RNA id: XM_021594792.2


Basic Information

Item Value
RNA id XM_021594792.2
length 1412
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC110516273
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26647025 ~ 26649990 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGTGCGCTAAAACTGTTGGACATTCAAGACAGGCATGAATTCACACGGTCTAAAAATAGCATTGTAAATACAAACTCATACTGTGTAGACTAGAGTGTAGGCTGAAAACTGCATCGATAGCTTCTGTATGTATTTTTATTATTTGGGTAGTTTGAAGCAAATGAATAGGTAATGGACACCGATTAATTGATAGAGATCATACGTAAACTTCATTCCGTTTTTATCTGAACAGTTATCAATTGGAAATGTCAAACCAACTCTGATTAGGCAGAGATCAGAACTTGCCAGAAGAAGGTCGAAAAAGTCTTGATTAACAATGGCGAAGTTAACAACATAGCAACCTATTGGAAATTAGTTCACTCCGTTTCATGTCAGAAGAAACTCGTGGGGAGTAAagcaagaaaataaaaaaaggtgcATTTTGTTCTATTAATTTGCTGGAAAGAGTTCTAGAAGAAAAATGATAAAGCAGTTATAGACactcctggtctttgtgCTCCTCTTACTCTGCCTCTGGCACCATGATCCCCTGGTTACCCGAGTGCTACATTGTCATGGGGGCTATGCCGAGGTGGACTCCATGACAGAGGCGGTGGCCGGGGAGAGCTTCCTCATGGACTTCATCTCctgtaagaggagagaggaggtccAGGCCCATACCACGGTTGACTGGCACTTCAGAGccacaggagaggaggagtacaTCCGCATAAAGATCATGATGTACGTGCTGATCGTGGTGCTGCAGCTGTGGATGTTTGTGGTGCTGATCCACTGCTACAACAAGATCTGGGCTGAACACGAGGCGTGGGACGCCCGCAAAACCTTGAGGGCCCAAGAACTGGCCCTAATAAACGAACCTTTAGACTCAAAGGACAATTGTGATGGAGTGCTTCTGGAGTGACTTGTTACGGTAAACATCAAAGGTGGAGAACTCTGTCACAAGCAATTGTTACCACTACACTAGTAGGCTATTACATCATAGAAACATCATTTGAATGTCTTAGCATAGTGTGTAACACATGTGGTTTACAATGTACTTAATTTGCTGTACGAGGTAGTTGCAGCTGGCATGAGTGGTGATTAGATTGACAGGTGGTGCCGAACAGCCTTAGTGTGTCAACTCAACAGAGAATGTCATCACGTGATGGATCAACAGTTCTGACAAAGCTCTGATTACAGATGGTTCCACCTAAGCTACATAGAACGCTTTGGCAGGAACAACCATGCATCTACATAGATAGATCTCATCTACGACCATGTTGTTAAAGTTTATTAGAATCGCTTTGGTGCTATTTTCACAACTCTTAATCCAAAACTCCAAGCTGGTCACACTTATAATGCAGCAAGTCTTTCATTCAAAACCTGTCATTATGCATTCATTTGGATTATAAACATATCTCACCACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU274789 lncRNA downstream 8650 26638162 ~ 26638375 (-) True G240450
TU274780 lncRNA downstream 16941 26628274 ~ 26630084 (-) False G240445
TU274783 lncRNA downstream 16941 26628317 ~ 26630084 (-) True G240445
TU274764 lncRNA downstream 40811 26605779 ~ 26606214 (-) True G240432
TU274763 lncRNA downstream 41310 26605207 ~ 26605715 (-) True G240431
TU274772 lncRNA upstream 9081 26659071 ~ 26659348 (-) True G240438
TU274796 lncRNA upstream 13005 26662995 ~ 26664067 (-) True G240456
TU274798 lncRNA upstream 17069 26667059 ~ 26667329 (-) True G240458
TU274803 lncRNA upstream 20638 26670628 ~ 26670901 (-) True G240463
TU274815 lncRNA upstream 49291 26699281 ~ 26699605 (-) True G240472
XM_021584202.2 mRNA downstream 9876 26636727 ~ 26637149 (-) True LOC110505173
XM_021594761.2 mRNA downstream 25227 26608152 ~ 26621798 (-) False LOC110516190
XM_021594751.2 mRNA downstream 25230 26608152 ~ 26621795 (-) False LOC110516190
XM_021594756.2 mRNA downstream 25496 26608699 ~ 26621529 (-) True LOC110516190
XM_021594711.2 mRNA downstream 79395 26548090 ~ 26567630 (-) True dhx16
XM_021594796.2 mRNA upstream 41748 26691738 ~ 26715464 (-) False LOC110516285
XM_021594801.2 mRNA upstream 41748 26691738 ~ 26715464 (-) True LOC110516285
XM_021584224.2 mRNA upstream 79084 26729074 ~ 26736469 (-) True LOC110505184
XM_021594818.2 mRNA upstream 162476 26812466 ~ 26817929 (-) True LOC110516341
XM_021594832.2 mRNA upstream 181186 26831176 ~ 26851721 (-) False LOC110516351
TU274740 other downstream 77503 26569101 ~ 26569522 (-) True G240409
TU273578 other downstream 822268 25823356 ~ 25824757 (-) True LOC110515750
TU272614 other downstream 1410658 25199088 ~ 25236367 (-) True LOC110515384
TU272443 other downstream 1694843 24936667 ~ 24952182 (-) False LOC110515208
TU274804 other upstream 24602 26674592 ~ 26675033 (-) True G240464
TU275014 other upstream 421065 27071055 ~ 27075883 (-) False LOC110516631
TU275018 other upstream 428049 27078039 ~ 27079944 (-) False LOC110516631
TU275019 other upstream 434350 27084340 ~ 27085060 (-) True LOC110516631
TU274911 other upstream 462192 27112182 ~ 27112622 (-) True LOC110516667

Expression Profile