RNA id: XM_021594756.2


Basic Information

Item Value
RNA id XM_021594756.2
length 1984
RNA type mRNA
GC content 0.54
exon number 10
gene id LOC110516190
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26608152 ~ 26621798 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAACGATACGCAGCCACCCACTGAGTTGTTTAGCACGTCTCTGAGTGAGAGAGGCAAAGCGGTGATGCGAGGTCCCCACTCTTTCCTTCTTGTACAAAATTTCCTCTTCCTTCCCGTTCGTGGTTGTATGTCGGCTCTTTAATAACACAAGTAACCACTACATCTTTGCACACCGATAAAAACGAAATGGTGTCCAGCACTGCACGCGTAAAAAGGGGCGCGCAAAACTCGCTATTTTAATTGTTTCGTTTAATCAAGTTTAATGCAGACGTTCCTGGGTTAAAAGCACATATGCTAGTTTAGAGAAAGTTCAAGGTGATTTAAAAAGAAGTGATGTACCTGTCCCAATTGATGATAAAGACGACACCTTTGAGGCACATTACACAGCATACAAGCAATCTTGATTAGTACAAGTTTATAGGAGCGCGCTCGTGGCAGGTGTCTTGGCGCCATGGAACGTATTTGGAGTAGAAGGCTACTTTCCATAGAGTTGGAGGATCGAAATCAATGAGATGACTGGAAGCACTGTCCGTGGTGAGCGAGGACCAGTCCATTTTCGAGTCGCCCTTCCCTGCCGCCACGACCATGCACATGAAGGGCGAGATGACGTCACCGGGAAGCTTCAGCCAGGCCTCCGAAGAGAGCCAAGAACCCACCGAGCCGGAGTGGGCCGGGCCGGGAGCACAGAACCCTGGGAAAAGAGGAGAGCACATCAACGGAACCAGTCGTGAGTCCCCTGTGGACTGCAGTGTGACCAAACGCTCCAGACACATGAGCAGCAACGAAGGGGGTCAGCTGGCCTACCAGGCCTCATACCCTGAGCCCCGCGCCAGCCCCCAGACCGCCACCACGCCCAACAGCgccacagaggagaagagagtcaTAGTGCCCGCAGACCCTGAGGTGTGGACCCAGGACCATGTGCGCCAGTGGCTGGACTGGGCCATCAAGGAGTACAGCCTGGAAGAGGTGGACATCATGCACTTCCACACACTGGAGGGCAAGGCCCTCTGCAAGATGACCAAGGAGGATATGATGCGCCTCACGTCCGCCTACAACACTGACATCCTGCTCGGCCACCTCAATTACCTCCGACAGAGCAGCCCTACTTTCTCCTACCCCACAACTCCAACCAACAACACACAGCAACAACCCAGACTACAGGTTAAATCAGAGAACAGCTATGAGGAGATAGGCAGAAGGAACAGCTGGTCATCGAACCCCATGCTGCCTGCAGTAACCAAAGGTTCTCCCATGGAGCACCAACACAGCACCAGAGTCACAGAGCCTCCGCCGAGAATTGTGCAAGACCCATACCAAGCATTAGGTCCCATCAGCAGTCGTCTAGCCAACCCAGAAGGCCAAGCCCTCCACTCCAAGAAACGAACAGGCAAACACAGTTCATACAGGCTGCCTGACCCCAGCGCTCACAGGcctgtggGCTCTGGACAGATCCAGCTGTGGCAGTTCCTGCTGGAGTTGCTGTCGGACAGCAACAACTCCAGCATCATCACCTGGGAGGGCAACAATGGCGAGTTCAAGATGACTGACCCAGACGAGGTGGCCAAGCGTTGGGGCGAGCGCAAGAGCAAACCCAACATGAACTATGACAAGCTGAGCCGCGCCCTGCGCTACTATTACGACAAGAACATCATGACCAAGGTGCACGGCAAGCGCTACGCCTACAAGTTTGACTTCCAGGGCATCTCACAGGCCCACCAGAGCCACGGCGGAGAAGGGGGCATTGTGAAGTACCAGACTGAGGTATCGTATGCCCAGCCCTACCACAGCCACCAGCCAAAAATTAACTTCATGAACACGCATGCCGCCCCTATGCCCGTGTCACCTGGGAACTTTTTTGGGCCGTCTACAACTTACTGGAACTCAACAACCAGCCCCATGTATCCGGGTTCTCCCATGCCAAGGCACCCAGGGACTCACTCCCACCTGAGCTCATACTATTGAGGTATGGGTGTCTTGCAC

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09436 FLI1; friend leukemia integration 1 transcription factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU274764 lncRNA downstream 2485 26605779 ~ 26606214 (-) True G240432
TU274763 lncRNA downstream 2984 26605207 ~ 26605715 (-) True G240431
TU274743 lncRNA downstream 34916 26573004 ~ 26573783 (-) True G240412
TU274714 lncRNA downstream 40728 26567694 ~ 26567971 (-) True G240383
TU274734 lncRNA downstream 67559 26539544 ~ 26541140 (-) True G240403
TU274780 lncRNA upstream 6745 26628274 ~ 26630084 (-) False G240445
TU274783 lncRNA upstream 6788 26628317 ~ 26630084 (-) True G240445
TU274789 lncRNA upstream 16633 26638162 ~ 26638375 (-) True G240450
TU274772 lncRNA upstream 37542 26659071 ~ 26659348 (-) True G240438
TU274796 lncRNA upstream 41466 26662995 ~ 26664067 (-) True G240456
XM_021594711.2 mRNA downstream 41069 26548090 ~ 26567630 (-) True dhx16
XM_021594715.2 mRNA downstream 41327 26548090 ~ 26567372 (-) False dhx16
XM_021594706.2 mRNA downstream 41328 26548090 ~ 26567371 (-) False dhx16
XM_021594722.2 mRNA downstream 60858 26541714 ~ 26547841 (-) True LOC110516135
XM_021594697.2 mRNA downstream 72058 26533644 ~ 26536641 (-) False mgat1a
XM_021584202.2 mRNA upstream 15198 26636727 ~ 26637149 (-) True LOC110505173
XM_021594792.2 mRNA upstream 25496 26647025 ~ 26649990 (-) True LOC110516273
XM_021594796.2 mRNA upstream 70209 26691738 ~ 26715464 (-) False LOC110516285
XM_021594801.2 mRNA upstream 70209 26691738 ~ 26715464 (-) True LOC110516285
XM_021584224.2 mRNA upstream 107545 26729074 ~ 26736469 (-) True LOC110505184
TU274740 other downstream 39177 26569101 ~ 26569522 (-) True G240409
TU273578 other downstream 783942 25823356 ~ 25824757 (-) True LOC110515750
TU272614 other downstream 1372332 25199088 ~ 25236367 (-) True LOC110515384
TU272443 other downstream 1656517 24936667 ~ 24952182 (-) False LOC110515208
TU274804 other upstream 53063 26674592 ~ 26675033 (-) True G240464
TU275014 other upstream 449526 27071055 ~ 27075883 (-) False LOC110516631
TU275018 other upstream 456510 27078039 ~ 27079944 (-) False LOC110516631
TU275019 other upstream 462811 27084340 ~ 27085060 (-) True LOC110516631
TU274911 other upstream 490653 27112182 ~ 27112622 (-) True LOC110516667

Expression Profile