTGCAGACGTTCCAGGGGGAAAACTTTGTGTACCAGCTGCAGGCTCAGGATCCAGAAGGCTCCGTGGTGCTGTTCACTCTGGAGTCAGGCCCCAGtgactcctccctctcccccgctGGCCTGCTCATCTGGAAGGCTACTGACACTActgcctcctcctccacacaGACCTTTCAGTTCACTATCACAGACGATTGTAGTGCTGAGACGCTTGCCTCTGTACAGgtctCTCTGCGGCCCTGTGACTGTCTGAACGGAGCTTCCTGTGTTACAAACATTAACCTCCCCCCTGGCAGCGGGGAGTACCTGTGTGTCTGTCCCGCTGGCTTCACAGGGGACAGGTGTGAGGAGGACATAGACGACTGTAAACCCAACCCCTGTCGTCTGGTCAAGTGTATAGACGGACCCAACTCTTTCTCCTGCCTCTGTCCCCCCGGAATGGCCGgtcataCCTGTAGAGAGGATGTGGATGAATGTGCCGCAGAGCCGTGCTTCCCTGGGGTGGGCTGCAACAACACACTGGGCTCATTCACCTGTGGCTCCTGTCCAGAGGGTTACACTGGGGACGGGAAGAGTTGCAGAGTTCACCAGGGTTCTGGCACGGTTAAACCATCAAACCAGGCCCCCTGCTCCAGACAACCATGCTACCCAGGGGTGCAGTGCTTCGAGAGCACACACGTGGCCGTAGGCTACATCTGTGGACCCTGTCCACCTGGGCTCCATGGAAACGGACACACCTGTAGTAGAAGCACCACAACAGGACAGAGGCCAGTTACCACCAACAGAGAAGATGGACGTCCCCAAGTGACAGAAGACTCCAGTAGGGAAATTACTGGcaccacctcctcttcttcctccaccacctcctcccagTACAGGAGGACAACTGAGGGGCCCTCATCGGGTAGCAAGAGAGTCCCCTACGTGGAGAGAAAGACACCTATTAGCCCCCAGGACCAAACTATCACCAGAGTCTCCACCCCCACCAATCACAACCGAGGTCAGAGCAGCAAGGTGGACCTGACCCCTGACCTTAGGTGGGGGTCATTGTCTCCCATAGTGACCTGTGCGGACTCGCCCTGCTTCTCCGGTGTGCCCTGTGAGCCCACAGTCTCAGGCTCCTTCAAGTGTGGCCGCTGCCCATATGGTTACACTGGAGATGGGTTCACCTGCAAAGCTGTGTGCCGGTATCCCTGTGGAAGGAATATGGAGTGCTCTCTACCCAACACCTGCACTTGTAAAGAAGGTTATACCGGATATAACTGCCACATAGCTGTCTGCCGACCGGACTGCAAGAACCAAGGGAAGTGTGGCAGGccagatgtgtgtgtctgtcccgtGGGCTACAGCGGACCAACATGTGAGGAAGCTAACTGTGAGCCATCTTGCCAGCATGGAGGAACCTGTCTGGTCAGGAATCTCTGCACCTGTCCCTACGGTTACGTGGGGCCAAGATGTGAAATCATGGTGTGCAACAGGCACTGTGAAAACGGAGGGGAGTGTATTTCTCCCGATGTGTGTAAGTGCAAGTCTGGCTGGTACGGACCAACATGTAACTCAGCTGTCTGCAATCCAGTGTGTTTGAACGGTGGGACTTGTATCAAACCCAACATCTGTGCCTGTCCCGGTGGCTTCTATGGCTCCCGATGTCAGATTGCTGTGTGCAGCCCTCCCTGTAAGAACGGAGGTCAGTGTATGAGGAACAACGTCTGCTCCTGCCCCGGGGGTTACACAGGGAAGCGGTGTCAGAAGAGTGTGTGCGACCCAATGTGCATGAACAAGGGGAAGTGTGTGGGGCCCAACTCCTGCTCCTGTGCCTCTGGGTGGAGGGGGAATAGGTGTAACATTCccGTGTGCCTGCAGAAGTGTAAGAACGGTGGTGAGTGTGTGGGACCCAACACCTGCCACTGTCCCACAGGATGGGAAGGCCTACAGTGTCAGTCCGCCATCTGTAAGCAGAGATGCCTCAACGGGGGAAGGTGTGTCCTGCCCAACTTCTGCCACTGCCGCAACGGGTACACTGGCGTCACCTGTGGGTTAAAGGCCCCGCTTGCATAAGGGAAATTACTGAAGATGCAGAAGTTTTACAAAATACACAGCGCAAATGGAGTCtattaggctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctttgtacaTGAACAGGGGGACTGGATATATTGCACGTATCTAATTGTCCCTGTTTTGTTACTACCTCAATGCTCAAGGTAGCACATTGATGTAATGCCCTTGCATAAGAAATGCATAACATATTCATAAACAATGCATAATACTGTCTTAAACACTGCATATTCATTTAGAAATGTTTATGCCAATCGTGTTGATGTCTCAAAAGctacgtttacacaggcagcccaagtctgatctttttccactaattgatcttttgaccaatcagatctgcTCTTTTGACAgtaattgggcaaaagatcagaaatgTTCTGCCTGTAAAACGAAGCCTAACTATGTAATCTAACATAGACATTAATTCATGTATTTTAATGcataaaatgtgttttataatCCGTATCCAAGGCTTTTATACAAAAGCGTTACTGCACATAGTATTATGTTGGAGTAAGAGAAGAGAATCAGATGAAAAACTAGTTGATGGTTtattgaagaacaatctggcttTATATGATATTAATACCCACTTTTCTATTTGTTTTGTTCCTTGTTATTGATTTGACCTAAGTTTTTTTCCACTCTGGTTTATTGTGGTactgaaagtttttttttttgcctaaaCTATTGTGCACTGTTGTTTCATACTTAATATGTATGGAGAAATAATAATATTCTTCTTTTTACGTCACACCTGCCTTGGAAATGTTATTAGCTTGTTTGATTTTTAGGGCCACTTGCCTGCAATTGTTTTGTGACTGTTGACGAGATCTGATGTAAGTATCAATTCAGATATACTTGATCACTTttgtacattatactgtacatagGTCAAAACATGTGTTATTTTAACATTTACACCGCGTTGTTGTAAATCACGCATATGGAAACAAAATAAAAAGTTATTGTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU273716 lncRNA downstream 14055 26055575 ~ 26057001 (-) True G239515
TU273722 lncRNA downstream 86940 25982609 ~ 25984116 (-) True LOC110515882
TU273721 lncRNA downstream 134345 25936223 ~ 25936711 (-) True G239519
TU273703 lncRNA downstream 171926 25898818 ~ 25899130 (-) True G239504
TU273697 lncRNA downstream 195093 25874811 ~ 25875963 (-) True G239502
TU274076 lncRNA upstream 31664 26125883 ~ 26126134 (-) True G239822
TU274092 lncRNA upstream 52001 26146220 ~ 26146503 (-) True G239836
TU274109 lncRNA upstream 92784 26187003 ~ 26187203 (-) True G239853
TU274120 lncRNA upstream 114465 26208684 ~ 26209104 (-) True G239864
TU274160 lncRNA upstream 226096 26320315 ~ 26320540 (-) True G239904
XM_036973360.1 mRNA downstream 46499 25918915 ~ 26024557 (-) False LOC110515882
XM_021594587.2 mRNA downstream 152575 25911707 ~ 25918481 (-) True LOC110515870
XM_021594577.2 mRNA downstream 175193 25883818 ~ 25895863 (-) True ica1
XM_036973358.1 mRNA downstream 175199 25883818 ~ 25895857 (-) False ica1
XM_036973359.1 mRNA downstream 175202 25883818 ~ 25895854 (-) False ica1
XM_036973399.1 mRNA upstream 73249 26167468 ~ 26184953 (-) False LOC110515941
XM_036973369.1 mRNA upstream 73249 26167468 ~ 26185948 (-) False LOC110515941
XM_036973375.1 mRNA upstream 73249 26167468 ~ 26186017 (-) False LOC110515941
XM_036973368.1 mRNA upstream 73249 26167468 ~ 26186018 (-) False LOC110515941
XM_036973390.1 mRNA upstream 73249 26167468 ~ 26186018 (-) False LOC110515941
TU273578 other downstream 246299 25823356 ~ 25824757 (-) True LOC110515750
TU272614 other downstream 834689 25199088 ~ 25236367 (-) True LOC110515384
TU272446 other downstream 1104848 24936516 ~ 24966208 (-) False LOC110515208
TU274740 other upstream 474882 26569101 ~ 26569522 (-) True G240409
TU274804 other upstream 580373 26674592 ~ 26675033 (-) True G240464
TU275014 other upstream 976836 27071055 ~ 27075883 (-) False LOC110516631
TU275018 other upstream 983820 27078039 ~ 27079944 (-) False LOC110516631
TU275019 other upstream 990121 27084340 ~ 27085060 (-) True LOC110516631

Expression Profile