RNA id: TU274707


Basic Information

Item Value
RNA id TU274707
length 421
lncRNA type sense_over
GC content 0.37
exon number 2
gene id mgat1a
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26533644 ~ 26536641 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGAAGTCTGCACTCTTGTGTCTTGAGAAAACAAATGGCAGAAATGAAACTGTCGAAATGAAGTTCGTTTGATAATAAAAACAATCAAAATTAAAGTGTGACGACGATACATTATTTCATCTTCACTTACTTATTGATCCTGCATATTGTCATCGAAGAGGTTAGTGAAACGAAGGAAGAAATGGCTACAGAGACCGAATTCTACGTTATGAAACTGGAGATTGACAGGGAAGGTATGAACTGAAGACCAGCGCTTTCATCCCCTGACCAGCTCACCTACCTCCTGTCAAAGATGAATCCAGCTCTCCCTCAATTTTTCCCTCATTCCTTATACATATTCCTTGTCTTTTTTTGACTCAAGCTTTACCTAATTATGTTACCCTGTTTATGTTTTCATTACTTTTAATACAATATTTAAACT

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0000139 Golgi membrane cellular_component
GO:0008375 acetylglucosaminyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU274715 lncRNA downstream 61799 26473769 ~ 26474043 (-) True G240384
TU274700 lncRNA downstream 68988 26466435 ~ 26466854 (-) True G240371
TU274677 lncRNA downstream 92618 26415402 ~ 26443224 (-) True G240348
TU274179 lncRNA downstream 162013 26372482 ~ 26373829 (-) True LOC110515999
TU274198 lncRNA downstream 164851 26370752 ~ 26370991 (-) True G239939
TU274733 lncRNA upstream 2318 26538926 ~ 26539245 (-) True G240402
TU274734 lncRNA upstream 2936 26539544 ~ 26541140 (-) True G240403
TU274714 lncRNA upstream 31086 26567694 ~ 26567971 (-) True G240383
TU274743 lncRNA upstream 36396 26573004 ~ 26573783 (-) True G240412
TU274763 lncRNA upstream 68599 26605207 ~ 26605715 (-) True G240431
XM_036973531.1 mRNA downstream 2570 26524379 ~ 26533272 (-) True LOC110516068
XM_036973530.1 mRNA downstream 11782 26475098 ~ 26524060 (-) True LOC110503983
trnaa-ugc-3 mRNA downstream 73920 26461849 ~ 26461922 (-) True trnaa-ugc-3
XM_036973513.1 mRNA downstream 111477 26408484 ~ 26424365 (-) True LOC110503977
XM_036973496.1 mRNA downstream 111519 26408484 ~ 26424323 (-) False LOC110503977
XM_021594722.2 mRNA upstream 5106 26541714 ~ 26547841 (-) True LOC110516135
XM_021594706.2 mRNA upstream 11482 26548090 ~ 26567371 (-) False dhx16
XM_021594715.2 mRNA upstream 11482 26548090 ~ 26567372 (-) False dhx16
XM_021594711.2 mRNA upstream 11482 26548090 ~ 26567630 (-) True dhx16
XM_021594751.2 mRNA upstream 71544 26608152 ~ 26621795 (-) False LOC110516190
TU273578 other downstream 711085 25823356 ~ 25824757 (-) True LOC110515750
TU272614 other downstream 1299475 25199088 ~ 25236367 (-) True LOC110515384
TU272446 other downstream 1569634 24936516 ~ 24966208 (-) False LOC110515208
TU274740 other upstream 32493 26569101 ~ 26569522 (-) True G240409
TU274804 other upstream 137984 26674592 ~ 26675033 (-) True G240464
TU275014 other upstream 534447 27071055 ~ 27075883 (-) False LOC110516631
TU275018 other upstream 541431 27078039 ~ 27079944 (-) False LOC110516631
TU275019 other upstream 547732 27084340 ~ 27085060 (-) True LOC110516631

Expression Profile