RNA id: XR_002472386.2


Basic Information

Item Value
RNA id XR_002472386.2
length 2168
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC110516475
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26928593 ~ 26978577 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAAGATAGATACTGACTCGACTCTGGCCTCTACAGATATTTTTACATTTCCCGCAGCCAGAAATGACAGAAAATATTTAGATATCTCCACCGAACAAAGAGAGctaagtgagacagacagagggctGGTACACAGTAGGGAGTGAAGATGCTGGTTGAGATCTGCACCGTGGCTATCTGCTGGATCATAACAGCAAGTTGTAGTCAGTGCATAGAGCCTCGTGAGACAGGTACAAACTTCTCCATCACAGTGACCCAAGACGTTACAGTAGAGGCTGGACGGTGCATTCCTATATCATGTAAATTCACGTACCCAGGCAACATTACTGAATACGTACGAAGAGTCTGGTTCAAAGGAGATGCACTTACACCTGTATTTGaaaaagatgcagaggtgtgcgGTGTTGTTTGGCAGTCCCTGAGAGGTCCTGAAAGGTCTTGCAGCTTTTTCCTCGAAGACCAACAAGAAGGAGAAAGCGAGTATAGATTCAAGTTAACATGGGGAGGTGATCAAATGTATGTCTTTCCTGAGAGGGTACGAGTCTCAGTGTCTGCTCTAACCCAGAAGAAGCCCACTGTGGAGACACCCCCtctcacagagggagagagggccacACTGACCTGCAAAGTATATTCACTCAAACTAAATGACCTCTGCCCGCAAAGACTGGAAGAAGATTTTGTTGGAATAgactggagagggacagagaacttAGGCATGTATTGGGGGATAATGGAGCCATCAACAGCAGAGAATACATTCAGTGTGAATAAGTTGTATTTCACTCCTAAATCCGAACATCACAACATCAACCTCACATGTATGGGCATCTACAAGAAGGCCAACATTACTGTGGAGAAAACGGTGACTTTAACAGTAAAATACCGTCCCAAGTTCCTgaatggctcggtgtgtgtggtCCAGGCAGAGgtcctgacctgtgtgtgtgtcagtcaggggGTTCCCTTACCAGTGATTGCTTGGCCAATGTTAGGGGTCTATATTAGTTACAGTGTCATCGTCTCCAGGAGTGCCCAAACCGTGACCAGCACCATCACCATGTCTGCCTCAGAATACAAGAACAGCAGCATGGAGTGTGTCAGCAGAAATGTAATTGGCCAGACCGAGATGGAATTCCCCGTACTACACCAAGCTGAAGGGAGCCTGACACGTAAGTTCTTCAGTTGAACATTCTATATATCCCTGGGTCAGAGAAGAGGGATGTTGCAGTCTTTCCCTGGATAATCGTTGGCTTGTCCCTCAGCCTTAATGTGGCCCTCCTTGTCTATCTGACCAGCGCTTGTAAATGCAAAAAGGGTGGACAGAAGAGAGCTAAAGAAGAAGATAGTACCTACATCTCATTGGACAAGGCAGACGTGTCTCCTGAATATGACATCATCTCCCCGAATCCCCATTGATCCTCTGCTTGTGATAAACTTCTACTTTATTTTAGCGTTTGGTTCTGAGGCTTGATTTTGCTCTTTTATTTCAATTTCAATTATTTTCTATTGCtatactttttttgttgttgcttgagCCCTGAAAACATTTTGACGTGAATGAATTCAACCTATTTTCTGAATAATGTCTCAAGATTTATGCACAAAAAAATAACTACATTGTAAGAGTTTTTCTGTAAAAGCACATACGGAAGCTACAAGTTCGTGTTATCTTCCACATGTTCAACTATGTTAATCAAAATGGTATGCAGATAATCAAGGTACCACagtatggaacgccgtttgggtatttccgtgtcaaaaaagatacacatcaaataacactatttgacacattgaataagcttttaatttgacatgtcaaataaaaCAGTTTAATTGTAGAATGTTGTGTTGGACCGCAACTTCTGGGCTAGCAGCTAGCTTTAGCTTAGTCCCTAGCAAGAGCCACATGTTGTTCGCCcgttgaaattgaacttcagttcatgacaagaaatagctagccagctcctAAACCctggtgcccaaagtaaacgttATATATTGCCAGCTAGCTTCATGAGGCTCGACcagaccgggttatgtgttgtgaagctagccacaataaggagtAGGCATAATAGTGGAATTTGCGATttgtcttcaaaataaaagttcctctttgaaagtgatgcagaaggtaacaactggtggaatcatgccatatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU274913 lncRNA downstream 3421 26928593 ~ 26966977 (-) True LOC110516475
TU274900 lncRNA downstream 4685 26911484 ~ 26965713 (-) False G240545
TU274981 lncRNA downstream 12300 26920762 ~ 26958098 (-) True G240615
TU274901 lncRNA downstream 55467 26911484 ~ 26914931 (-) True G240545
TU274902 lncRNA downstream 64306 26905117 ~ 26906092 (-) True G240546
TU274997 lncRNA upstream 2840 26981410 ~ 26981767 (-) True G240630
TU274914 lncRNA upstream 13897 26992467 ~ 26994270 (-) True G240557
TU274999 lncRNA upstream 18490 26997060 ~ 26997405 (-) True G240632
TU274916 lncRNA upstream 22499 27001069 ~ 27001515 (-) True G240559
TU274907 lncRNA upstream 71682 27050252 ~ 27050600 (-) True LOC110516606
XM_021594926.2 mRNA downstream 30823 26933378 ~ 26939575 (-) False LOC110516494
XM_021594930.2 mRNA downstream 30823 26933378 ~ 26939575 (-) False LOC110516494
XR_005042249.1 mRNA downstream 30823 26933378 ~ 26939575 (-) True LOC110516494
XR_005042247.1 mRNA downstream 30987 26933378 ~ 26939411 (-) False LOC110516494
XM_036973696.1 mRNA upstream 71422 27049992 ~ 27064455 (-) False LOC110516606
XM_036973697.1 mRNA upstream 71422 27049992 ~ 27064456 (-) False LOC110516606
XM_021595000.2 mRNA upstream 71423 27049993 ~ 27064454 (-) False LOC110516606
XM_021595003.2 mRNA upstream 71423 27049993 ~ 27064455 (-) False LOC110516606
XM_036973698.1 mRNA upstream 75199 27053769 ~ 27064472 (-) False LOC110516606
TU274804 other downstream 295365 26674592 ~ 26675033 (-) True G240464
TU274740 other downstream 400876 26569101 ~ 26569522 (-) True G240409
TU273578 other downstream 1145641 25823356 ~ 25824757 (-) True LOC110515750
TU272614 other downstream 1734031 25199088 ~ 25236367 (-) True LOC110515384
TU272445 other downstream 2023393 24937629 ~ 24947005 (-) True LOC110515208
TU275014 other upstream 92485 27071055 ~ 27075883 (-) False LOC110516631
TU275018 other upstream 99469 27078039 ~ 27079944 (-) False LOC110516631
TU275019 other upstream 105770 27084340 ~ 27085060 (-) True LOC110516631
TU274911 other upstream 133612 27112182 ~ 27112622 (-) True LOC110516667
TU275055 other upstream 176998 27155568 ~ 27158664 (-) True LOC110516678

Expression Profile