RNA id: XM_021594751.2


Basic Information

Item Value
RNA id XM_021594751.2
length 2243
RNA type mRNA
GC content 0.51
exon number 10
gene id LOC110516190
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26608152 ~ 26621798 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTTAGAGTGACTTCACTTCCCAatttagagtgagagagagagaaaaaagctgCCATCCGGTTATGGACTAAGCAAGAATTGTTGCTGCAATGGTTTGCGCCAAAGGGTAAATGCGCTTGTGTATGGGTTGATGCGATTCAGTCAGGCTATCCAGACTAGTTATAACGTGTTTAAATGACTAAATGAGAATCAACGACTGAGTGACTGCTACAATGGACTGTACGATAAAGGAAGCACTGTCCGTGGTGAGCGAGGACCAGTCCATTTTCGAGTCGCCCTTCCCTGCCGCCACGACCATGCACATGAAGGGCGAGATGACGTCACCGGGAAGCTTCAGCCAGGCCTCCGAAGAGAGCCAAGAACCCACCGAGCCGGAGTGGGCCGGGCCGGGAGCACAGAACCCTGGGAAAAGAGGAGAGCACATCAACGGAACCAGTCGTGAGTCCCCTGTGGACTGCAGTGTGACCAAACGCTCCAGACACATGAGCAGCAACGAAGGGGGTCAGCTGGCCTACCAGGCCTCATACCCTGAGCCCCGCGCCAGCCCCCAGACCGCCACCACGCCCAACAGCgccacagaggagaagagagtcaTAGTGCCCGCAGACCCTGAGGTGTGGACCCAGGACCATGTGCGCCAGTGGCTGGACTGGGCCATCAAGGAGTACAGCCTGGAAGAGGTGGACATCATGCACTTCCACACACTGGAGGGCAAGGCCCTCTGCAAGATGACCAAGGAGGATATGATGCGCCTCACGTCCGCCTACAACACTGACATCCTGCTCGGCCACCTCAATTACCTCCGACAGAGCAGCCCTACTTTCTCCTACCCCACAACTCCAACCAACAACACACAGCAACAACCCAGACTACAGGTTAAATCAGAGAACAGCTATGAGGAGATAGGCAGAAGGAACAGCTGGTCATCGAACCCCATGCTGCCTGCAGTAACCAAAGGTTCTCCCATGGAGCACCAACACAGCACCAGAGTCACAGAGCCTCCGCCGAGAATTGTGCAAGACCCATACCAAGCATTAGGTCCCATCAGCAGTCGTCTAGCCAACCCAGAAGGCCAAGCCCTCCACTCCAAGAAACGAACAGGCAAACACAGTTCATACAGGCTGCCTGACCCCAGCGCTCACAGGcctgtggGCTCTGGACAGATCCAGCTGTGGCAGTTCCTGCTGGAGTTGCTGTCGGACAGCAACAACTCCAGCATCATCACCTGGGAGGGCAACAATGGCGAGTTCAAGATGACTGACCCAGACGAGGTGGCCAAGCGTTGGGGCGAGCGCAAGAGCAAACCCAACATGAACTATGACAAGCTGAGCCGCGCCCTGCGCTACTATTACGACAAGAACATCATGACCAAGGTGCACGGCAAGCGCTACGCCTACAAGTTTGACTTCCAGGGCATCTCACAGGCCCACCAGAGCCACGGCGGAGAAGGGGGCATTGTGAAGTACCAGACTGAGGTATCGTATGCCCAGCCCTACCACAGCCACCAGCCAAAAATTAACTTCATGAACACGCATGCCGCCCCTATGCCCGTGTCACCTGGGAACTTTTTTGGGCCGTCTACAACTTACTGGAACTCAACAACCAGCCCCATGTATCCGGGTTCTCCCATGCCAAGGCACCCAGGGACTCACTCCCACCTGAGCTCATACTATTGAGGTATGGGTGTCTTGCACTAGACTGGATGGCAGAGATTCCTGAAACAGACTGATAAAGATAACATCCACAATGTATCTGGTCTTTAACATCGAAGTTACATTGTAACGCTATGCGAGTTGTTAGTACAGAATGTAAAATGGACAATAACGCTCACGTCACATCTTCAAGCAGAGGCACCATAAGATAGGCAAAAGGAAGAGGGTAAACAATGATGacgagtagagaccaagggataGCCATGAAGGTTCTGCCTTTTTGAATTTCTCAACTATGGAAGCTGAGAATTTGTTCATATTATAGCCTGTGATTCAGTTGTTTGAAAACCATGTTTTTCAATTAGGTAAGTATTTTGTTTAAAAATGTCATTGAGGTCATTGAAGGACTTTAAGGGGAAAGTCACTGAGTGTGGGAAGTGCTAAAACTGTTATGAGGTCTTGATCGCAATTACTATATTCATCGatctaacatttgtaaaagtATCATTGTACAGAATGTGTCATACAATTGTAGCAATAAAACATTTACCCCTGTAGTAATGCTAATAAAAGGAACTTGTATATTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU274764 lncRNA downstream 1938 26605779 ~ 26606214 (-) True G240432
TU274763 lncRNA downstream 2437 26605207 ~ 26605715 (-) True G240431
TU274743 lncRNA downstream 34369 26573004 ~ 26573783 (-) True G240412
TU274714 lncRNA downstream 40181 26567694 ~ 26567971 (-) True G240383
TU274734 lncRNA downstream 67012 26539544 ~ 26541140 (-) True G240403
TU274780 lncRNA upstream 6479 26628274 ~ 26630084 (-) False G240445
TU274783 lncRNA upstream 6522 26628317 ~ 26630084 (-) True G240445
TU274789 lncRNA upstream 16367 26638162 ~ 26638375 (-) True G240450
TU274772 lncRNA upstream 37276 26659071 ~ 26659348 (-) True G240438
TU274796 lncRNA upstream 41200 26662995 ~ 26664067 (-) True G240456
XM_021594711.2 mRNA downstream 40522 26548090 ~ 26567630 (-) True dhx16
XM_021594715.2 mRNA downstream 40780 26548090 ~ 26567372 (-) False dhx16
XM_021594706.2 mRNA downstream 40781 26548090 ~ 26567371 (-) False dhx16
XM_021594722.2 mRNA downstream 60311 26541714 ~ 26547841 (-) True LOC110516135
XM_021594697.2 mRNA downstream 71511 26533644 ~ 26536641 (-) False mgat1a
XM_021584202.2 mRNA upstream 14932 26636727 ~ 26637149 (-) True LOC110505173
XM_021594792.2 mRNA upstream 25230 26647025 ~ 26649990 (-) True LOC110516273
XM_021594796.2 mRNA upstream 69943 26691738 ~ 26715464 (-) False LOC110516285
XM_021594801.2 mRNA upstream 69943 26691738 ~ 26715464 (-) True LOC110516285
XM_021584224.2 mRNA upstream 107279 26729074 ~ 26736469 (-) True LOC110505184
TU274740 other downstream 38630 26569101 ~ 26569522 (-) True G240409
TU273578 other downstream 783395 25823356 ~ 25824757 (-) True LOC110515750
TU272614 other downstream 1371785 25199088 ~ 25236367 (-) True LOC110515384
TU272446 other downstream 1641944 24936516 ~ 24966208 (-) False LOC110515208
TU274804 other upstream 52797 26674592 ~ 26675033 (-) True G240464
TU275014 other upstream 449260 27071055 ~ 27075883 (-) False LOC110516631
TU275018 other upstream 456244 27078039 ~ 27079944 (-) False LOC110516631
TU275019 other upstream 462545 27084340 ~ 27085060 (-) True LOC110516631
TU274911 other upstream 490387 27112182 ~ 27112622 (-) True LOC110516667

Expression Profile