RNA id: XM_036973704.1


Basic Information

Item Value
RNA id XM_036973704.1
length 4575
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC110516667
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 27111084 ~ 27127488 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGACTATTTCTTAGTCAAATATCGACATTTTATAGCTATATGGCTACATTCTGATGTACATTGAGTATCATACCAGTcaagtggggcggcagggtagcctagtggttagagcgttggactagtaaccggaaggttgcaagttcaaacccccaagctgacaaggtacaaatctgtcgttctgcccctgaacaggcagttaacccactgttcctaggctgtcattgaaaataagaatttgttcttaactgtcttgcctagttaaataaaggttaaaaaaaataagattTAAAAAAAGTATTCCTGTTAGTGAGTTGTGCGTTACACAATCTTTTTTTATCAAGCTCTACTGTACTTCCTCAAGTTGTCAATGTGTAGGCTGTACCATTGTCTGGACCATTGTCTGTACCTTATTCACAGTCTCTAAGCATAGGAATGGTGTAAGCATTGGCTGGAAGGAGTTTACCCCATTGTGAAGTCCATGCGAGAAAGTGTGTGCATTGGCTATGTCCCGATTCTCCACTTTTTTCCAGAAGTGTACACTTGCACACTCCCTGTCACAGATTATAACGCATAGGAATGGTGTAAGCATTGGCTGGAAGGAGTTTACCCCATTGTGAAGTCCATGCGAGAAAGTGTGTGCACACTTTGGAAGAACGGTAAATAATTGGGTCTCAGCTATACTGTGTAGATCACATTATGCTCCCAGTGAGGGGCACCGGTGAGAGCTTTGTGCATGGAACAAATCAGCAGTCATGATCATTTTAAGTGAGTCATTTACTGAGATACTGTAAATGGATGAAGGGGTTTTGATTTGTACCTAATTTGTTCAAAGTTCAAGTAGCAGAGAAGCATGATAGACACAGAGAGGCTTAAAGGTCTGCTTCATTGGAGATAGTGTGCTGTCTTATCTTAACTTCTAAggcaggggtaggcaactagattcagccgcagaCCCACTTTTGTCAGAGATGACGGACTGGGGCCTGCAAAATAATTcatacactgcaaattgaccaagTAAGCCCAAAATATATCTTTTAAAATAAAGACAcaatcacatactgtatgtctatctttttatttgtgggaatacttgggaacagatttccattATTTTTAGAGGAATTCCTGCAGATTATAGTccttttttttacaaaaaactgAGAGGCCAAAATAAATGACGACTCGTCTGTTTGTACGATGAAAAACAACCTGAGTGAATAGCTGGCTTCATTCAGTACTTCACTGAACTATCTGTTATAATTAGGAGATATAATTCTTACTCTCACTGTGTTTTGAAGTGAGTTAAATGACATTGCCTATCGCATACTGCCTGCCCTCACCCATTGCTATCCCCGTGTATGCTTTAATGAAGCATATACATTTTCCCTTCGAATTGTCTTCCCCGTCTCATTTCTCTGATCTGGTTCTACTCATTGCGAGCGCTGCCAAACGTATATGGATGATTTTAATTTGTCGCACAATTAGAGAGCTTTTTACCCACTCGGTTCATTTGTTTTCATCTGTTTTTTTTCTGAATAGGTTTCAAGACAAGTGAGCGTCTCGTCTCCTAAAGAGagtgcacgcacgcgcacacacacacacacactgctcactgGATCTGATCCTAGGAACCACCaacgagagaggagggggggaaagagagagggagagtaccGCTAAATCACTTGGAGGAACGGACAGAGTGTGAAAACCAGAGCGAGGTGGAGAGAAGGGATTTACTGCTGAAGCACTCATTGAGGTGTAGAGGGAGTGAGTGTGTTGCATGTTATAGAGGTTGAGGTGTGAGCTCTGACAGGAGAAGGGTTAGCAGGCTCAGAGCACACTGAGTGGTGACTGACTGATTCACTCTACTGTCATTTTCCATTTTCTGCTTATTCAGAGtgagtagtgagtgcatacattgtcATACTGTCTGCTGTCTATTGCAGTTCTCTGTTCGGAGGGTATGGGACTGACTACCACTACAGCCGAGTGAGGactgttccagactctctctgTCCAGAGGAGCATGATGACTACTTTCCCCAATGAGACAggcttctcctccctctctccatcatactccctctcctctcccacaccGTCCCTCACCTCCAAccctttctcttccttctccctctctacctcctcctcctctccgtccAACTGCTCCAGCTCTCCGttgctctcctcccctccctataACTTCTACGctgtgctgctggtgctgctcATCTTTTGTGTGGTGTTTGGCAACGTGCTAGTTTGTGTGGCGGTGTCGCGCGAGCGTGCCCTCCAGACTACCACCAACTACCTCATTGTCTCCCTGGCCGTGTCTGACCTGCTGCTGGCCATCCTGGTCATGCCCTGGGGCGTCTacctggagGTGGTAGGGGAGTGGCGCTTCAGTCTCATCCACTGTGACATCCTCCTGACCCTGGACGTCATGATGTGTACTGCCAGCATCCTCAACCTCTGTGCCATCAGCATTGACAGgtacaTGGCGGTGGCGATGCCCATGCTGTATAACACCAGATACAGCTCCAGGAGGAGGGTGGCTCTGATGATTGCTGTTGTGTGGTTCCTCTCCTTCGCCATCTCCAGCCCTCTGCTATTTGGACTCAACAACACAgCCAGTCGGGAGGAGACCAAGTGTGCCTTCGCTGACCCGTCTTTCGTGGTCTACTCATCCGTGGCCTCCTTCTACGTTCCGTTCATCGTGACCCTGCTGGTGTACGCCCAGATCTGTGTGGTGCTGCGGAGGCGGGGCCGACGCACCATGCCCCGCAGACACGGCCTGCACCCACAGGGAGGAGGCAAGACTGGGGAGGGCCACAGGCACAGGAAGAATAAGTCTACCCTCCCTGAGGATGTGAAGCTGTGCACTCTGATCACGAGGCCCCCCACCACCGCCCCCCAACGCAAGAAAGTGACGTTAGTGAAGGAGGCAGTGGTGCACCCCCTGGAGGAGGAGCCGTTGGGGTGTGGTTTCCTGTCCCAGTTAGACCAGAGCCTCCCCCCACCTCACCCTTCTCACCGCCCTCCCCCCTCCGGACGAGCCACCAAGatctccctttctatctctgtGGTACCCGCGCCCTTCCCGTCACCGTCGGTGGCACCACGCTCCACCCTCGTACCCCGCCGTGCCACCTTCGAGGATGGCATGAGTGGCCGCGAGCGATGGAGGGAGCGCAATGCAGACAGGGAGAAGGGAgcgatggagaaggagagggtgaaaGGGACTCTGTCGCAGCAGAAGGAGAGGAAGGCGACCCAGATGCTGGCTATTGTGCTAGGTGTGTTCATCATCTGCTGGCTGCCCTTCTTCCTGACCCACGTGCTGAAGGCCCACTGTGGCAGCTGCTGTATCGCCCCCTCCCTGTACAGTGCTGTCACCTGGCTGGGATACCTCAACAGTGCCGTCAACCCCGTCATCTACACCACCTTCAACATCGAGTTCCGCAAGGCCTTCATCAAGATCCTAAACTGCTGAGTACAGGGAGgaaggggatggggggagagtgggagaaagTGTGAAAAGTGTAGAGGGGCAAAAAAAAGGTCAGAGACTTGAAATAAAACTaaagaagggaaagagaggggtgaAAACAAAGACCAGAAGGgaatggaaggagagatggaggggaagggggggacagagagagagagagtcaacagaATATTTCAAACAAAGCCCCCCAAAAATTGAACAGGTCAAACAGAAGAGCAAGTGAAGCAAGACCGATATACCAAATCAAAACAGACTTGGGAATTATAAAGGGGTTATGTACACTTCTGTAAATCTAAAACATAGCAGGGAGAGAGTAATATTCTGAAGGTTCTATGGGATGGGGTAGGGCACAAACAGTGGCAGAAGACTGTCCCACTCCTTTTGGGGATGACTAAGTAAGTGTATTACTCTCTGATACCCCTCTGAAGTATACTGTCTGCAGACATTGTCATTTAATTAACAGAGTTAAAACAGGACAGAGGTAATATTTTAAGGAGATACACAATAAATCTGCACAATTGTTCTCCAATAGCAGTCTTGTTGCGTCGTCCCAGTGTAAACATGCCTGTAagagatgtattatattaagaaTATGTTGGTGAAGATATGATGCcataataacatggtgatatgaTGCAATATGATAAGCGACTAATCAAGGTTTGTTCATGAGGTGTATGTATATATTGTTGTTTAGAGTGTGAGCTCTAAATATCTGTATTAGTGTTATTGTACAGATAAATGTAATAAATGATGTTCTACTCATATTGCTAGTCTGTCAAGTTTTCTGTactgcagggttggggtcaatttgaaTTGAAGTCAGTCAATTCTGGAAGTAAAGATATTTTCCAATTGATTAATAACGCAGAAAAAAGGTGTTTTCATTGACAACTTAATCTATGTTTTGGATTTTAAATTCAGATCACTTCCTTAATTGACTGACTTCAATTcaaattgaccccagccctgcaTTACTGTACTGGTCCAACAATGGACAGAAATGGATTAATTGACTAACTTGTTTTCAAAACTGTTTAAATACATTTGCTCTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU275033 lncRNA downstream 4320 27106014 ~ 27106764 (-) True G240665
TU275020 lncRNA downstream 34338 27076248 ~ 27076746 (-) False LOC110516631
TU274907 lncRNA downstream 60484 27050252 ~ 27050600 (-) True LOC110516606
TU274916 lncRNA downstream 109569 27001069 ~ 27001515 (-) True G240559
TU274999 lncRNA downstream 113679 26997060 ~ 26997405 (-) True G240632
TU275056 lncRNA upstream 27291 27154779 ~ 27155085 (-) False LOC110516678
TU275057 lncRNA upstream 27347 27154835 ~ 27155496 (-) False LOC110516678
TU275058 lncRNA upstream 27672 27155160 ~ 27155496 (-) False LOC110516678
TU275061 lncRNA upstream 33330 27160818 ~ 27161025 (-) True G240688
TU275063 lncRNA upstream 35033 27162521 ~ 27162854 (-) True G240690
XM_036973701.1 mRNA downstream 8030 27098540 ~ 27103054 (-) True LOC110516644
XM_036973700.1 mRNA downstream 13825 27070914 ~ 27097259 (-) False LOC110516631
XM_036973699.1 mRNA downstream 13857 27070914 ~ 27097227 (-) False LOC110516631
XM_036973698.1 mRNA downstream 46612 27053769 ~ 27064472 (-) False LOC110516606
XM_021595003.2 mRNA downstream 46629 27049993 ~ 27064455 (-) False LOC110516606
XM_021595034.2 mRNA upstream 611 27128099 ~ 27151658 (-) False LOC110516655
XM_036973703.1 mRNA upstream 611 27128099 ~ 27151658 (-) True LOC110516655
XM_036973705.1 mRNA upstream 27192 27154680 ~ 27159987 (-) False LOC110516678
XM_021595082.2 mRNA upstream 78627 27206115 ~ 27211770 (-) True lim2.5
XM_036973715.1 mRNA upstream 84701 27212189 ~ 27217527 (-) False LOC110516735
TU275019 other downstream 26024 27084340 ~ 27085060 (-) True LOC110516631
TU275018 other downstream 31140 27078039 ~ 27079944 (-) False LOC110516631
TU275014 other downstream 35201 27071055 ~ 27075883 (-) False LOC110516631
TU274804 other downstream 436051 26674592 ~ 26675033 (-) True G240464
TU274740 other downstream 541562 26569101 ~ 26569522 (-) True G240409
TU275055 other upstream 28080 27155568 ~ 27158664 (-) True LOC110516678
TU275290 other upstream 57172 27184660 ~ 27185105 (-) True G240906
TU276496 other upstream 1127669 28255157 ~ 28256509 (-) False G242021
TU276553 other upstream 1148284 28275772 ~ 28280045 (-) True LOC110517114
TU276998 other upstream 1591966 28719454 ~ 28725203 (-) True LOC110517222

Expression Profile