RNA id: XM_021594801.2


Basic Information

Item Value
RNA id XM_021594801.2
length 4303
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC110516285
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26691738 ~ 26715464 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATAGCCTAGATAGCCTTCCGAAGACCTTGTCATTTCGCAGGCTCATCCGTTTTTTCCCTTCGGCGCTCTGGTCACCTATTCAATATCAAATTATGTTGAAAAATAGCCGGTTCGTATGCCTACTGTGGATATTATTTGAAAGTGCCTAGAATGAGAATCTTCGCGTATTTTTGCTGAACTGTGCCACGCTTCCCGCGCAGCGGCAGGTTTCTCTCAAACGCACCGAATTGCCTGGAAGGCAACAGTCGACACAAAACCTTGGAGTAGACGCAATGGAGAATTTAATCTAAAGAGGAACACATGGGGAAAGACACAAAGGAATAAGAGGGACCATACGTAAGGACAGATATTGCTCATAAACGCAGCATATCTTTTTCAAATGTGAAGTGGCCAGATGTGGAGAAAATCACGAATTTAATTCGGTTTTTAATTAGgcatttttatttattaattcGGTGGGTTTGTATAGTCATATCCAATAATATATCGGAATGTAGCTTAGTATGGTATCTATACGACCACTGCTATAATAAGAAATGGTGCAAAGTTAGATCGGTCAATAGGCCTGCTGTAAAGTTATTTCTACATGCCTTAATGGCCACAATCACTCTTAATTGTTGTCTATGGAATGACCTGTTATCCTGACCTGTAGGGACCAGTGTTaccaacaacaaaacaataataataaaaacatgcACCGGTTTATTGGTATGAAcaagaacaaaaatgtaaatgtaagtaGGCAGACTGCAAGTACTCTGGATAAgcgcatctgctaaatgactcaaatataaATGTAAAACATAAATTATCATAAGTGTTGTGGAAGGATTTGTTGATGGACCTGcatatttattttttgcaaatataacacttttttaCATTGAATAGTGCATTACATCACCCAAACTCATTACACAATTATCTGTCTTCCAGGATATGCACAAATTCCATCAGACACACTAATGTTGTTTTCTACTTTCTGAGCCTAAACTCAACATGCCTTCCTGAAAAATCTCATCGCAAAGAATCACTGATCATATCAGCTGCTAGTCCATTTACCACATGTTGCTTTTTTCTGTGTGCACCCAGTCACATTGCCAACCAATCAATGCGTCCAGATTATAAATAGTTGAACAAAAGCTTTAAATGAACAACCAGGTTTACTGAAACCTGAGGCGCAGTGCATTATTTCTTCATCATTGGTAACTAAATACGGGGGTGTGGAGACTGTGGACTCTGTACAGGCTGCACAGGCACGAGTCTGATTTAGTACGGAGGCCGGTGAGGTAAGGAGGAGGCTGTATATTCCTAACACTAACGGGGCACTGACAAGGACGCAGCCTAGAGCTGACCTCCTCCTCACCTGgccaccccccctcctccccacacAGAGGGATGCCCCCCAGGCCGAGCAGCAGCTGAAGAGGAGGACAAAAAGGTTACTCTGACTGCGCCTCACCAGAAgaggtcctcctctcctctctcagactgGTTGGGACGCTCCAGTTGAGTTTTCTTTGACTCATCCTCACCGGAGTGAGAGAGTGAAGACCTTTTGAAGATCCAGAGGTTCTTACTGTGGGATCACATTTATTTGGAGTAGCTGATAATAGACGCAGACCTACAGTCTTGCTTTGTCTTTCCCTgtctgtggggtgtgtgtgtgagagagtgcttgTGGGTTGGCACCGGTGAGAGCGTCTCCCTTCCCAAAGCCAGGATGTCTGCAGTTCAGCTGCTGCTGGTCCCGCTGGCGCTGTGGGCTCTGCAAGcgTCTCTATGCCATGGAGCCTGTGTGGAGGTGGACTCTGACACTGACGCAGTGGTCAGCGAAGGCTTTAAGCTGGGCTGCATCTCCTGTAAGATGAGGGGCGAGGTGCCCGCCGAGGCCACTGTTGAATGGTCCTTCATGCCCAAAGGGGAGAGCGAGTTCACAAAAATCTACAGCTACGAGGATCTAATGAGCGACATCCCGGACGAGCGCTTCTATGAGCGTCTGGACTGGAACGGCAGCAAGAAGACCAAGGACCTGCAGGACGGCTCCATCTACATCCTGAACGTGACGTGGAACGACACGGGCACCTACCGCTGCATCTTCAACCGCACCCTCACCTTCACCTCCTACGGGTTCCACACTGACGTCACCAAGATCGTCCACCTCAACGTGGTGCCAAGACTGACCAGGGGGATAGCGTCCATCTTGTCTGAGGTGATGATGTATGTCACCATCGTTGGGCTGCAGGTATGGCTGGTGGTGGAGATGATTTACTGCTACAGGAAGATATCAGCGCAAGGCGAGGAAGCATTGAGAGAGAGCGCgtTAAATAATGGCTCCAGACGATGAATAGCTCTCGATAGCCCTTCAACACTTCACCCCTTCTTCCAGACTTCCATTATGACACCATCTCATTACCCCATCCAGGAGGAGCAGCCAAGAGGCTTGTCCAGAGAACAGATGGATGAGAAGTGAAACAGCCAATGGAAAAAAAGGGACATTACTTTATTTAAATGCAAATATACAGCATGTGTACTATCGAGCAGTACTATAATATCAAAGAGAGTTGTATATACAGTACGTATGCTTAATTATGCAATCCAAATCTTCATTGTAACACTCCTACATTATATTAAGTTAGTTCATACATAGTAGTGATACATCATAaccattggcattaatatgtttCTAAAGGTACATTTCAGGATTCTAAATTGTGATTGTATCAAAGCAATTAGAGATCAGAACTCAACTGCAATCTTACTTGGCTTCAGTAGCCGGTCTTGATCAGACCTTCAATGGCTATTATGCGCAGATCCAGACTAGCCTACCGGTATATTCAAAAGCATCCCAGTAAAACCTTAAGAAAGTTATGCATTCAGGTTAATGAAATGAGTACCCCCTGGGGAGTAGTAGCCTAACACACGGTTGACTAGCTGCAAGTAATGGATTGTACACATCCAGAGCAACTATTTCTGTTTGACAACATCTGTCTACCTGTTAAAAGGTTAAAGCATTAATGTTCTAGTAATGTTACCAATAGGATAACTCTCTCAAGCTCAAAAAGTACATTAGGATCAGGGCAAATTCACTATCCAGTGTCTAGTGTAGGACTCATGcctgtacatactgtagatcGAGAAGGACTGTAGCTAACTATTTATCAACGCAATGGAATCATTTTCACATAACCGGTAGGTCTCTGAGATTTCGCGAGAGAAACGGACGGTTGTGATTCCATGGACATTCATTTGGACATCAGCTTGTGAGGGTTGCTTGTGTCAGACGACTTAAGGTAATGAGTAAATTGCTCAAAGCTATAATTATCCACCAATGTATCCTTCTAGAAAGTGTCACATTATAGCAGTGCCATTTTTAAATGTTGAGACTATCATTCTACCGTTGTGACTGGAAACCTCCATACATTATACATATATTTATTGCAGTATAATTGCATTCTCTCCATATTTCATTAATGCTTAATTTGCTAGAATATCCTGACCATATTTACAACAACCAAGGGCATGTGATATTAGCTACCATTTTACTACCGTGGGAAACTACCACAATTTGTCCAGTGTGTCTGGAGCAGGAATGTCTGTGACTGGTCAAAGACCTGAAATGGTTTAAACAAGACGCTAAACTGGTTTAAAACAAGTTATTTAATGAAGATACCTAATGTGAGCAGAAACTATACTATATACATAGTGTTGGCTTAGTGCTCATATCGATCAGTCCCTATGGAGCAGAGTACAGTGAGCTGCTATTGAAAACTGACATCCCTGTCGTTCCTATTTGGCAGTCAATTCTGAATTATACCTCCAGGGGCAGCATAACACTGCCTAATGTGGACTGCCATGTTGCATACATACTTTCTTATAGAATGTCATTGGGATCTGGGTTTGCTACATTTGAAGTACAGAAAAGTGAAAGAATAATAGGATTGTTATCGCATGATAACTGCAACGCGTGAACAAATGATCATTCATTAGAATTAATGTTCAAGATTTAGAATTATTCAaaattcctaaaaaaaaaaaaaaaagtcacgcCGATTTGGTCAGGTTAGAGTTTCTATTCACCTTTCACAGAACTTCAACATTAAATAGCGGAATATATGTTGGAAAAAACAACAGGCTTAAAACAGGGAATAATCTACTTAAATGTTCACTGAAGAGAGCTTTTCCAGTTCACATTACTATGGAAATGTTGCTTGCCAAAACAGTCAGCTTTATACCATAATACAATTGTCATGTGAGAATGGAGTAGGCTTTATGTCTGGTTTATTAAATCAAAACAATCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU274803 lncRNA downstream 20837 26670628 ~ 26670901 (-) True G240463
TU274798 lncRNA downstream 24409 26667059 ~ 26667329 (-) True G240458
TU274796 lncRNA downstream 27671 26662995 ~ 26664067 (-) True G240456
TU274772 lncRNA downstream 32390 26659071 ~ 26659348 (-) True G240438
TU274789 lncRNA downstream 53363 26638162 ~ 26638375 (-) True G240450
TU274842 lncRNA upstream 47249 26762713 ~ 26763620 (-) True G240497
TU274869 lncRNA upstream 69961 26785425 ~ 26828419 (-) True G240519
TU274931 lncRNA upstream 141605 26857069 ~ 26857277 (-) True G240574
TU274936 lncRNA upstream 146298 26861762 ~ 26861967 (-) True G240579
TU274948 lncRNA upstream 158661 26874125 ~ 26874648 (-) True G240588
XM_021594792.2 mRNA downstream 41748 26647025 ~ 26649990 (-) True LOC110516273
XM_021584202.2 mRNA downstream 54589 26636727 ~ 26637149 (-) True LOC110505173
XM_021594761.2 mRNA downstream 69940 26608152 ~ 26621798 (-) False LOC110516190
XM_021594751.2 mRNA downstream 69943 26608152 ~ 26621795 (-) False LOC110516190
XM_021584224.2 mRNA upstream 13610 26729074 ~ 26736469 (-) True LOC110505184
XM_021594818.2 mRNA upstream 97002 26812466 ~ 26817929 (-) True LOC110516341
XM_021594832.2 mRNA upstream 115712 26831176 ~ 26851721 (-) False LOC110516351
XM_021594836.2 mRNA upstream 115712 26831176 ~ 26851721 (-) False LOC110516351
XM_036973677.1 mRNA upstream 115712 26831176 ~ 26851723 (-) False LOC110516351
TU274804 other downstream 16705 26674592 ~ 26675033 (-) True G240464
TU274740 other downstream 122216 26569101 ~ 26569522 (-) True G240409
TU273578 other downstream 866981 25823356 ~ 25824757 (-) True LOC110515750
TU272614 other downstream 1455371 25199088 ~ 25236367 (-) True LOC110515384
TU272445 other downstream 1744733 24937629 ~ 24947005 (-) True LOC110515208
TU275014 other upstream 355591 27071055 ~ 27075883 (-) False LOC110516631
TU275018 other upstream 362575 27078039 ~ 27079944 (-) False LOC110516631
TU275019 other upstream 368876 27084340 ~ 27085060 (-) True LOC110516631
TU274911 other upstream 396718 27112182 ~ 27112622 (-) True LOC110516667
TU275055 other upstream 440104 27155568 ~ 27158664 (-) True LOC110516678

Expression Profile