RNA id: XM_021584202.2


Basic Information

Item Value
RNA id XM_021584202.2
length 423
RNA type mRNA
GC content 0.52
exon number 1
gene id LOC110505173
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26636727 ~ 26637149 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCTGCACTTAAACGGCACAGAGCTGCAGACTCTCCTGCTATCCTTCCTACAGCAATGTCTGAATGGCACAGGTTTACCGATCCTAGTACTCTCTCAGAACTACACTACCCAGCAGGCCATTCTCCCAGTGGGCGGAGCTATGCCTAAGGCTCAAACTCAGGGATTTGTGTACATTCTACTGATGGTAGGTATGTTTAGTTTCTTCACGTTTGGTATCATGCTGAGCTACATCCGCTCCAAGAAGCTAGAGAGCTCCCACAATCCGTATCACCAGTACATTGCCCACGACTGGACCAAAGGACTCACCCTCCCACGGGCCGTTACACAGGCACTGCACGGGGCAGACACACGTATTGGAGACAACGGGAAGAACCCCATGGTCATCTTCAACCCTGCTGCATTGGAGCAGCTCCCAGGATAG

Function

GO: NA

KEGG:

id description
K04894 KCNE1; potassium voltage-gated channel Isk-related subfamily E member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU274780 lncRNA downstream 6643 26628274 ~ 26630084 (-) False G240445
TU274783 lncRNA downstream 6643 26628317 ~ 26630084 (-) True G240445
TU274764 lncRNA downstream 30513 26605779 ~ 26606214 (-) True G240432
TU274763 lncRNA downstream 31012 26605207 ~ 26605715 (-) True G240431
TU274743 lncRNA downstream 62944 26573004 ~ 26573783 (-) True G240412
TU274789 lncRNA upstream 1013 26638162 ~ 26638375 (-) True G240450
TU274772 lncRNA upstream 21922 26659071 ~ 26659348 (-) True G240438
TU274796 lncRNA upstream 25846 26662995 ~ 26664067 (-) True G240456
TU274798 lncRNA upstream 29910 26667059 ~ 26667329 (-) True G240458
TU274803 lncRNA upstream 33479 26670628 ~ 26670901 (-) True G240463
XM_021594761.2 mRNA downstream 14929 26608152 ~ 26621798 (-) False LOC110516190
XM_021594751.2 mRNA downstream 14932 26608152 ~ 26621795 (-) False LOC110516190
XM_021594756.2 mRNA downstream 15198 26608699 ~ 26621529 (-) True LOC110516190
XM_021594711.2 mRNA downstream 69097 26548090 ~ 26567630 (-) True dhx16
XM_021594715.2 mRNA downstream 69355 26548090 ~ 26567372 (-) False dhx16
XM_021594792.2 mRNA upstream 9876 26647025 ~ 26649990 (-) True LOC110516273
XM_021594796.2 mRNA upstream 54589 26691738 ~ 26715464 (-) False LOC110516285
XM_021594801.2 mRNA upstream 54589 26691738 ~ 26715464 (-) True LOC110516285
XM_021584224.2 mRNA upstream 91925 26729074 ~ 26736469 (-) True LOC110505184
XM_021594818.2 mRNA upstream 175317 26812466 ~ 26817929 (-) True LOC110516341
TU274740 other downstream 67205 26569101 ~ 26569522 (-) True G240409
TU273578 other downstream 811970 25823356 ~ 25824757 (-) True LOC110515750
TU272614 other downstream 1400360 25199088 ~ 25236367 (-) True LOC110515384
TU272443 other downstream 1684545 24936667 ~ 24952182 (-) False LOC110515208
TU274804 other upstream 37443 26674592 ~ 26675033 (-) True G240464
TU275014 other upstream 433906 27071055 ~ 27075883 (-) False LOC110516631
TU275018 other upstream 440890 27078039 ~ 27079944 (-) False LOC110516631
TU275019 other upstream 447191 27084340 ~ 27085060 (-) True LOC110516631
TU274911 other upstream 475033 27112182 ~ 27112622 (-) True LOC110516667

Expression Profile