RNA id: XM_021594818.2


Basic Information

Item Value
RNA id XM_021594818.2
length 1739
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC110516341
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26812466 ~ 26817929 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacagctgtgttATTTTATGTTTACACCtgacacagcaggacagcagccATACCTGAAGTAAACTGACAAGAGATGGCGTATTCCACCAGCACTCTTGCTGCTGGCTGCTTTGGGAAGATCTACAGGGAGAAGTACAATGACACCTGGGCTGCAATCAAGAAGGTGCCACAACACTTAATCAATAGGAGAGACCTGGAGAGAGAGTGTCAAGTATACAATAAGGCAATTCATCCTAACATAGTGAAGCTTCTGGGTAATCCAACACTCAAGGACTCTAAGTGGATCATCCCCATGGAGTTCATCTTTGGAGAAGAACTGGAGACAACCATCTTCAAATCACAAAAATCTCAAATCCAGTTGACTCCATCTATAAAGGCCACCATCATCACAGGCATGTGTGAAGGACTACTTTATCTACACAGCAAAGATATTGTCCATCAGGACCTCAAGCCTGACAACATCATGGTAGAGCATGACACGCACAGAGCTGTGATCATTGATATGGGACTGGCCAAATTCTTCTGCAATGGCCTAAATTCTGCTATGGATACGGGCAACGAGGCCTACTCTCCCCCTGAGGTCCTGCAGAGGCGGGGCCAGCGAGATCAGCGCTCGGACGTGTGGGCTATGGGTAAAATCATTGCCGAACTCTGTGCCAGAGTCAGGCTGCACACCCCCAGCGTCTGTCCAACTAAGATCCAGGAGACCCTCAGTCTCCAAGGCCAGCAGTACTGTAACGCTGTCTGTAGGATGGTGCAGAGAGACCCCACAATGCGAGCCACCATGGCTGGAATCATGCCGGAGATACAAAGGGCAGGGGTAAATGGCGGTGGCGGCAACACTGGGAGGCAGAAAAGAGGACATCTTCTGACACCCTTTCCTCACACTCAGGTAAAAAATGCATTGCCACGTCCTCAAGCTCCTGTACAGCGTTCACCATCTCCATCGAGATTTGAGCGCAGTGCTTTACCAATGCCTGAGGTCAAGACAGTAGTGCCAGCTCCTGTGCAAGCGCCTTCTCCATCGAGATGGGAGCATACAGCCTTGCCAAAGACTGAGTTGAAGTTTGAGGTCAAGACAACACTGAGACCACAACCCGCACAGCAGTCACTTTCCCTATCAAGATGGGAGCGGGCAGCCTTGCCAAAGACTGAGGTCAAGAACTCACCATCTCCCCTTTCAAAGGTAGACAAGGGTAATGCTCTGTTTCCATCAGGCACAACTCAACCCAGTCAAGATGTCATGAAACAGCTTCTCTACAAAGAGGCGTCGAGGGGTCTCCCATGCCCACTCCCCACGACAGGCAAGGTGCGAATCCGCCGTTATGAGCAAAGGAATGGGGAAGTGGAGACTTGGGAGCAAAAGGAGGTAGAGACTGAAGGAGGGAGGATAGTCAAGTTTGAGGATGTGATGTTTAACAACAAGTCATAAGAAGGTTATTGAAAGATTGTGAAGTAGTTGGGAGTTGATTTGACTGTGCTTCTTCAGAGTGCGGGCCACTCCCCTTCCGTCCTTCAATGTAAAAGTCTGACATGTTTCTGAAAAAGGTGAAAGACTGTATTTGGGACAGGGGATAAACTAATGGAATAATTCTAATGTCCAGTGAAACTATACTATGTAACAATACATTTACACATTTTCTTACTACGGTAGGCtaaatgtgtatatactgtatgaatataaatatatatctcAACAACAATAAAAGTTGTATTGCACTGTTAAGAAGGAAACCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU274842 lncRNA downstream 48846 26762713 ~ 26763620 (-) True G240497
TU274815 lncRNA downstream 112861 26699281 ~ 26699605 (-) True G240472
TU274803 lncRNA downstream 141565 26670628 ~ 26670901 (-) True G240463
TU274798 lncRNA downstream 145137 26667059 ~ 26667329 (-) True G240458
TU274796 lncRNA downstream 148399 26662995 ~ 26664067 (-) True G240456
TU274931 lncRNA upstream 39140 26857069 ~ 26857277 (-) True G240574
TU274936 lncRNA upstream 43833 26861762 ~ 26861967 (-) True G240579
TU274948 lncRNA upstream 56196 26874125 ~ 26874648 (-) True G240588
TU274950 lncRNA upstream 59307 26877236 ~ 26878016 (-) True G240590
TU274966 lncRNA upstream 71947 26889876 ~ 26891172 (-) False G240601
XM_021584224.2 mRNA downstream 75997 26729074 ~ 26736469 (-) True LOC110505184
XM_021594796.2 mRNA downstream 97002 26691738 ~ 26715464 (-) False LOC110516285
XM_021594801.2 mRNA downstream 97002 26691738 ~ 26715464 (-) True LOC110516285
XM_021594792.2 mRNA downstream 162476 26647025 ~ 26649990 (-) True LOC110516273
XM_021584202.2 mRNA downstream 175317 26636727 ~ 26637149 (-) True LOC110505173
XM_021594832.2 mRNA upstream 13247 26831176 ~ 26851721 (-) False LOC110516351
XM_021594836.2 mRNA upstream 13247 26831176 ~ 26851721 (-) False LOC110516351
XM_036973677.1 mRNA upstream 13247 26831176 ~ 26851723 (-) False LOC110516351
XM_036973676.1 mRNA upstream 13247 26831176 ~ 26881008 (-) False LOC110516351
XM_036973675.1 mRNA upstream 13247 26831176 ~ 26881042 (-) True LOC110516351
TU274804 other downstream 137433 26674592 ~ 26675033 (-) True G240464
TU274740 other downstream 242944 26569101 ~ 26569522 (-) True G240409
TU273578 other downstream 987709 25823356 ~ 25824757 (-) True LOC110515750
TU272614 other downstream 1576099 25199088 ~ 25236367 (-) True LOC110515384
TU272445 other downstream 1865461 24937629 ~ 24947005 (-) True LOC110515208
TU275014 other upstream 253126 27071055 ~ 27075883 (-) False LOC110516631
TU275018 other upstream 260110 27078039 ~ 27079944 (-) False LOC110516631
TU275019 other upstream 266411 27084340 ~ 27085060 (-) True LOC110516631
TU274911 other upstream 294253 27112182 ~ 27112622 (-) True LOC110516667
TU275055 other upstream 337639 27155568 ~ 27158664 (-) True LOC110516678

Expression Profile