RNA id: XM_036973426.1



Basic Information


Item Value
RNA id XM_036973426.1
length 4939
RNA type mRNA
GC content 0.46
exon number 24
gene id LOC110515948
representative False

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26188922 ~ 26252950 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCTTTTTATCACTCTCgcccgctctctctcacacacacacacacacacacacacactcacacacactcccccttTTTCTATTGGAGTTTCTATCCTCTAGCACTGACTGCttctaaacaaacacacacttacacacacaaacacagccacacacgGATAATCttacacacacagcagagagggggggtctaacacacacacacacacacacacacacacacacgatctgaTGACAAACCCTCTACGCTCTCCTCCAGTACATTCAGCAGGGATGTGAGTGagggtgtgtatttgtatgtgagCGTGTGAGAAAGACCAagatgcgtgtgtgtgagagtgtgtaagCGTcatctgttaaacatctgtctgGAAGACTACTCCCTGCTCCCGGCAGTTTGCCTTGGCTATCCAGCAGAGAGTGGACTGTGGTCTGATAGTTTGGGGATGTGAGGGAGAAGAGGACTCATCACAATGACCAACCAGGACAAGTGGGTCACTCTGACCCCAGCTGAATTCTCCCTTCTGCAGGAGTACGCTCAATaCTCAACCAAGAAGCTGAAAGATGTGCTGCAGGAGTTCCATGGAGACGGAGTGTTGGCGAAATATAACCCAGAGGAGGAGATTGACTTTGAAGGCTTCAAGGTCTTCATGCAGACGTTTCTGGAGAGCGAGCTGGCAGAGGAGTTCTGTCAACACCTCTTCTTATCATTCAGTAACAAGGGACCAAAACCCAGCCCCACTTCCATAGACAAGCCCAGAGTTACTGGCCTCAAGTTGATCAAAGGGAACTCGACCCCTCTGAAGGTGCCCCCTCTACCCAGGACTCTGCCCAGACCTCTAGGCATGGTTCAACTGAAGGACATCGTCTGCTACCTCTCACTGCTGGAGGGTGGCCGACCCGAGGACAAACTGGAGTTTATGTTTCGTCTCTATGATACTGATGGGAATGGGTCTCTGGATAGTTCGGAACTGGAGCACATCATCTCTCAAATGATGCATGTTGCTGAGTACTTGGAATGGGATGTGACAGAACTGAAGCCGATTCTGCAGGAGATGATGCAGGAGATTGACTATGACCATGACGGTACAGTGTCTCTGGAGGAGTGGATCCAGGGAGGCAGCACGACCATCCCCCTGCTAGTACTACTGGGCCTAGAGACGAATGTGAAAGACGATGGGCAGCACGTGTGGAGACTGAAGCACTTCAACAAGCCGGCCTACTGTAACCTGTGTCTGAACATGCTTATAGGCCTGGGCAAGCAAGGGCTGTGCTGCTCATTCTGCAAGTACACTGTCCATGAGCGCTGTGTGGCCCGTGCTCCTCTGTCGTGCATCAAAACCTACGTGAAGAGCAAGAAAAACATAGAGGTGATGCACCATTTCTGGGTGGAGGGAAACTGCCCGACCAAGTGTGACAAGTGTCACAAAACCATTAAGTGTTACCAGGGTCTGACTGGGCTTCACTGTGTGTGGTGCCAAATCAcgCTTCACAATAAGTGTGCCTCCCATGTGAAACCTGAGTGTGACTGTGGACCACTGAAGGACCATGTCCTGCCCCCCAACACAATCTGTCCTGTCATACTGGAAAGGCAGTCTATGGTGAGGAAAGATTCCAGATCCAGCCAATCAGGGGGCAGAGGGAAGATGCAGAGAGCCAACTCAGTCACAGTGGATGGCCAAGGACTACAGATCACAACAATAGAGGGAACTCATCCTCTGCTAGTGTTTGTGAATCCAAAGAGTGGAGGGAAGCAGGGCGACAGgatcTACAGAAAATTCCAGTACCTCTTAAACCCTCGGCAGGTATACAACCTGGCCAAGAACGGACCCATGCCTGGGTTGAATTTCTTCCGAGAGGTTCCAGATTTCAGAGTGTTAGCTTGTGGTGGGGATGGGACAGTCGGTTGGATTCTGGATTTCATAGATAAGGCCAATCTGGACAGGAACCCCCCTGTGTGTGTACTTCCCCTTGGAACAGGAAATGACCTGGCAAGGTGTCTGCGATGGGGAGGAGGTTATGAGGGAGAGAGCATTCTGAACATCCTGAGGGACATAGAGAACAGCTCTGAGGTGATGTTGGACCGCTGGAAGATTGACGTCACACCCACAgacaaagaagagaggggagactcTGTGCCTTACAGCATCGTCAACAACTATTTCTCCATTGGGGTGGATGCTTCCATTGCACATCGGTTCCACATGATGAGGGAGAGACACCCTGAACGCTTTAACAGCAGAACAAAGAATAAGCTGTGGTACTTTGAGTTTGGCACTTCTGAGACCTTCTCGGCCACATGCAAGAAGCTCCACGACTTTCTGGAGGTTGAGTGCGATGGCATCACTCTGGACCTAGACAGCATCTCTTTGGAAGGCATCGCCATTTTAAATATTCCCAGCATGCATGGCGGCTCCAACCTGTGGGGTGAGAGCAGGAAAAGGCGGAGCAACCGCCGGGGAGGGAAGAAGACCCAGGATAAGAGGACAACAGTGCTGGACCCCAAAGAGCTTCAATTTGCTGTCCAAGACCCGTCAGACCAGCTGTTGGAGGTGGTGGGTCTGGAGGGAGCCATGGAGATGGGACAGATCCACATCGGCCTGAGGAGCGCAGGAAGACGCCTGGCCCAGTGCTCCTCGGTCACCATCAGGACCACCAAAGCCCTCCCCATGCAGATTGATGGAGAGCCCTGGATGCAGACtccctgtactATTGAAATAGTGCATAAGAACCAGGCCCCGATGTTGATGGGTCCCCCACAAGGCAACAGCTTCTTCTCCTCTGTGATCCGACGAACATGCAGCGAGAGcaaagactgagagagagagagacttagccTTCGGCCTCTTCTCCAGAGAATCAAGCCGTCTTACCCACGGAGGTCGCTAGGTGTGATGCCAGGATGCTAATTTGTTAGCCTAGCTCCATTTGGGTCGCTAGGGTATGATGCTAGGATTCCAATTTGTTAGCCTAGCTCCATTCAATAGCATACTGTAGCTGTGCATGCTACTTCTGCCATGGAAATGTCAGTGCCCCCTTACTTATTTAGAGTGAGGAACTACAAGGACAGAAACTTTGGTTCATGATGCGGTGCCACTCCACAATGCCAACACAGTGGTATTGTCCCTCTGGAACAGTTGTTTACCGTTCCAGATTTCAACTTTATACTGTTACGATGGCATGTTTTTTTCTAAATGTCATTTTTATAGTGGTCTAGTGAAACGTGCCATGTGGATCAAGTCCTTTTAAGGAAGTAACACATTTCTGTCaatcattgaaaataatttgtATGATAAGGTATTGATTTATGCGGCGTCattgttttgaatgtgtttgtgtttgcgctTGAACACCCCCAATGCATGATGGACATTGGATTACTGTTTATGAGGTGAACATATCTTTCAGGGTGCATAAGGACAGTGATGACATTGAGTTAACATATACTATAAGCATTTGGTCTAAGTTAACGTTTCAGGTTATTTGCTTCGCATTTCTTCGGGCACTGACTATCTCTTCAATGTTGACTTCATCAGAGAATGGATTTAAGAATCTCAAAGGCTCTGTTAGGTTTCCCACAAAACATGTTTGACAGGTTATTGCTCAAATGTCTTGCAGCTGGATCATAGAAACTATTTCCATTAAGGCTCATAGACCAATTAAGGAAAATGAATTGGTAACAAATGCATGCACATGTCACATGACATATACACTTTTTCTACATTGCACGGGATATCCAGACAATTTCTTCTAATTGTGCTGTGCACATCTTGAGTTGCATGGATAACCAAGATCTATTTTTGAACGTGGAATTGTACTGTGTTGTTCATTTTCGAAGTCAAACACTTTGTCAGGGTTCAACTACTGCCTTTCTCTCACACTAAATGAAATCATATCAACCTGAAATCAACCGTTTGTGGTCAGGGAGTcctgtttttcaggggcaggtaCTCAGGTATTTTTAAGATATAATATTGCTCAAAGGTTTATACACTTAACTATTATTATAGAAAAACCTTTCAAATAATAGAATTGAGTACATCATGTAGTACAATTATCACAGTCAAGACTCCAGAGCAGGTTTTGACCTCCTTAGGTCATTGACTTGTTCAGTCTTTTTCAGCGGTTTGCCATTGAGCATGTTTACAATACATGACTCATACATGCATACATTAACCAATTAGAACTCAAGTCCAAATGTGAAATTACTATTGACATACTTGAGCTAGAATTGAGGAATCAATCTTGAGAATCAGTCTAATCAATTTGCATGACTGGGTTATTCAGAGACAAGAAGAAGCTCTGCATTCTCCCACTAGATATCTGCAGAGGCTATTTGGTCTGGCACATGATGTGCAGATAAGTAAGACTAACCATAAGAATGGCCTGATATTGTTAACCTGAACAGTATATTGTATTCTTAATTTCAGAAATCTATAGTGACTTTTTATTATATTGACATCATTCGTCCAGTTTTCACCAAAACCTCTGACCCATATCTCAATGTAATATACTACCAAAGATAAACAGAACGAAAGGCCATATTCAGATCAGATCCATACACTATCTGAAATTCTTCAAATCTGTTACACATGAATGACACCCAAACAGTACATGAATAGATACAAGTTTTCAAGTAAAATGCATTCCTGCATGTTTTCTAAGTGCAATTCAATGATGGAAGATGACTGTATTGGATTTCTGTCTCTGTTCAAAGGCCCATCCTGCTTATGGAAGATTTGGTTCCACCAACTTTTCCATTACTTTGCTTTGTATGTGCAGTGTTTGCTTTGTACAGTGAAGTTGTATTTTTGtacacaatgttatttttctGCGTAAAGCATTGCTCTTCTCTGTAAATCACGCCATTGTGTTCTTCTGTTCAAAAACTGAACAGAACATGAAAACAATTAAATGTTGTTGTCGTTTGACCTGCTCACC

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU274109 lncRNA downstream 1719 26187003 ~ 26187203 (-) True G239853
TU274092 lncRNA downstream 42419 26146220 ~ 26146503 (-) True G239836
TU274076 lncRNA downstream 62788 26125883 ~ 26126134 (-) True G239822
TU273716 lncRNA downstream 131921 26055575 ~ 26057001 (-) True G239515
TU273722 lncRNA downstream 204806 25982609 ~ 25984116 (-) True LOC110515882
TU274160 lncRNA upstream 67535 26320315 ~ 26320540 (-) True G239904
TU274198 lncRNA upstream 117972 26370752 ~ 26370991 (-) True G239939
TU274179 lncRNA upstream 119702 26372482 ~ 26373829 (-) True LOC110515999
TU274677 lncRNA upstream 162622 26415402 ~ 26443224 (-) True G240348
TU274700 lncRNA upstream 213655 26466435 ~ 26466854 (-) True G240371
XM_036973370.1 mRNA downstream 2888 26167468 ~ 26186034 (-) True LOC110515941
XM_036973385.1 mRNA downstream 2903 26167468 ~ 26186019 (-) False LOC110515941
XM_036973368.1 mRNA downstream 2904 26167468 ~ 26186018 (-) False LOC110515941
XM_036973390.1 mRNA downstream 2904 26167468 ~ 26186018 (-) False LOC110515941
XM_036973375.1 mRNA downstream 2905 26167468 ~ 26186017 (-) False LOC110515941
XM_021594663.2 mRNA upstream 22982 26275762 ~ 26316108 (-) True LOC110515972
XM_021594668.2 mRNA upstream 64794 26317574 ~ 26331168 (-) True LOC110515986
LOC110515999 mRNA upstream 98380 26351160 ~ 26387451 (-) False LOC110515999
XM_021594671.2 mRNA upstream 137031 26389811 ~ 26392182 (-) True LOC110516015
XM_021594678.2 mRNA upstream 144036 26396816 ~ 26401667 (-) False LOC110516029
TU273578 other downstream 364165 25823356 ~ 25824757 (-) True LOC110515750
TU272614 other downstream 952555 25199088 ~ 25236367 (-) True LOC110515384
TU272446 other downstream 1222714 24936516 ~ 24966208 (-) False LOC110515208
TU274740 other upstream 316321 26569101 ~ 26569522 (-) True G240409
TU274804 other upstream 421812 26674592 ~ 26675033 (-) True G240464
TU275014 other upstream 818275 27071055 ~ 27075883 (-) False LOC110516631
TU275018 other upstream 825259 27078039 ~ 27079944 (-) False LOC110516631
TU275019 other upstream 831560 27084340 ~ 27085060 (-) True LOC110516631

Expression Profile


XM_036973426.1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.4.
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XM_036973426.1 Expression in each Bioproject

Bar chart with 13 bars.
XM_036973426.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 4.
End of interactive chart.