RNA id: XM_021594869.2


Basic Information

Item Value
RNA id XM_021594869.2
length 2274
RNA type mRNA
GC content 0.56
exon number 12
gene id LOC110516373
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26896609 ~ 26914563 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGCGAGAGGTCTCTTCATGGCAGCGCGAGTGGTGGCGTGACGGTTAGCTTATAGTAGTACGTGTGCTTGTTGTTGGGGACAGGCTTGTTGGGGCTGAGGCTAGAAGcccaagagagggagagaaacgccTGTGACACTCACCTGACTGCACAGAATCCATAGAACCCGGCAGACAGGATTTTACAACCTGCGGAGACGCACAAGGGAACCACACGCCCGGGGAGAACGTAGAACCGACAGAACCGAGGGGAGGAACCGAGAGGGAGCCGGAGCCTGGTGCTGAAGCTGGTATGAGagaagTTAAGGGAGAGGGCTGTTGAGGTGTCTGGGTGTGATTGGGCACCCTCTAGTgaacattactactactactactgcgaCCACCAAGCTGAGGAATCAGATATTTTCTGTCTTGGCTACTTTTCGCCCATTGAGCAATTCAAGAGGCCTCCGGTTCAGGGTTAAATAGACACCATGTGGTGTTTGGAGCTGCTTCTGCCGCTGTTGCTAATCATCAAAGaTGTCAGTGGCCAGTGGAACGTATGGATACCCAGGGACATCTCGGCCATGACCAACTCCTGCGTGGTCATCCCCTGCACATTCATGTACCCGTCCGGTATCCGTCTGCACTACGGCATCCACGGAATCTGGTACTTTGGCCAGCCCTACCCCCAGCTCTTCCCACCTGTGGTGTTCAAGACGCGCACAGATATCGTACATGAAAGTTACCAAGGGCGTACCAAGCTCATCGGGGACCTGCACCAGAGGAACTGCACTCTGCTCATCAGTAATATTGGTACAGAGCACTCAGGGAGGTACTACTTCCGTGCCGACCTGGGCGGTGCCAACATCTACACTTACCCAGACTTCTCTGAGCTCAAGGTGCTGGACCAGCCGAACATTGACATCCCTGAGGAGATAGTCGCTGACGAGAATCTGGAGTTGACCTGCTATGCTCCAGACAACTGTCCAGAGAATAGCCCAGAGATCCAATGGATGTACACAGACTACCTGCCTGAACCTGAGTATACCTCAGACTACGTGGCAGAGAGCAACACAGCCGTGCTGTCCAGCACGCTCACCTTCACCCCCAGGCCCATGCACAACGGTCAGCTGCTGGGCTGCAGGGTCTCCTACCCCAACACCACCCTGGTCTACGAGAGACTCATCTCTCTGGACGTCAAGTATGCCCCTCGCTCGGTGTGGGTGAACGTGTCCGCGGAGGTGATGGAGGGCAGCTCGGTAACGCTGCACTGCGAGGTGGACAGTAACCCTCCTCCCAGGATCTCCTGGCTATTTGGGGACCAGGAGCAGCTGTGGGACACAGCCTCCAATGCTTCGCTCTCCCTGGAGGACTTAACCCCCTCTCAGGAGGGTATCTACACCTGTGTGGGGGATAACGGCTACGGCGTCATGAACACGTCCATGTACCTGGCCGTCTTGTACCCTCCCAGTGAGCCAGTGGTAAATGGCTCCCTGACCATTTTGGAAGGTTCCTCCATCTCCCTGCAATGTAGCACACAAGGCAATCCCACGCCCACCCTCACCTGGCTGAAGGACGGGGAGCTGGTGGGCACCATCACGGCCGCAGAGGTGTCTGTGCTGGAGCTTCTGAAGCTCACCCCTCAGGGAGACGGACAGTACCGCTGCCTGGCAGAGAACGAACACGGACGAGCCAGCAGCTCCCTCAACATCACTGTGGAATACGCCCCAGTCCTTCTGGACGAGTCCAAGTGCACAGTGGTGAGGGAGGGAGTCCAGTGTGTTTGCATGGCTACGGGTAACCCTGCTCCCATCATCGAGTTCTACCTCCCCGACAAGAACATCACCGTCAACGACACGGACGGCCGCTACAACTACTACACGCACACGGACGGCCACACGTCCACGGGCATGATCAAACTACGGGAGAAGGGCGAGCGCCTGGGCAACGGTGCTGTCAATGTGCACTGCAGCATTAGCAACACGTACGGGTCGGAGAGCTTTCATCTGGAGCTACAGCAGGAGAAGAAGTACATGATGGCAGTGATCGTTGGCACCATCGGTGGAGTGGCTGTCATCGCCTTCATCATCGCAGCAGTGAGATATGTGGGCCATAACAACAAGAACTTAAGACAGAGCTTCTGGGCTCAAAGTTTAACTCCATTCTAGAGGAGAGCACGGGAGAAGACGGGGATTATCAACCTGTGGGCTCTATGGCAGACCTGGAGAGGCAAGAGCTGAACTATGCCGCCCTGGAGTTTCTGGGGGGGCGCTCCAGGGATGGGGGGACCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU274449 lncRNA upstream 6222 26889877 ~ 26890387 (+) True LOC110516464
TU274503 lncRNA upstream 17550 26878814 ~ 26879059 (+) True G240208
TU274501 lncRNA upstream 19720 26876434 ~ 26876889 (+) True G240206
TU274476 lncRNA upstream 57432 26838250 ~ 26839177 (+) True G240181
TU274358 lncRNA upstream 111053 26769180 ~ 26785556 (+) True LOC110516329
TU274537 lncRNA downstream 138567 27050104 ~ 27050575 (+) True G240242
TU274573 lncRNA downstream 165328 27076865 ~ 27077077 (+) True G240272
TU274625 lncRNA downstream 218482 27130019 ~ 27132621 (+) True G240304
TU274637 lncRNA downstream 230933 27142470 ~ 27143522 (+) True G240316
TU274647 lncRNA downstream 243149 27154686 ~ 27155089 (+) False G240324
XM_036973651.1 mRNA upstream 6221 26866410 ~ 26890388 (+) False LOC110516464
XM_036973657.1 mRNA upstream 6221 26875065 ~ 26890388 (+) False LOC110516464
XM_036973652.1 mRNA upstream 6221 26880914 ~ 26890388 (+) False LOC110516464
XM_036973666.1 mRNA upstream 6221 26880963 ~ 26890388 (+) False LOC110516464
XM_036973650.1 mRNA upstream 6221 26880966 ~ 26890388 (+) False LOC110516464
XM_036973680.1 mRNA downstream 27268 26938805 ~ 26948749 (+) False LOC118936488
XM_036973679.1 mRNA downstream 30930 26942467 ~ 26948749 (+) False LOC118936488
XM_036973681.1 mRNA downstream 30930 26942467 ~ 26948749 (+) True LOC118936488
XM_036973686.1 mRNA downstream 70097 26981634 ~ 26994316 (+) False LOC110516512
XM_036973687.1 mRNA downstream 70097 26981634 ~ 26994316 (+) False LOC110516512
TU273986 other upstream 568278 26327408 ~ 26328331 (+) False G239752
TU273987 other upstream 568584 26327408 ~ 26328025 (+) True G239752
TU273930 other upstream 676426 26213642 ~ 26220183 (+) True G239697
TU273162 other upstream 1354996 25540769 ~ 25541613 (+) True G239026
TU272577 other upstream 1697375 25195287 ~ 25199234 (+) True G238540
TU274539 other downstream 139649 27051186 ~ 27051954 (+) True G240244
TU275097 other downstream 345051 27256588 ~ 27264393 (+) True LOC110516767
TU275557 other downstream 644635 27556172 ~ 27558532 (+) True G241150
TU275655 other downstream 803506 27715043 ~ 27723794 (+) True LOC110516984
TU275657 other downstream 835810 27747347 ~ 27749726 (+) False LOC110516993

Expression Profile