RNA id: TU274912


Basic Information

Item Value
RNA id TU274912
length 6184
lncRNA type read_through
GC content 0.35
exon number 5
gene id LOC110516475
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 26928593 ~ 26978577 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGGAACTAAAGATAGATACTGACTCGACTCTGGCCTCTACAGATATTTTTACATTTCCCGCAGCCAGAAATGACAGAAAATATTTAGATATCTCCACCGAACAAAGAGAGctaagtgagacagacagagggctGGTACACAGTAGGGAGTGATGCTGGTTGAGATCTGCACCGTGGCTATCTGCTGGATCATAACAGCAAGTTGTAGTCAGTGCATAGATATCCCTGGGTCAGAGAAGAGGGATGTTGCAGTCTTTCCCTGGATAATCGTTGGCTTGTCCCTCAGCCTTAATGTGGCCCTCCTTGTCTATCTGACCAGCGCTTGTAAATGCAAAAAGGGTGGACAGAAGAGAGCTAAAGAAGAAGATAGTACCTACATCTCATTGGACAAGGCAGACGTGTCTCCTGAATATGACATCATCTCCCCGAATCCCCATTGATCCTCTGCTTGTGATAAACTTCTACTTTATTTTAGCGTTTGGTTCTGAGGCTTGATTTTGCTCTTTTATTTCAATTTCAATTATTTTCTATTGCtatactttttttgttgttgcttgagCCCTGAAAACATTTTGACGTGAATGAATTCAACCTATTTTCTGAATAATGTCTCAAGATTTATGCACAAAAAAATAACTACATTGTAAGAGTTTTTCTGTAAAAGCACATACGGAAGCTACAAGTTCGTGTTATCTTCCACATGTTCAACTATGTTAATCAAAATGGTATGCAGATAATCAAGGTACCACagtatggaacgccgtttgggtatttccgtgtcaaaaaagatacacatcaaataacactatttgacacattgaataagcttttaatttgacatgtcaaataaaaCAGTTTAATTGTAGAATGTTGTGTTGGACCGCAACTTCTGGGCTAGCAGCTAGCTTTAGCTTAGTCCCTAGCAAGAGCCACATGTTGTTCGCCcgttgaaattgaacttcagttcatgacaagaaatagctagccagctcctAAACCctggtgcccaaagtaaacgttATATATTGCCAGCTAGCTTCATGAGGCTCGACcagaccgggttatgtgttgtgaagctagccacaataaggagtAGGCATAATAGTGGAATTTGCGATttgtcttcaaaataaaagttcctctttgaaagtgatgcagaaggtaacaactggtggaatcatgccatattaccatgttattaaacaaggttggaatgtgaagcaatgaaatggggtatcagtctactcggtgacacccacagaacacgactgtgaagagtttactcaaatattagcgttgtagctctgattgcgggactgtgactgtgtgaaatcgCCACCCaagtcagcctattgtgtgtattgacattcatattgtactgtacagctttacctaaggattggggatcaatgaaatagggtatcagtctactcaatacccaatatattttttcccaacgtcctcctcagagttatcagactccaaaacatccacacagtattgtttttcctctggaatagtgttcaatacacatagcttgacaataaatgtgtctcagttcagttgtttcagagtccagCAATAAGAGCTACAGTACGACaataatgttctctgggtgtcctGAGTAGACTGagaccccatgtcattgatccacaatctaTAGGTAAAGCTGTACTGTGAAATAAGTATATATTTTAAAAGTTTtaattcacttttatttaaccgggtaggccagttgagaacaagttctcgtttacaactgcgacctggccaagataaagcaaagcagtgcgacaaaaacaacaacagagagttacacataaacaaacgcacagtcaataacacaaaatatataaaaatagaaaaagttatgtacagtgtgtgcaaatgtaaaaAGAATTATACAAATATATATGAAATATATATGAAGAAAACTGATATATACAAGGGACGGGACAAGACAATCAAAACAGACATCCCCACTGCTACACCACATTGGTTTAGTATGctcccaatgcaattctaaagcaTAATccatccagtgtgatttcaacagatttttgtcaaattaacaaattattgtatttggtTGATTTTATATAACAGCATTCCAACCTCTTTTGGCATcatctattcaattatggcataattctactatttgtattaatttgcatcactgtcaatgacatacttttattttgaaggttaACCGCAAAATCCACTATTGTGGCTCattcttattgtggctagcttcacatagatgggccgaccaccattaatcaaataagaactgtcttataaattagggttattttagatgatgacacctagctatatagttagctagctactatagcTACAGAAAACAGATTAtttcgttttgctatgtttttggggaagaacattgtttgcatccataagctagctaactttttttatgaccagcactgtaggtgcgcagagaaaactttaccagcatcttttatattattttgtataaaatatattttttattcataatacaaaaatcaacTTACATTGCTACATCAAACATACATCAAACAAGAAAATACTCAAACATACAAAAAAtctataaaataatacaaaaaataaacaattttaGTGCAATTGTATTAACTCTGAAAATATCTTATTATAATGATTCAGGAATATGTTATTCTTGTTGTTATTCACTAGGGTTAATGTTTTAATAAGATAATTTAATTCAATCAGAAAAATGTGTAATTTTGGTATAGAATTTTGgaatttttgtttgtgtataaagtatttggcaaaaataataaaaaaattaacaatcatttcagtggttttgttatcattgcaatagtaacatattatatcttTCATGTTAAAAACataggcagtgttcataatggtaaataaGTATTTTGCAAGGTTTTCCATAAATTCTAACACAAATTTACATTCAAAGAACAAGTGAGACAGATTCTCACCTTCTTTTTCACAGAAAACGCAGATATCATCAATAGCTAGCTATACATTTGGAcatcatagaattacatggatatatcttaTGTAAAATTTTGAAATGCACTTCCTTTACTTTGTTTGGTAAACAGTATTTGTAAGGCCTTAACCATGGATTTTTCCAAACAATGTCAGGAATAAGCATGTTCCAGAAAAACCTTCCTCTCGGTGTAAGTTGGTTTTGTGAATTAAGAATTTGTCTTATATATTTATTAGAACACGATCCCTCAAGAAAGCCCACGCCTTCCAATCTGAGTTCTGGATAAACTTTGTGATCATTCCTAAAATGAAGATGAGTTTTCATAAGTGTAATTAGACCACTGGGAACAGCTTTGATCACAGAAATGAACTctctgaaaggtattggaaactcTTTCAATGTTATAAATTGTTCATATGTGAGAATATTACCCTTGTTGTCTAAAACATCAAGAACAAAGTCAATATTCCTCTCATGCCAGCTGGGGTAGAACAATGACTTATTCCTTACAGTTATGTCTGAATTattccacaaaagagctttatgtGGGGAAAGATTGTACAGGAAACATATTTTCCAGGCCATTAAAGCTTGTTGGTGAAATTTAGCCAAATTTAGCAGGTAATCTTTCAGGAATAGAATTACATTGCAGTAAAAATTGAAGACCTCCAATTTATTAAACACATTATTTGGAATGAAATACCATATTGAATCAGTATTGATCAAACATGTTTTCAACCAGTTTatcttgaaagtgttatttaCGTCAACAAAATCCAACACTTCTAGACCGCCTTCAGCTCTTTTGTTTGAAAGGACAGATTTTTTTAGTTCGTGAGACTTATTTTTCCAGATGAAGTCAAGAAAGGTCTTATTAATCTCTTTATAAGTAGCTGGATTTacacataacaataatgaggggtacacaaaacgagacagtccctctgccttGGACAGAAGTACTCTCCCAAGTATAGAAACATCTCTTTGTAGCcaattattaaatatatttttagttCAAATTCAAATGTTGTCTGACTAAGTGGTTTTTTGACAGATGAATTCCTAAATATTTAACAGGAATATATCATTTACAGGAATATTTTCTCTTTCTTTATCACCCGAGTCAAATAAACATAAGATTTCACATTTAGAAACATTCAGCATTAATCCTGATGCAATAGAAAATGCAGTTATAGCATTAAGGGCATGGGCGACCTGGTCTTTGTCTCTTAAGAAAATAATAGTATCATCAGCCAGTTCGGAGATTTTGATTTCTTTGTTAAAAATGGTTAAGCCATACAAATTTGCATTATTCAGAATATCTAGAGATAGAAGTTCCACAaccaaaatgaataaaaatgGCAAAATTGGGCATCCCTGTCGTGCACTTCTGTTGATACTGAATCTTTTGGAAGTATTAAGGTTTAGTAGCACAGAactatttatatatttgtatAAATAGTTATGTGCTACTAAATCCAAAAAGTTTAAGAGACCAAAAGAGAAATTCATGTTCAATTGTGTCAAAGGCTTTACAGAAGTCCAGAAATAAGACAACCGCATCTGAGTCAATTGCATCTGAATAATCTATAAGGTCCAAGACTAAACGAATGTTAGAGTTTATCTGACGGCCCTTCATAAATCCTGTTTGGGTCTCATTTATAATGGTATCTATTCTATGTCAATGAGAGAAGGGTCTTTATCGGGAATCAATGAAATAAGGCCCTGTTTCATAGTGGATACCATTTCCCCATTTTTTATGCAATCTTGAAACATATTGAAAATTGGGTCTTCTCGTAAATCCCAAAACTGTCTATAGAATTCAACTGACAGGCCATCAGGGCCAGGTGATTTCCCATTTTTCATTGAATTCAGAGCCTCTCTAATTTCTTCAATTGACACAGGTGAATCGCAAACTGAGTGGAAATCATCCTCAATTACAGGGACATAATTATGAATGTGGCAAATGTAGCTTTCACAACCATCTTCCTGAAATTGAGAGCTGTTGAGGTTTTCATAAAAGGAATTGACAAATGATGATATTGTAATGGGATCTTTGCATAAAACATCATTAGTTTTGAGTGCAGTTATACATTTTCTTTTGTAGTTTCTCTTTTCAAGTGCAAAAAAGTAACTAGTGTTTTTCCCCCCCTCTTCAATCCATTTTACTCTTGACCTTACAAAGGCGCCCTTTGCCAGATCCATGTAAAGCTGTTCTAATTCTAGTTGTCAAGAATTGAACATAGACTCCTCTTCTTCAGATAGATGATCTTTCTTTAGAAAACTGTCAAGCTTGCTCATCTCCTTTTCTCTAAGGTTCTTTAATTGCATCAGCTCTTTGGAGCGTTTAATGGCTACCACTCTGACTTTATATTTGTCACGTAAATCTAGAACAGATTTATTCCTAACTTCCCCTTTTTTGTTACAATTTGTTATAGATGTAGATCATCAGTTGGCTCCCATTTCTGATCATCACTTGATTTACCTGAATTTACAAGATACAAAAAAATCAAAAGGTACTCAAGGATATTGGAAATTAAACAACACATGTCTTCAAGATACTactctcattgaaaacatcaattCATTAGCTAAAGATatattttttgaaagaaaagacTTGGGTCATGGAAGTAGATGGGAACTTTACCAGTATCATAGCATATGAAATATGAGttatagtgtaatcaatgtgtaataaatacataaaaaatgatttaatgcgtccaattattatgtgacgtgcatcattttcaggtcctgattggtcaacaagcttttTTAGTGTTATTTAGTGTTAtttgttatttgacgtgtatcttttttgacacgccaAGACCCAAACGGTGTTCCATACCACAGTTGCAAATATTATCAAGTGAAATGGTTTTAAAAATGCTTTGAGTGATGTCGCTTCTGCAAACAATGAGGGGTGGTGTGGGAGGAATAACTGTTACATACTGTATTAATTTAGTCATACTAATACATGGAGATATAGAATGTATTTGGGGTGTATTTTCCTTACTGTTTTGGGTATGAGAGAACAGATAACACACTATATAGATAAACTGAGTGGGTCACATTCTCTGTTGtttactttatttatttgttgtttGGACCCAAAGAAAGATGGCTTTGCTTGAGGCGGGACAGACTTGTAAAATAAAGAGAGTGATCAAACATCATCTTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU274901 lncRNA downstream 13662 26911484 ~ 26914931 (-) True G240545
TU274902 lncRNA downstream 22501 26905117 ~ 26906092 (-) True G240546
TU274966 lncRNA downstream 37421 26889876 ~ 26891172 (-) False G240601
TU274967 lncRNA downstream 38238 26889876 ~ 26890355 (-) True G240601
TU274950 lncRNA downstream 50577 26877236 ~ 26878016 (-) True G240590
TU274997 lncRNA upstream 2833 26981410 ~ 26981767 (-) True G240630
TU274914 lncRNA upstream 13890 26992467 ~ 26994270 (-) True G240557
TU274999 lncRNA upstream 18483 26997060 ~ 26997405 (-) True G240632
TU274916 lncRNA upstream 22492 27001069 ~ 27001515 (-) True G240559
TU274907 lncRNA upstream 71675 27050252 ~ 27050600 (-) True LOC110516606
XM_036973675.1 mRNA downstream 47551 26831176 ~ 26881042 (-) True LOC110516351
XM_036973676.1 mRNA downstream 47585 26831176 ~ 26881008 (-) False LOC110516351
XM_036973677.1 mRNA downstream 76870 26831176 ~ 26851723 (-) False LOC110516351
XM_021594832.2 mRNA downstream 76872 26831176 ~ 26851721 (-) False LOC110516351
XM_036973696.1 mRNA upstream 71415 27049992 ~ 27064455 (-) False LOC110516606
XM_036973697.1 mRNA upstream 71415 27049992 ~ 27064456 (-) False LOC110516606
XM_021595000.2 mRNA upstream 71416 27049993 ~ 27064454 (-) False LOC110516606
XM_021595003.2 mRNA upstream 71416 27049993 ~ 27064455 (-) False LOC110516606
XM_036973698.1 mRNA upstream 75192 27053769 ~ 27064472 (-) False LOC110516606
TU274804 other downstream 253560 26674592 ~ 26675033 (-) True G240464
TU274740 other downstream 359071 26569101 ~ 26569522 (-) True G240409
TU273578 other downstream 1103836 25823356 ~ 25824757 (-) True LOC110515750
TU272614 other downstream 1692226 25199088 ~ 25236367 (-) True LOC110515384
TU272445 other downstream 1981588 24937629 ~ 24947005 (-) True LOC110515208
TU275014 other upstream 92478 27071055 ~ 27075883 (-) False LOC110516631
TU275018 other upstream 99462 27078039 ~ 27079944 (-) False LOC110516631
TU275019 other upstream 105763 27084340 ~ 27085060 (-) True LOC110516631
TU274911 other upstream 133605 27112182 ~ 27112622 (-) True LOC110516667
TU275055 other upstream 176991 27155568 ~ 27158664 (-) True LOC110516678

Expression Profile