RNA id: XM_036973531.1


Basic Information

Item Value
RNA id XM_036973531.1
length 3371
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC110516068
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26524379 ~ 26533272 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caactcaatattaggagtgttaggtatactcagtgtatatatttttctatttaatGATCTCCACCTCACATAAGGCTACTAAATATTGAACAATTTAAACAATTGACCCGCTCCCCAAAACACGTGTAAATaatggactataaattgtgcctaaCTGTATTATACTTATCCTAAAAGTATAATACTTAGCCATTTACTTTGTGGTCGTATTCTTATCTTCTATTATTGTCGAGAAGGAACGTGCAAGTAAGACGAGGCATGGCTACGGAACCAGTAAGAGTTCAAACCAAAAGACGAGTAACTGGCTAGAACACAGCTAGTTGGCTAAAAAGAAAAGCAAAGCTACCGTTATTTGGTTAGCTTGCTAACTGGGCCTGGAATGGAGCCAGGAGATTTGCGTGTGAGCCCAGCCGGCTCAGGAGACCCCGAAGTGGGCGAATGGAGGCAAGAGACCCCTGGTGGGGATGCTGAGGTGAAGGGTGGGGAACAAAATGACAAAGAAATTAATGGAGATGCAGCTGAATCGGTGCTCAAAGAGAAAGACACCTTCGAGGGAGAAGAGTGTAAAGAGAAGAACGAAGGTGAACTGCACAGCCCATATGAAGAGGAATTGGATCCCAGAATTCAGGAGGAGTTGGAACACCTCAACGAGGCCAGTGTAGAGATCAACCAACTAGAGCTGCACTTGGATGATGCCAGATCAGGTTACAGGAAGATCCTCACAGACTCAGCCAGAAAACTGAACGCCCACAGCTCCCAGCTTGGTACCTGCATCGAGAAGGCCAGGCCCTACTATGAGGCTCGTCGACTTGCCAAGGAGGCTCAGCAGGAGACCCAGAAGGCAGCGCTGAGCTATGAACGGGCCGTCTCCATGCACACGGCTGCCAGGGAGATGGTGTACGTGGCAGAGCAGGGCCTCATGGCTGACGGCAGGAACACCCTGGACCCCACCTGGCAGGAGATGCTCAACCATGCTACCTCCAAGGTGAACGAGGCAGAGGAGGAGCGCCTACGCAGCGAACGGGAGCACATGCGTGTCACCCACTCTTGTCAGACGGCAGAGGCTCGAGTCCAGACCCTGCAGAAATCTCTCAAGAGGGCCATCATTAAGTCCAAGCCTTACTTCGAGCTCAAGGCCCAGTTCAACTACATACTTGAGGAGCATAAAACCAAAGTGATGCAGCTGGAGGAGCATGTGACCAAAGTGAAAAACCGCTACTCTGTCGCCCTGCACAAACTGGAGCAAATCAGCGAGGCCATTCACGCTCAGAGGGGACGGGACCATATGGAAGATGGACAAACCATGGCCTGTGGTGGGCGGAGTCCCCCTATTGGGGCGGAGTCggacagtgtggtgtgtggtgccgAGGGCGGGGCATGTGGAGGAGGGGCAATAGAGACTGACAGGATGGACATAAGCGGAGTGGTGGATAAGAAAATTGGGCTGGTGGAGAAATACAGGGAGAACGGGCGAGAGAGGCCCgagacacatggagagagagcagggtcaGATTCCCTCTCCGTCTTCAGTCTGCAGACCATCGCTTCTGACCTGGAGAAATGCGATTCCATCGAACACCTCGGGGAATTTAGCGATGTGGGCAGTCTGCctggggaggatggagagattgagagggaggagagcgggggagggagggaaagagaaagaagggAAGGACAAATGCAGCGCCAACAGCAGTTCCTGAAGCAACATCACAGGAGCTTCAGCTTGTGAGACCTGTCCTTCTCGCTTATAGTTTATCAATTGAAAAGAAAACAAGTGTCCGGTCTAGCTAGCTCATTATCCTGGCAAAGAGAGCAGATCTGATTTTCCTATCTAAAGTAACACATTTAAACGGGTGTATGATACTACGTAGTAATGAAGAACAGGTACGCTGACAAGTAAGACCTGACATTATAAGGAACCTGACAGGTTTTGCATCGTATTACAACACTACTGAAACTCCTAAACCGTACATGCCTCTGAGATTAGCTGCTTTACTTCCCTTATTCTGGCAATAAGGAAACCTTAGACAGGTATGTCCTAGTGCATGAAGGAACAATCCAAGTAAGAGACTACAATAAACGTGACAAACGGGGTCCCTATTCAATCTAAATGACGTAACTGAATTTCTGGTGTAAGTTAAAAACAATGTTCTTGTGGAACAAAAAAGTATGTGTGAATTCATATGCACGTCGAATCTAGATTTTTGTTTCACACTGTAAATATTGTTTATTTTAGTACATAAATTCAAACGTGTATTGCAAAAAGTGCTAGAAGAATTCGATttttaatatattattataataatttaaaaaaatgttttttttcataTTCTGGAAACCTGGTTTCAGGGTTCGAATCAAAAGGACCCCAAAACACACTAAAGAGGGTTACAAACTCCATTCTGACAACTTGTTTGATGACAGAAAGCACTCTGGACTATTTATTTGGACTTTTGTTATATGTATACTAGTATTCAGGGCTAACTAAAAAAATGGAGTAAATTGTTCATAAATGATCACGCTGACATAATATTATATTTGACTATTTTAAGCCCATCATTTTAAGATCCTATTGTttagtattttttaaataaaataatttcccAATATATTTCCCAATATATTGTTTATTTAGAGCCACCTGGGTCGTAAACTGAAATGTGCCTTGCCTTTGACACAGTACGACGCAAACAAAGACAGCATAGCACTGGCTGCAACAGCATACTGTTCAAATTTGTGTATACAGTATTAAACTGTGGTCAACAGTTGAGAAATACTCCCATGAAGGACATGCTTTTGACAATATGATTAATTTGAATAATCTATGAGTCATCCTAACACTGTTTTGTCTAGACTTgttctattttttatttgattaatttGAATATGTTGTCTGTGTactgctttggcaaagtggaggGTACAAGAAATGTATTCAATAGATTAAATGTAAGTTTGTGTATAATTACAACATTATAGAGAAACTAATGAAATGTACAAATGTATTTGAATGTCCTTGAATAGTTATTTTAAAGGGATCTTATTTTAAAGGGATCTTATTTTAAAGGGATCTTTATTTAATGCTGGTTATCTGCTGAATTCCTGATTTGACCTCCGTCTGTCCCGCTCTTTACATACTTCCAATAtatccatctcttcccctcattctctcaaccatagaaatagaatgactagtaATTGTATTTCTGTGCTTTCAACACTtcagtcattgtccatttgtctTCCTCTTTATTTATTCATAAAGTGGTGCAGTAGTGTCACCCAGCTATATAGTACAGTTCACTGTTGTTATTTACATGTATGCAATATCAAACAGTTAAACAATAAAATAAGAGGAATCTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU274715 lncRNA downstream 50336 26473769 ~ 26474043 (-) True G240384
TU274700 lncRNA downstream 57525 26466435 ~ 26466854 (-) True G240371
TU274677 lncRNA downstream 81155 26415402 ~ 26443224 (-) True G240348
TU274179 lncRNA downstream 150550 26372482 ~ 26373829 (-) True LOC110515999
TU274198 lncRNA downstream 153388 26370752 ~ 26370991 (-) True G239939
TU274707 lncRNA upstream 2570 26535842 ~ 26536608 (-) True mgat1a
TU274733 lncRNA upstream 5654 26538926 ~ 26539245 (-) True G240402
TU274734 lncRNA upstream 6272 26539544 ~ 26541140 (-) True G240403
TU274714 lncRNA upstream 34422 26567694 ~ 26567971 (-) True G240383
TU274743 lncRNA upstream 39732 26573004 ~ 26573783 (-) True G240412
XM_036973530.1 mRNA downstream 319 26475098 ~ 26524060 (-) True LOC110503983
trnaa-ugc-3 mRNA downstream 62457 26461849 ~ 26461922 (-) True trnaa-ugc-3
XM_036973513.1 mRNA downstream 100014 26408484 ~ 26424365 (-) True LOC110503977
XM_036973496.1 mRNA downstream 100056 26408484 ~ 26424323 (-) False LOC110503977
XM_036973505.1 mRNA downstream 100056 26408484 ~ 26424323 (-) False LOC110503977
XM_021594697.2 mRNA upstream 372 26533644 ~ 26536641 (-) False mgat1a
XM_021594722.2 mRNA upstream 8442 26541714 ~ 26547841 (-) True LOC110516135
XM_021594706.2 mRNA upstream 14818 26548090 ~ 26567371 (-) False dhx16
XM_021594715.2 mRNA upstream 14818 26548090 ~ 26567372 (-) False dhx16
XM_021594711.2 mRNA upstream 14818 26548090 ~ 26567630 (-) True dhx16
TU273578 other downstream 699622 25823356 ~ 25824757 (-) True LOC110515750
TU272614 other downstream 1288012 25199088 ~ 25236367 (-) True LOC110515384
TU272446 other downstream 1558171 24936516 ~ 24966208 (-) False LOC110515208
TU274740 other upstream 35829 26569101 ~ 26569522 (-) True G240409
TU274804 other upstream 141320 26674592 ~ 26675033 (-) True G240464
TU275014 other upstream 537783 27071055 ~ 27075883 (-) False LOC110516631
TU275018 other upstream 544767 27078039 ~ 27079944 (-) False LOC110516631
TU275019 other upstream 551068 27084340 ~ 27085060 (-) True LOC110516631

Expression Profile