RNA id: XM_021595003.2


Basic Information

Item Value
RNA id XM_021595003.2
length 5804
RNA type mRNA
GC content 0.42
exon number 11
gene id LOC110516606
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 27049992 ~ 27064472 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCTAAGCCCTTTGAATTGTACGTTTAGGATATCCACATTACAGTTTGCTTTTACTTCTTCTTTGAATGGTGGCCCATTGAGTAGTAACTATGGAAAGTAACAAGTTAAGCAACATATCAAACGTGTCATTTCCTTCAGCCACAAATGTCTTGAGCAGTTATTGCCCCATTCAACTGGAACTCGCTGTAAAAATAGACATGAAACTACATGATTACATTTGTGGATTTAAATCTCTGGATGAATTACTGTTGGCTGTATtcctttaaaataaaaatatgtttaaaaaagagaaataaagagaaataTTGCAAGGGGCTGTAGCTTTCTGTGTAATTTACAGGTCACTGGATTATATGTCTGCTTGTATTTAATCTGGAATCAGAAGATGTTGCCTTCCTTGTGAAGCTTGATATATTTCACTAGTAACTGTCATTGAAAAGAAAATCTGATGATCATTTGATACTACAGATGGAGGCTATCACTTGTGGGTTGACGCTTATTCAACGAAGGAAAATTCTGTGTCTTGCAAACAGCAGTGCCACTTCTTCTGAATGTCTGCAGTGACAGGCAGCTAGACAACAGACAGCGTTTATATAGCCTGAATTGTgcattggatttgaaatgatgacCATCGCGTGAATACTGacAGTGTTAAAAAGCAGGTCATCTGGCCCTTTCTGATACAGAGAATCATGCACATCACAGGAGTTGAAAGACTGATCCTCATTGGTGGTCTGCTGCAAGGTGTTCTGTGCCTCGACTTTGCAGCTCTGATGCCTCAGAATATAAAGGCTCTGAGTGGATCTTGTGTGAACATTCCCTGCTCATTTACACTGCAATTAGGATTTGAGTCGTTCCTCACAACTTCATGTAAAGGAATATGGAGGAAAGGGTGGCCAGAAGTACAGGTGTTTGATTCTAGTCTCACAGGAACAGGCAGAAACATCATTCAAGGGAATCTAACTGGGAACTTGCAGCAGAAGGAATGCACCACAATCCTGAATGACCTCACATCTTATCTCAATGACTACTTTTCATTCAGAATTGAATGTGACAATTATCTGAAATATAATTTTCCAGAACTTGTCACAATTTATGTAGAAGAAAATCCTTCCAAACCCACTCTAAGTCCAGCAACAGTAAATGTGATGGAGGGGACCTCAGTGAGTCTGATCTGCTCTGCTGCAGCCCCctgtccctcactccctccaaCTCTGACATGGACCCCCACACTGAGTAACAGTGTGGAGGATTTGCAGGTGACTCCGAATCGAGTCATAACTTCTATCCTGAACTTTACCGCTTCACATGTCCACCATGGGGAGAAGATCTCCTGCACTGCGCTGTACAAACGACAAGCTGGCAAGAGTGATAAATCATCCAAAACTGATCTGACAGTCGCTGTTCTTTACTCTCCCAAGAAcacctcagtgtcagtcagtccctctggttCAGTGGTAGAGGGCAGCTGTGTGACTCTGACTTGCAGCAGCAATGCTAACCCAGCAGTGGGGCGCTACAACTGGTACAGAGTTATTGGAGAGCAGGTTTCAACAGTGGGGGCTAGCATAATGCTAACTGTCCAGGTACCAGCAGATGACAGTTATTTCTACTGTGAAGCCATCAATGACCATGGAACCAAGAACTCATCTGTCATTCAACTAAATGGAATGTACCCTCCCAGGAACACCTcactgtcagtcagtccctctggttCAGTGGTAGAGGGCAGCTCTGTGACCCTGACCTGCAACAGCAATGCCAACCCTGCAGTGAAGAACTACACCTGGTACAAAATCAATGGGACTGATGCTGTCCTTTTAGGATCTGGAGAGAGCTTCACCTTAGACAGTAAAGCAAGTGATAGCGGGGAGTACTGCTGTGAAGCACTGCATGCACTCGGTACAGAAAAAGCCACAGTTGTTCAGCTGGATATTCAATATCCCCCCAAGAACACCTCattgtcagtcagtccctctagCTCAGTAGCAGAGGGCAGCTCTGTGACTCTGACTTGCAGCAGCAATGCCAACCCAGCAGTGAAGAACTACACCTGGTACAGAGTTGAGGGAAGGGAGAAGGACATTGTCGGGTCTGAAGAGGACCTCAACATCTCCAGTGTGACCAGGCTTTCAAATGAAAAGTACTACTGTGAGGCTCAGAATGTCCATGGACTGCAGACCTCTGAAGCCATCAGTATCGATGTAacgtTTGCTTCAGAGATCCTGAACACCTCTCACTGCATCAGGATTTCAGCTACATCTCAGATCAGATGTTTCTGTGATAGCTATGGGAACCCTGCTCCCACACTGGTGTGGCAACTGGCTGGAGAGTCTGTCAATCACTCCACTAACACCATCATCAGTGAGGAGCCAATGGGCCGAGCAGGCCTGAGCAGCTCCCTCACCATCCACCAATCACAGAAAATACAGAGTCTGGTCTGCCTCAGCTCCAACTTTATTGCTTTTGACAGCTTCTCATTTGACTTAACATCAATGAAAACATTGGAAGGTTTCCATCTTCCCTCTCTGTTGATCGGGGCTGGTGTGGGGGCAGGAGTGATGATGCTCCTATGTATCCCACTGCTTCACTTCTGCAAGCATAGGAGACCCAGGCAGTCACCAAACAAAAGACAGAAGGACACAGCAGAGTTCATAGTGACGGATGAGACCCTCTTTCAGGAGGAGGACAATGTCTATGCAAATAAAGCCATGCTGGATGAGGCCCTTGGGCCCAACAGGACAGTGGACAGGGAAATCGACGACACAGACCTCCTCCACTACGCCAACTTGAACTTCTCCAAACTCCAGGCCAAGGTGGCCGAGcggggggtgggggagggagagatcagGGGAGTCGCCTCCAAAACGACAGAGTACGCAGTGATCCGCCTGCACTCCACAGGCAGTATCGAGGGAGGGGCTGAGAAGAAGGAGGCCATTCCTGCTCTGGAGCAGGGGGAGCACGCTGAGGACCATGGAGCTAAAGTCTTGGAAGAATCCCAGGCAGGGCACGAGAGTGACGAGGAAGAAGAAGTTGCAAAGGATTCTGCGCTGCCAGAGCTACAGGGTGTGACTAATTATGCCCTCAGTGTCCAGGAGTATACAGAGGCCCCACTGGGACAGTCTGAGCAGCACAACACAGCAGAAACTGCAGTGGACGAGGTGACACTGCTTTCTGAGCCGAAAGATTCCTCTAATGGTGAAGAGGAGGAAACATATGGGAACATATGTCGTGGTCAGGTCATATCTGAAGCAAATTGTGGACAACCTGAGTTAGATAGGAGGAAGAGTAGGAGAGTGTAAAGGCATAGTAAGCTGATGTATAGAGGGAGTAAAGCTTAAATGCAGATAAGGTTGAGAAAAATCACCCATAATGCACTGCAGAGAAATCCTCGTCACCTTCCAAACTAGAACCACTATGTCCACCTTTTTTTTAACACCAGTTATTCTACAGTGTCTGTTCATCAGTTGGATTTTCATCtctatatatacaatatatacaaaagtctgtggacaccccttcaaatgagtggattcggctatttcggCTTAAAATGAAATCCAATAAGGAAATACATTAGATTTTGTCCTGCTGATCTACACAACCaacacattttcaaagtgaaagaacaattctatatatatttttccaattgaataaaacaaaaaaacaaagatgTCTTGATTGCGTATGTTTTCACACCCCAGAGgtaatacttggtggaagcaccttgGGCCGCCATTATAGCTGTGAATCATTTTGAATAAGGTTCTACTaactttgcacaactcttaggCTAACACATACCCATTGTTTTTTGTCCAAATAGctcaagctcagtaaatttggtttgggagtcattgatggacagcaatattcaaacatTGTCTCTAATtgtcaagcagatttaagtcagcaCAAGCCACAGTACTTGAAAATACAGAGGGTTTCACTCTGTGTTGTATAGTTCTGGATTTGGCCCGTGGTTTTTAATTTAGGCCAGAAAAATGCATTTCCCGTGTtgtcttgcagtattacttaacagCCTTGTTGCCAACAGAATgtttgatttgaagtggattttttttaacacaggcttcctccttttcactTTTCTATAGAGGCTAATAATGTGGAGTgaatgcaatgttgttgatcctccTGTTTGTGGTGGAAACAATGTGTTATTGGTGTGCTTGACCTCAGCAGGGATTGGAGAGTTTGTCAGGATCATAATAAATATGAAAGGAGTAAAGCCCAGATTAACAAAACCCAGATTAACAAAACCCAGATTAACAAAGCCCAGATTAACAAAGCCCAGATTCAGTCTTCTGAATACCAAACACTGGGATGGAGTTGTATTTTTCAGCGAGTCAATTGTACACATTTGAATCtcaaagacacaccagaatggctttccaataGCTGTTGACTGCTTCTGAATGGTCCAGTGTGGTTCAGTCCTGACTTAAATCTGCATGAAAATTTGAGACAAGGGGCTGGACTCAATCCGTATCGCTGTAGTCAAATCcaatgaaaatcaaatcaagaagctgattttcaAGGTTTGAATtttgctgtccatcaatgactCCCAAACAAATTTACTGggcttgagcaattttgacaaaaacaaggTGTATATGTTGCCCTATGAGGTGTTCAAAGTTGGTAGAATCTAATTCAAAATGATTGACAGCTCTAatgactgccaaaggtgcttccaccaagtatttactctggggtgtgaagacataaTTAAGACAGCTccgttatttttttatttatttattaatttggaaaacgttctgtattttttttctttcactttTAAAAAGTAGAGTAAGTTATGTACATCAGTAGGAAAACAATCAAAtgtcatacattttttatttacttttaagGCAGCAACATTTTAAGactgtgcgggggggggggggggggggtgtacactttcactaggcactgtgTATGTTTTTTTATTCTGACTTTTTAACTGTGTTTTTATAGATTAGTGTCGCTCCTTACATACATTTTCAATGAATTAAATGTTCATCTTGCAACAGTTAAGAGTgtaatatttgtttgtttttctaaGTTTTGTTCCTCTTCTATGAATTTGTAACTTATTGTTGCACAGAAAATGTGTATTTATGAACTTACAAAATGTGTGTGATGGTTATGAATCACTTCAACATGTTGTATTATTGTTTTTATTGTCTTTttttattgaaaatgtatttacaatgttTAAAGCTGAATACAGGTGAATACAGGTTACAAGCAGTCAGTAATTTCAGCATGATTCAGTAACTATGTAAAGTCAGAAGTCAGTAATAATGCACGTTGCAATGTTAAACAAATATGAAGACATGGTGTCAGTTGCATAGCATATACACAATAGCACATCCTGTAATATGGGAAATTTCTAAACAGTGAAGCATTTTTGGTTTGACAGCCTAGTAAGCACACATTGCATTGATGTACCACACGATGTTCAAACCCACTTTGAATGACGTCAATAAACTCTGTTTTCTGCCATTGTGGTCTTGACTGACTTGTAATTTCAAAGTACAGTTAAGGCAACTACCGGTTCTTGAATGTGTTTTTATTGCTAACTATCCAGATATAAAgcactagtcaaaagtttggacacactcattcaaggtttttctatatttttactattttctaaattgttgaacaatagtgaagacaacaaagcgatgaaataacacatatggaatcatgtagtaaccaaaaaagtgttgaacaaatgaaaatattatattcttcaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU274916 lncRNA downstream 48478 27001069 ~ 27001515 (-) True G240559
TU274999 lncRNA downstream 52588 26997060 ~ 26997405 (-) True G240632
TU274914 lncRNA downstream 55723 26992467 ~ 26994270 (-) True G240557
TU274997 lncRNA downstream 68226 26981410 ~ 26981767 (-) True G240630
TU274983 lncRNA downstream 77639 26934798 ~ 26972354 (-) True G240617
TU275020 lncRNA upstream 11793 27076248 ~ 27076746 (-) False LOC110516631
TU275033 lncRNA upstream 41559 27106014 ~ 27106764 (-) True G240665
TU275056 lncRNA upstream 90324 27154779 ~ 27155085 (-) False LOC110516678
TU275057 lncRNA upstream 90380 27154835 ~ 27155496 (-) False LOC110516678
TU275058 lncRNA upstream 90705 27155160 ~ 27155496 (-) False LOC110516678
XM_021594912.2 mRNA downstream 71423 26970398 ~ 26978570 (-) False LOC110516475
XM_036973699.1 mRNA upstream 6459 27070914 ~ 27097227 (-) False LOC110516631
XM_036973700.1 mRNA upstream 6459 27070914 ~ 27097259 (-) False LOC110516631
XM_036973701.1 mRNA upstream 34085 27098540 ~ 27103054 (-) True LOC110516644
XM_036973704.1 mRNA upstream 46629 27111084 ~ 27127488 (-) False LOC110516667
XM_021595034.2 mRNA upstream 63644 27128099 ~ 27151658 (-) False LOC110516655
TU274804 other downstream 374960 26674592 ~ 26675033 (-) True G240464
TU274740 other downstream 480471 26569101 ~ 26569522 (-) True G240409
TU273578 other downstream 1225236 25823356 ~ 25824757 (-) True LOC110515750
TU272614 other downstream 1813626 25199088 ~ 25236367 (-) True LOC110515384
TU272445 other downstream 2102988 24937629 ~ 24947005 (-) True LOC110515208
TU275014 other upstream 6600 27071055 ~ 27075883 (-) False LOC110516631
TU275018 other upstream 13584 27078039 ~ 27079944 (-) False LOC110516631
TU275019 other upstream 19885 27084340 ~ 27085060 (-) True LOC110516631
TU274911 other upstream 47727 27112182 ~ 27112622 (-) True LOC110516667
TU275055 other upstream 91113 27155568 ~ 27158664 (-) True LOC110516678

Expression Profile