RNA id: XM_021594977.2


Basic Information

Item Value
RNA id XM_021594977.2
length 2406
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC110516537
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 27004845 ~ 27011081 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGTTAGATCTCTTTATGTACAGTACCGGTCAATTATGTTGATTTATGACTACATGCACATTTGCTGTACAACTACACAAAATGACACTATTACTGATTTTGAATAAGTTACAAATTATAGTAATACTTCAGAATTTATCTGAATATATAAGCTACGGGATTGTAGTGTTGGTTGATCGGTATGGATTGATGGGTTGGTTGATGGGCTTGGGTTGATTATGGTCTATATACAGTCCAGTATGGCTGGGCGGTGTGCTGTACAGAGGGACTTCCTGGATGCAGCATCAGGTTAGAGGGAGGAGTAACAGACTGGGGACATGAAGTGACAGTTCACACTCATCAGAGACTCACACATGGCTCACAGTCAACAAGAAGagagagcacacagagagagACCTGTGGACACAGACAAGGGGACCAGAGAAAGAGGtgaaagaggacagaggacagagtgtTGTGGTTGATTCATTGAGGCAGTGGAGACAGGATGTGGGTCCTCATTTTGGCAGCTCTACTCTTCTCTCTGGCAGAGAGAGCAACATGTCGAACACCACCAGCAGCATCACCCTGGACCATCACCTTCAGTCCAGCAGAAATAACAGCAGAGAAGGGACTATGTGCTGTTATTTCATCTCTGACCCAGAAGCCCTCAGTATTGACTCCTGCTCTGACAGAGGGAGAACCAGCTACTCTGACCTGCACCGCCCCGGGGATGTGCTCTGGAACTCCTCCTAACATCACATGGAcatggagaggaacaggagacaaCATCACTGAGCTCAGAGACAACATCAccatacaggagagagagaacctgaccactgtgacgaCAACCCACTTCTCAACGTTGACCTTCACCCCCTCAGCTAAGCATCACGGCACCAACGTCACATGTCTGGTGACATTCAATGGCCGCATCACCACTAAGAAGACACTGACAATGAATGTGGCACATGTGAAGGAACCCAAGATCTCTGGTTGTAACACAGTGAGAGAGGGTGATACCCTGAATCTGACCTGCAGTGATGACAGATACCCACCATCATCATCTAACATCACCTGGAGTAAGAAGGGGACAACAGCTTTGGAACAGAATAACTCTGGACGGGCCACTCTCATCATCTCTAACATGACAAGAGAACATGCTGGGGAGTATGTGTGTACAGCTCAACACCACAGTAGATCTCTGACGGCTTCCACTGTTGTCACTGTGATGTTGATCAGCACCATCAGCCTGCCTGTCAGAAACCACACCAATACCACTATGGAGTGTGTCAGCAGAAATGAAGCgggcagagtgagagaggtgCAAGTCACCCAAATAGAAAAACAAGAAGAGGATGTGTCTAAAGACATCATGGCTTTGCTGTCGGACCTACAACTGATTACTGCATTTGTGGTTGGTGCATCCCTCTCAGCCACCATCTTTTGTATCTTCCTGTGTTTGAAAGGGAAACGTAAAAGACAAAAAGAGAGGATCCCAAAGGACTCAGACTCCAAAAGCCCGTTCATGAACCTGGAGATGGTGACATGTGAAGACCAACAGATGGATGCAGGACAGGCTGTGGGAGGCAAACAGACCCCTCTGCAGGTGGagctgagggagggagaagaaaaCGGAGGGCCCCAGACCAGTGGAGCCGTAGGGAAATCTACCACAGGGGGAGAACCAAATGAAGTGGACTACGCCAGTATCAACTACTCCCTGCTGAAGAAGAAGACTCCTGAGGAGGCAGAGAAGAAGACCACCACCACAGAGACAGACTACGCCGAAATCAAACGACAGAAGAAGAATGAGGAGGAAGAAGATGGTGGAGAGGGGAGTGGTGTGATGGAAGAGGTGGaatgggaggaaggggaggagacggtagggaaggaagaggagaaagagaacagTAAGCCATTACGAGAGACAGATGAGGATACAGCCCTTTACTCCAACGTCAAGGCTATTATGGGTGGAGAGTGACACAGCAATGTGGGAAATAGCGCACAGTACTATGGCTTCTAATATACAGCACTGCAGTGTTTTCTCAGATTGAATGTTTTATGATGATAGAGACTTTGTTTAACTGAAACTACTGCAGGAAATAGTTTTGGTAATTCTTTATTTTTCAGCCTTGTATAATGTAATGTTAGTTTTGTAATGATTCTGTTTTTGTGTCACCATGGAAGGACATGGTGTCTCCTCTGATCCTTCATGTTTTTGTATTTtgatttaaccctaaccctatatatTGAGGCACTACCTTACttttgatgtttgtgtgtgttttagttgttTGCTATCTGCTAAGAATTTCTAAATGATGTTTTAACTGTCTTGtagcatgatgtactacagtacccataatgctctgtaTCAATATACGGTTTCATCTTGGTAAAGACGTTCCTAAAGCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU274449 lncRNA upstream 114468 26889877 ~ 26890387 (+) True LOC110516464
TU274503 lncRNA upstream 125796 26878814 ~ 26879059 (+) True G240208
TU274501 lncRNA upstream 127966 26876434 ~ 26876889 (+) True G240206
TU274476 lncRNA upstream 165678 26838250 ~ 26839177 (+) True G240181
TU274358 lncRNA upstream 219299 26769180 ~ 26785556 (+) True LOC110516329
TU274537 lncRNA downstream 39023 27050104 ~ 27050575 (+) True G240242
TU274573 lncRNA downstream 65784 27076865 ~ 27077077 (+) True G240272
TU274625 lncRNA downstream 118938 27130019 ~ 27132621 (+) True G240304
TU274637 lncRNA downstream 131389 27142470 ~ 27143522 (+) True G240316
TU274647 lncRNA downstream 143605 27154686 ~ 27155089 (+) False G240324
XM_036973686.1 mRNA upstream 10539 26981634 ~ 26994316 (+) False LOC110516512
XM_036973687.1 mRNA upstream 10539 26981634 ~ 26994316 (+) False LOC110516512
XM_036973688.1 mRNA upstream 10539 26981634 ~ 26994316 (+) False LOC110516512
XM_036973689.1 mRNA upstream 10539 26988962 ~ 26994316 (+) True LOC110516512
XM_036973681.1 mRNA upstream 56106 26942467 ~ 26948749 (+) True LOC118936488
XM_021584238.2 mRNA downstream 1896 27012977 ~ 27014227 (+) True irgq2
XM_036973692.1 mRNA downstream 5377 27016458 ~ 27048676 (+) True si:dkey-24p1.1
XM_021584252.2 mRNA downstream 172702 27183783 ~ 27185128 (+) True LOC110505196
XM_021595061.2 mRNA downstream 174301 27185382 ~ 27195269 (+) False LOC110516690
XM_021595070.2 mRNA downstream 174301 27185382 ~ 27195271 (+) False LOC110516690
TU273986 other upstream 676524 26327408 ~ 26328331 (+) False G239752
TU273987 other upstream 676830 26327408 ~ 26328025 (+) True G239752
TU273930 other upstream 784672 26213642 ~ 26220183 (+) True G239697
TU273162 other upstream 1463242 25540769 ~ 25541613 (+) True G239026
TU272577 other upstream 1805621 25195287 ~ 25199234 (+) True G238540
TU274539 other downstream 40105 27051186 ~ 27051954 (+) True G240244
TU275097 other downstream 245507 27256588 ~ 27264393 (+) True LOC110516767
TU275557 other downstream 545091 27556172 ~ 27558532 (+) True G241150
TU275655 other downstream 703962 27715043 ~ 27723794 (+) True LOC110516984
TU275657 other downstream 736266 27747347 ~ 27749726 (+) False LOC110516993

Expression Profile