RNA id: XM_036973699.1


Basic Information

Item Value
RNA id XM_036973699.1
length 3882
RNA type mRNA
GC content 0.50
exon number 16
gene id LOC110516631
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 27070914 ~ 27097259 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGCTATTGACGCTTTCCAATGGCCCTTGGCATTGACAGCGACACAAGACCACCCGCGAGGTGTGTTGGCCGGGTGCCAAGCCAAACTGCTTTTGCGTTAGCCTATAGCGAGCCTATAACGAGGGCATTACAAAGTCATGTCGTCGCGGGAAATCCCAGAATAGAGTTCTCATTTCGGTGCGGAGCCCCCTCACAAATAGACCACAGAAACTGTATAGTCAGTTAGTGACGCGCTCAGTCGCGTTTTCACACTAACTTTGTGTTGGTCAGTGTGCCCGCCTCACATGCATTCTATTTTACCTGTTGACGACGACTGCGATCTGTCATTTATCGTGGGATTGATTTGAAATGATTGAATCaaaccagagagaggagaacataGACACCAAAGGTATTCAGACGTTATATGACAGCAAACAGAAACTCTGAAAGTTCTCTGGATGTAGTGACTGAAAGCGAAAGCGCGCTTCCCGTTTAAACCCATCACTTCGTTATTTAGTCACTCTGTTTTTATGAGCGTCTATTTTATTCAAACTCAAGAACAACAATACACATTCCCCACAACAAGAACGCTTTTGAATAGAAAGCGGCGTATTCTCAGagtcgtggctgaacgacgacatgaataacatacagctggcaggttatACACCCTATCGGCAGgttagaacagcagcctctgAAATGCCCCTCCACAATATGGACACCCCGAGGAGCCGATGGGAGCAGGGCTTGCGGCCGCCGTGGGTCGCACGATTGTCTGGAGGGCAAAGCCCCGCCTCTTCAGGGGTGGAGTcagacacagagagcagcagcacagagagcgagaggtCTCCAGCCAAACGTTTAGAGGCGCGGTCACCGAGGATACTACCGTTGCCCTCCATGCTGCAACAGCGAATCACAGAGATTGACCAACAGAGGGAGGAGCTAAAGATAGAGCTGCAGCTGGAGATAGCCCTGTTGGAGGGTGAgctgcaggaggagaggaacgaGCTGCGCAGACACACTCTGTATCTACAGACACTGCAGGAGGAAGGCGGGCAggaggagacacacagacagacggacagacagaaggaGCGAGCCAGTCTGGAGGTGGAGAGGGCCCGGGTTGAGGAGCTGAGGAGTAGgttggaggagaaggagacattGCTCCCCAGTCAGCCAGAGGACCAGAGAGAGCAGCTACTGATCCAACTACAACAGgagAAAGAGACGGTGGATGCAGCCGGCCGGGTGTTCGAGGACTGGGAATTCCGTGTCCTGGAGAGCGAGGCcggaatagaggaggaggagagtgaaggaaagatggaagggaaggagagagggaacgaggaagATAAAGAGAAGGAGATCTCATGCCAAAAGAATGCTGTCAACTCAGCGCAGGACCGAGTCCAGCAGCTTGAGAAGCAGTTGaaggagatggagcgagagaaggacagagagatgaaTGCCTtcaagaaggagaggagagaattgcTCCACACCACTCAAAGGGTCTTGAAAGAGAAGAAGCCACTCGCTGATTGGTCCAACATCCCCAGCTCGGTCCCTTGCATGATGTCACTCTCGCCGCTGACCATTCACAAATCACCTCAGGAACAAGCCAAAGAATCCGTCAGTTTACCCCGGAGACGGAGCTCGCACCGCAACAATAAGCTCGCCGATAGACCGGTCTCGGCGCAAGGGCTGGTGAGAATGGTACCTGACAGTCCGAGCCCAGAGCGCTtcacttcccctctcccctcccaccgGCACAGCAACGGGCACAGCAACGGGCACATCAATGGGCACAGACCTGGGCCCAGCAATGGCAGTGATCTCCTCACCCCCTGTAACAGTGCTAGTAGCTCCCGTGCTGCCAGCCCAAATCTGGGACTTTTAAACCTGGTGGAGAttgagaggagactgagggaggccaaagcggagagagagaggcttctcAAAGAGAGGGAGGAAAGGAggcaggtggtggaggagaggaggcagagagagctgGAGGGCCAAGGAGCAGCAGAACCAGTAAAGTCCCAGAGCAGGCTAGTCCCTGACCCAGAGGAGAAGCCCAAAACCACCAGTCCTGTCCCCAGCTCCCCTGAGCGCTcgctacctctcttcctctctgcgaACTTTGACCTGCGGGCCCACGTGGAGTCGCTGGGTCACGGGGTGGCGGGGTGCATGGGCCTGCGTATGTCCCCGCGCCGCTGTGCCGGCTTCTTGACCAAGCGAGGGGGGCGGGTCAAGacctggaggaggaggtggttcCTCTTCGATATGGACCACAGGCGGCTAGCCTACTACACAGACTGTGATGAGAGGAAGCTGAAGGGGGTGATCTACTTCCAGGCTATAGAGGAAGTCTACTATGATCACCTGCGCACAGCCACTTCAtctccgcGGCCCAGCCTTACGTTCTGTGTGAAGACGTACGAGCGCCTCTTCTTCCTGGTGGCACCCAGCGCCGAGGCCATGAGGATCTGGATGGACGTCATTGTCACAGCAACAGACGAGCACAGCCGCTACTGACCTTGACTTTACACCTGTCCCCTTTCCTGTGTCTGTCTGACCTCCCCCTTGGACTGAACCTCCATTCACCTGGCTGATCTGGCTAACCTGGCTACAGTTTCAGCAGTTTACATTATGTGGGGAAAACTGCAATCTTCAACCTCCACCCTCCAATGCGTGTAGGACCCCAGCAAGACTGCCATTTTGCTGCCTGAACTTTACGTCACATGAGTGGTGGAGGTGAGGAGTGACGAGCAGAACATAACGTTCAGGAAAGCTCTTCCTGAAGGAACTGACATTTGATTCTGGATAGTTTCTTAGGAGCTTTGATGACATGGGACTGAGTGGCAGACTGTTACAGGTTCTGTGTGGAACAAGAGACATTTGGAGGAGGGACAAGGCCATGGGAATATAAAGACGTGGAAGTGCAAGCTGGAGCAACCATTTGACATCTTAGAGTCAGTGCCAACCATGATATACTGACAGACAAACCTAATGTCTTTTTATTAGTCTCAAATCAGGATTTAATGGTTGGTGTCTCTCTAGCAGCTGTGTTTGAGCTCCCTCTTGTGGCCAGATTAAAGTATTGAAGTACTACAGCTTCCATTGAAATatgcaggtaactgccaaaataatggaaacaccagCATAGTGTGTCTTAATAGGTCGTTGTGCCACCACGAGCAAGAACAGCTTTAATGCACCTTGGCATGGATTCTGCAATGGTTTGGAATTCTATTGgggggatgcgacaccattcttccataaGAAATTTGATAATTTTGTGTTTTGTTtgatggtggaaaacgctgtctcaggctccgctccagaatctctcataagtgttcaattggcttgagatctggtgactgagttGAAAATGGCTTTACATCGTATTAATGCTCATCAAATCATTCAGTGACccctcgtgccctgtggatgggggcattgtcatcttATGGTGGCATAGCCATGGGAGAAAAAATAAATAGACAAAATTATGGCCAGctcagcatttttatacatgaccctaagcatgatgggatatcAATTGTTTCATTAACTCAgggaccacacctgtgtggaagcacctgctttcaacatACTTTGTATCCTCATtaactcaagtgtttccattcttttggcagttacctgtacatgtaTGTCTGTATTGAACATTGGTATATTTATCATCTGTCAAAAGGGCTGTTCATAGTCAATCAAAACACTGAACGATCGTTCAGTTCTTAAAAttgattgtttttgttgttgttttattttacaatataaacacagaaatactatGCTTATAAATATGTATTATTAatattgtcattattattatgatcattaAAGGTTTTTCATACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU274907 lncRNA downstream 20314 27050252 ~ 27050600 (-) True LOC110516606
TU274916 lncRNA downstream 69399 27001069 ~ 27001515 (-) True G240559
TU274999 lncRNA downstream 73509 26997060 ~ 26997405 (-) True G240632
TU274914 lncRNA downstream 76644 26992467 ~ 26994270 (-) True G240557
TU274997 lncRNA downstream 89147 26981410 ~ 26981767 (-) True G240630
TU275033 lncRNA upstream 8787 27106014 ~ 27106764 (-) True G240665
TU275056 lncRNA upstream 57552 27154779 ~ 27155085 (-) False LOC110516678
TU275057 lncRNA upstream 57608 27154835 ~ 27155496 (-) False LOC110516678
TU275058 lncRNA upstream 57933 27155160 ~ 27155496 (-) False LOC110516678
TU275061 lncRNA upstream 63591 27160818 ~ 27161025 (-) True G240688
XM_036973698.1 mRNA downstream 6442 27053769 ~ 27064472 (-) False LOC110516606
XM_036973697.1 mRNA downstream 6458 27049992 ~ 27064456 (-) False LOC110516606
XM_036973696.1 mRNA downstream 6459 27049992 ~ 27064455 (-) False LOC110516606
XM_021595003.2 mRNA downstream 6459 27049993 ~ 27064455 (-) False LOC110516606
XM_021595000.2 mRNA downstream 6460 27049993 ~ 27064454 (-) False LOC110516606
XM_036973701.1 mRNA upstream 1313 27098540 ~ 27103054 (-) True LOC110516644
XM_036973704.1 mRNA upstream 13857 27111084 ~ 27127488 (-) False LOC110516667
XM_021595034.2 mRNA upstream 30872 27128099 ~ 27151658 (-) False LOC110516655
XM_036973703.1 mRNA upstream 30872 27128099 ~ 27151658 (-) True LOC110516655
XM_036973705.1 mRNA upstream 57453 27154680 ~ 27159987 (-) False LOC110516678
TU274804 other downstream 395881 26674592 ~ 26675033 (-) True G240464
TU274740 other downstream 501392 26569101 ~ 26569522 (-) True G240409
TU273578 other downstream 1246157 25823356 ~ 25824757 (-) True LOC110515750
TU272614 other downstream 1834547 25199088 ~ 25236367 (-) True LOC110515384
TU272445 other downstream 2123909 24937629 ~ 24947005 (-) True LOC110515208
TU274911 other upstream 14955 27112182 ~ 27112622 (-) True LOC110516667
TU275055 other upstream 58341 27155568 ~ 27158664 (-) True LOC110516678
TU275290 other upstream 87433 27184660 ~ 27185105 (-) True G240906
TU276496 other upstream 1157930 28255157 ~ 28256509 (-) False G242021
TU276553 other upstream 1178545 28275772 ~ 28280045 (-) True LOC110517114

Expression Profile