RNA id: XM_036973676.1


Basic Information

Item Value
RNA id XM_036973676.1
length 2579
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC110516351
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26831176 ~ 26881042 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGTATTGTTTTTTTCTTAACTAGGTAGGCCTTCCGACATTTTGTCTCACGGCGTAGGTATGCGAGTAGGAGGCGGACCGGACAGTAAGGCAATTCATCCTAACATAGTGAAGCTTCTGGGTAATCCAACACTCAAGGACTCTAAGTGGATCATCCCCATGGAGTTCATCTTTGGAGAAGAACTGGAGACAACCATCTTCAAATCACAAAAATCTCAAATACAGTTAACTCCATCTGTAAAGGCCACCATCATCACAGGCATGTGTGAAGGACTACTTCACCTACACAGCAAAGATATCGTCCATCAGGACCTCAAGCCTGAGAACATCATGGTAGAGCATGACACTCACAGAGCTGTGATCATTGATATGGGGCTGGCCAAATTCTTCCGCAATGGCCTAAATTCTGCTGTGGATATGGGCAACGAGGCCTACTCTTCCCCTGAGGTCCTGCAGAGGCGGGGCCAACGAGACCAGCGTTCAGACGTGTGGGCTATGGGTAAAATCATTGCTGAACTCTGTGCCAGGGTCAGGCTGCACACCCCTAGTGTCTGTCCGGCTATGATCTATGAGATCCTCAGTCTCCAAGGCCAGCAGTACTGTAATGCTGTCTGTAGGATGGTGCAGAGCGACCCCACAGTGCGAGCCACCATGGCCGGGATCATGCCAGAGATGCGAAGGGCAGGGGGAGGTGGCAACACCGGGGAGCAACAAAGAGGACATCTTCTGACACCCTTTCCTCACACTGAGGTAAAAGACACATCGCCACGTCCTCATGCTCCCCCGCTATCAAGAGCTGAGTGCACAGCCTTGCCAAAGATTGAGGTCAAGACGACACTGCAACCACAACCCATACAGCGGTCACCTTCCCCGGCAAGATGGGAGCATGCAGCCTTGCCAATGACTGAGGTCAAGATGACACTGCAACCACAACCCGTACAGTGGTCACCTTCCCCGGCAAGATGGGAGCATGCAGCCTTGCCAATGACTGAGGTCAAGACGACACTGCAACCACAACCCATACAGCGGTCACCTTCCCCGGCAAGATGGGAGAATGCAGCCTTGCCAATGACTGAGGTCAAGACGACACTGCAACCACAACTCGTACAGCGGTCACCTTCCCCGGCAAGATGGGAGCATGCAGCCTTGCCAATGACTGAGGTCAAGACGACACTGCAACCACAACCCGTACAGCGGTCACCTTCCCCGGCAAGATGGGAGCATGCAGCCTCTCCAAAGCCTGAAGTCAAGAACTCACCATCTCCCCTTCCaaaggtagaccagggtaatgcACTGGTGGTTCCATCAGGCATGGTTCAACCCAGTCAAGATGTCATGAAACAACTTCTCTTCAAAGAGGCCCCAAAGGGTCTCCCATGCCCACTCCCTACGACGGGCATGGTGCGAATCCGCCGCTATGAGCAAAGGAATGGGGAAGTGGAGACTTGGGAGCAAAATGAGGTAGAGACTGAAGGAGGGAGGATAGTCAAGTTTGAGAATGTGATGTTTAACAACAAGTCATAAGTAGGTTATTGAGAGGTTGTGAAATAGTTGGGAATTGATTTGACTCTGCTTCTGAAATAGTTGGGAGTTGATTTGACTCTGGTCACTCTCCTTCCATCCTTCATTGTAAAAGTCTGACATGTttatggagagggggaagagtatATTTGGGAGGTGGGATAAACTAATGGAAGAATTCTAATGTCCAGTGAAACTATACCGGACGTACTTGTGCCTAAAAACAAAGCGACACAATATCCCACTACGTGagaccaaaatatatatatatatattaacaacAAAAGTTGTCTTGCACTGGTAAGAAGGAAACCTTGGAGTGTGTTAAGGTTGAGTAAGGATTTAGGGATGATCTTGAAAGTACTATCACTTCTTCTAATGCTACATCATGTTACAATGTTGCTCATCTGGATAGGTGACAGTGTATAGAGGCACCTGGAATCAAGTAACTATCTTTGAATGGTTTTGAAACCTTTTTGTTTTGGGAAACTTATCCCTGTTTGCTAATCAGTTGTCTCTTTAGCTCTATATCATACATTTGActgtgtacatacagtaccagtcaaaagttttgggcacacctactcattccagggttttccttCATTTGTCCTAATTTcgacatcgtagaataatagtgaagacatcaacactatgaaataacacatggaattatgtaggaaccaaaaaagtgttaaacaaatccaaatatattttagatttaagattcttcaaagtagccacccttagcctttgacagctttgcacactcttggcattctctcaaccagcttcacctggaatgaacaaattaatgtttttccaacagtcttgaacgagttcccatatatgctgagcacttgttgtttgattttccttcactctgcagtccaactcaatCCAAACCTTCTTAATTGGGTTGAGCTTGGGtgcttgtggaggccaggtcatctgatgcagcattgctctccttcttggtcaaatagcccttacacagcctggaggtgtgttgtatcattgtcctgttggaaaaacaaatgatagacccattaagcgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU274869 lncRNA downstream 2757 26785425 ~ 26828419 (-) True G240519
TU274842 lncRNA downstream 67556 26762713 ~ 26763620 (-) True G240497
TU274815 lncRNA downstream 131571 26699281 ~ 26699605 (-) True G240472
TU274803 lncRNA downstream 160275 26670628 ~ 26670901 (-) True G240463
TU274798 lncRNA downstream 163847 26667059 ~ 26667329 (-) True G240458
TU274966 lncRNA upstream 8868 26889876 ~ 26891172 (-) False G240601
TU274967 lncRNA upstream 8868 26889876 ~ 26890355 (-) True G240601
TU274902 lncRNA upstream 24109 26905117 ~ 26906092 (-) True G240546
TU274900 lncRNA upstream 30476 26911484 ~ 26965713 (-) False G240545
TU274901 lncRNA upstream 30476 26911484 ~ 26914931 (-) True G240545
XM_021594818.2 mRNA downstream 13247 26812466 ~ 26817929 (-) True LOC110516341
XM_021584224.2 mRNA downstream 94707 26729074 ~ 26736469 (-) True LOC110505184
XM_021594796.2 mRNA downstream 115712 26691738 ~ 26715464 (-) False LOC110516285
XM_021594801.2 mRNA downstream 115712 26691738 ~ 26715464 (-) True LOC110516285
XM_021594792.2 mRNA downstream 181186 26647025 ~ 26649990 (-) True LOC110516273
XR_005042247.1 mRNA upstream 52370 26933378 ~ 26939411 (-) False LOC110516494
XR_005042248.1 mRNA upstream 52370 26933378 ~ 26939411 (-) False LOC110516494
XM_021594926.2 mRNA upstream 52370 26933378 ~ 26939575 (-) False LOC110516494
XM_021594930.2 mRNA upstream 52370 26933378 ~ 26939575 (-) False LOC110516494
XR_005042249.1 mRNA upstream 52370 26933378 ~ 26939575 (-) True LOC110516494
TU274804 other downstream 156143 26674592 ~ 26675033 (-) True G240464
TU274740 other downstream 261654 26569101 ~ 26569522 (-) True G240409
TU273578 other downstream 1006419 25823356 ~ 25824757 (-) True LOC110515750
TU272614 other downstream 1594809 25199088 ~ 25236367 (-) True LOC110515384
TU272445 other downstream 1884171 24937629 ~ 24947005 (-) True LOC110515208
TU275014 other upstream 190047 27071055 ~ 27075883 (-) False LOC110516631
TU275018 other upstream 197031 27078039 ~ 27079944 (-) False LOC110516631
TU275019 other upstream 203332 27084340 ~ 27085060 (-) True LOC110516631
TU274911 other upstream 231174 27112182 ~ 27112622 (-) True LOC110516667
TU275055 other upstream 274560 27155568 ~ 27158664 (-) True LOC110516678

Expression Profile