RNA id: XM_036973701.1


Basic Information

Item Value
RNA id XM_036973701.1
length 1547
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC110516644
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 27098540 ~ 27103054 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gTTGAAAGTGTTGACATCTTGCACATGTCCACTGCTCTTGTTTAGTGCTTGGAGGTTCGCGAGGAGTAAGCTCCCCTTATCAGATTTTTTGGACTTCCTGGCTACATGCACAATAAGTCAGTATAGCTACAACATTTGTGCCTACCATGCTAATTTTGTTTTAGGCTATAGCCAAATATACTGCAAAGGCAACGGACCTCTACAAAGGATTGGGACACAAACTCGTTGGCTCAGTTCTGGGATTTCTACCCTGCCCGTCGCAGTGTCAGTTAAATCTCCTTGGAGAAAAAATGTGTTCAATTGTAAACCGACTGAAACCTGCTCTGGCCTACACGCTGCGCCTCCAAACAACCGGGCACTTGCGTAAAGTTCCAGCCCACATGGGCCCGGGCTTACGCACCAGCaagcagcctctggaatcagtcaTCATACGACCTTACTGCGCCAGGATGGAGTTGGGAAAAGGGCCTTTCTTCAGGCAGCTTTTTGAGTCGGTGAGCAGCACCTACACCTATCTGCTGGCTGATACAGAGAGCAGGGAGGCAGTCCTCATTGATCCCGTACTGGAGACAGTGGACAGGGATCTGAAACTCATAGAGGAACTGGGTTTCAACCTGAAAGTTGCAGTGAACACTCACTGCCATGCAGACCACATCACAGGCACGGGACAGCTGAAGAACAGGCTGTTTGGGATGAAGAGTGCCATCTCCAAGCACAGCGGGGCCAGTGCAGACATCCTGCTATCAGAGGGAGATAAGATCAGCTTTGGCAAACATTGTCTGACGGTGAGGGAGACTCCAGGACACACAGACGGCTGTGTGACGTTGGTGACAGGGGACCAGAGCATGGCTTTCACTGGGGACACACTGCTAATCAGGGGCTGTGGAAGGACAGACTTCCAGCAGGGCTGCTCTAGGAGGCTCTATGAATCAGTCCACCAGAAGATCTTTACATTACCTCCTCAGTGTCTCGTCTTCCCTGCACATGACTACAAAGGTCAGACGGCCTCCACAGTGGGCGAGGAGAGGAGGTTTAACCCCCGCCTGACCAAGAGCGTGGAGGAGTTTGTGGATATCATGACCAACCTGAACCTCCCCAAGCCTGCTAAGATAGATATTGCGGTGCCTGCAAACCTGGTGTGTGGACTCCATGAGGTTTGAATGTCAAATCGATTTTTAGGATTTCACTTTAAGCACTATTGGGAGGAAGAGGGAAATTCTTTTCACCCGCCCACAACTTCATGTTTTAAATGCAATATTTTGTATCTAAGAAGTAACCAAAACTAAAGTTTGTCAAAAAATCTAAGAATGTATATATTTCATTTCCAATATGAACATAAATTCCTCCTTGTTTGCCTATGAAAAAAAGCAGTGTTCATGATTTGGTGGGTGTACAGATACTGAAATTGTATAGTAGAAGATGCATTCAAATACATGATCATAAAACATACCCATGTACATTGTGACATTTCTAATACAATCTCCTGGAGAAATGTGAACAGTAAAATGACCTAGTTTTATATTAAATCAAAATTGTTCAAATGTAAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K17725 ETHE1; sulfur dioxygenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU275020 lncRNA downstream 21794 27076248 ~ 27076746 (-) False LOC110516631
TU274907 lncRNA downstream 47940 27050252 ~ 27050600 (-) True LOC110516606
TU274916 lncRNA downstream 97025 27001069 ~ 27001515 (-) True G240559
TU274999 lncRNA downstream 101135 26997060 ~ 26997405 (-) True G240632
TU274914 lncRNA downstream 104270 26992467 ~ 26994270 (-) True G240557
TU275033 lncRNA upstream 2960 27106014 ~ 27106764 (-) True G240665
TU275056 lncRNA upstream 51725 27154779 ~ 27155085 (-) False LOC110516678
TU275057 lncRNA upstream 51781 27154835 ~ 27155496 (-) False LOC110516678
TU275058 lncRNA upstream 52106 27155160 ~ 27155496 (-) False LOC110516678
TU275061 lncRNA upstream 57764 27160818 ~ 27161025 (-) True G240688
XM_036973700.1 mRNA downstream 1281 27070914 ~ 27097259 (-) False LOC110516631
XM_036973699.1 mRNA downstream 1313 27070914 ~ 27097227 (-) False LOC110516631
XM_036973698.1 mRNA downstream 34068 27053769 ~ 27064472 (-) False LOC110516606
XM_036973697.1 mRNA downstream 34084 27049992 ~ 27064456 (-) False LOC110516606
XM_036973696.1 mRNA downstream 34085 27049992 ~ 27064455 (-) False LOC110516606
XM_036973704.1 mRNA upstream 8030 27111084 ~ 27127488 (-) False LOC110516667
XM_021595034.2 mRNA upstream 25045 27128099 ~ 27151658 (-) False LOC110516655
XM_036973703.1 mRNA upstream 25045 27128099 ~ 27151658 (-) True LOC110516655
XM_036973705.1 mRNA upstream 51626 27154680 ~ 27159987 (-) False LOC110516678
XM_021595082.2 mRNA upstream 103061 27206115 ~ 27211770 (-) True lim2.5
TU275019 other downstream 13480 27084340 ~ 27085060 (-) True LOC110516631
TU275018 other downstream 18596 27078039 ~ 27079944 (-) False LOC110516631
TU275014 other downstream 22657 27071055 ~ 27075883 (-) False LOC110516631
TU274804 other downstream 423507 26674592 ~ 26675033 (-) True G240464
TU274740 other downstream 529018 26569101 ~ 26569522 (-) True G240409
TU274911 other upstream 9128 27112182 ~ 27112622 (-) True LOC110516667
TU275055 other upstream 52514 27155568 ~ 27158664 (-) True LOC110516678
TU275290 other upstream 81606 27184660 ~ 27185105 (-) True G240906
TU276496 other upstream 1152103 28255157 ~ 28256509 (-) False G242021
TU276553 other upstream 1172718 28275772 ~ 28280045 (-) True LOC110517114

Expression Profile