RNA id: XM_021595034.2


Basic Information

Item Value
RNA id XM_021595034.2
length 3215
RNA type mRNA
GC content 0.48
exon number 17
gene id LOC110516655
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 27128099 ~ 27151658 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAAATAAAATATCAACCGGAAGTTACATTGGAGGTTGTGAATTGAGAGGGATTTGGTGAAATTCAGTGGTCACGGTTCAATCTTCAAATACATTCCGGGTGTTTCTGTCCGCCTTCACATGATAATAAAATTCACAGGGAAGTAAAATACAATATATTAAATACAGAAATGTTAAACAGTGTACTTCTATGGAGCATTAGAGGTGTTTTGTTTGCTATAAACTAGCCATGAACGTGTTCCATTGTTTGCTAACTAGCTGAAAGCGTAGAGCTGTTCATTAGCTGAAAAAAACACAAATAATGCGGCATTACTTTTTTGACAAGTCAAGTGACTAGCGCAAAATGCCGGAGATAAAACTCATGCACATCGTGTCTTGCAGCACTGAAGACAATACTCACAAGGCTGACAACCTGCTGAGCTCGGACACATATAGAAAATGGAAAGCAGCAAAGGCAGGGGAGAAACAAACCTCAGTCATTATACAGTTTGAGAAAGAAGAGCAGGTGTACAGCATAGACATAGGAAATGAAGGGTCTGCTTTTATTGAGGTGCTGGTGGGACACTCAACCTCTGTCAAAGACCAGGACTATGAGGTTCTGCTGGCCACGTCGTCCTTCATGTCCCCCACGGAGAGCCgtaacagcaccaacaccaaCCGTGTGCGCTTCTTTGGCCCTACCCAGCTGGTGAAGGCTCAGGCCCAGGAGAAGTGGGACCGCGTGAAGATTGTGTGTAGCCAGCCGTACAACAAGAGCATAGCATACGGGGTGGCCTTCGTGAAGTTCCATTCACCATCAGAAAAAAGTGATCTACCAACCACACCAACACCGAAGTTGACGAAACTTGGCCAGTTTCGGGTGAAGGATGAGGCCCCCTCGGCTTGCCCTAGTCTTCAGCCAGGCAGCCTCTTCTTCAACAGAGAGAGCACCTCCAAAGGCAGCCCAGCGCTCAAGGTTTCGCCACAGACTGAGAAGCTCAGCTATGCATCTGCCGCCCTGcagtctgggtctgggtctgggtctggccACTCCTCAGCCCCACCGTCTTCCAGCTCTCCCCCACCACAGGCACCAGTGAAGAGGAAGTTTGAGTTCAGTAAAGAGCGCCGGTCTGCTCTAGCTCCGCCCCCCTCAAAGAAACCCAGCCCTATGGGCTCCCCTGAACTGGGCACTACCACCCCGAAACCCAAGGTGAAACCCAGCACAGCCAGTACTCCCAGCCCCAGCACTGACAAAGCCTCCCCTGCGCAGAATACCCCAGACACTAAGAAGAAGGAGAGCCTGCCCAAACCAGAAGCCAAGTCCAGACCCAAACCCTCCAAAGCCCAGTCCAGCTCCTCTGATGCCCCTGTTCCCATCAACAAGATCATGGAGGGGGTGGTGTTTGTGCTGAGCGGCTTCCAGAACCCCTTCCGGGGGGACCTGAGGGACAAGGCCCTGGCCATGGGGGCCAAGTACCACTCTGACTGGACCCCTGACGCCACACACCTCATCTGTGCCTTCTCCAACACCCCCAAGTACAGCCAGGTGAAGTCAGCAGGGGGCGTCATCGTCCGGAAGGAGTGGGTGCTGGACTGTCACAAGAGGAAGCAGAAGATCTCCTTCAAACAGTACCTGATGGACGGAGCGGAGTCCAGCTCGGAGGGGAGCGACGATGAGAGtgaggaggaaaaagagaggaggACTCCACAAAAGAGGAGAAAAGAAGAACGGCAACCCACTCCCAGAAAGACCCCCAtcaagaaagaggaggaggatctgTATGGTGTTTCCACAGACGCAGATGAACCAGAAGATGAGACTGGCATGGACACGGGGGATGAGCTGAAGAGGGTGGAGAGCGAGAATCGGcagaagaaaggagagaaggagagaaaaggagtggaggaggaggacccTTTTGGAGGGTCGACTGACGAGAACACTGACGCTGAGGCCGATGAGGACGAGCCCATCCCTGAGCTACcagATTTCCTAACTGGAAAGCGATTTTTCCTTTACGGCAAGTTCCCCAACAATGACAGACGCCTACTCCTGCGTTACATCATCGCCTTCAACGGgGCGGTGGAGGACTACATGAGTGAGAAGGTCCAGTTTGTTGTCACCAGCGAGGGATGGCACGACTCCTTTGAAGACGCGCTGATGGAGAATGGTAATTTAAGCTTTGTCAAACCCACATGGATTTTTGCCATCAACGATCGACAGAAGACGCTGCCATATCAGCCCTACACTGTTGTCCCTTGAGACTTGCATTTGCCAacgtgctcacacacacaaacacacacacaacagtattGTACCTGTCCAAAGGGTAGGAGAGGTGTACATTGAAGCCATAGACATTAGCTCTTCTCAGATCCCTAGGTAAATGAAACCAAGCAACGTGCCATTTTGGTACAAACTTTACTTGAGACCATCCAGAGAGATGGATGAAATGGTTTCCCTACCAGAGATGGCATATCTTCAAAGACTTATCAGCACCGGTGCACAAGAATAACTCTCCTATCTGTCTCGCTTTCAGGGCTTTTTATAACAACATATCTCTGCTTCACCTCCACTACCTCAGGGTCCATGTCGAAACTCCAGTTATCATGTCCTGAAAAGCCACTGGCTTTGATAGAGGGGAGTGTATGAGTGTTAGGAGCAACATAAAGAGACCTAGGTGTAGccggaatggcaccctattctctataaagagccctatgggcccttgtcaaaagtagtgcactacatagggaatagggtgccgtttacAGGCGTAAAGGTGTTTGTTAGTTATTTAAGGTCACTGACAATCGAGGCCAATGACCACGAAATATGAATAGAAAAGAAGGCCTTTGTCCTTGTTGCTATGTAGGAATATGAAATAGGCTTCAAGGATTGGTTGGTATTCCTCTCATCTTACTATTTTATTTTTCAGCAAGTCCGCTTTGGGCAAATGCATGGGATTGTAGTGTAATTTGTAGCATGTAGAATTACGTGTACTTTTGTTTTATTCATGTTGTATGCTTTTTGAATTGTAAACAGAAACTATTGTGTGAGGATCCAATAAGTCCTGTTtttgcttgtttgttttttgtaAGTATGTGATATGTGTTCACATCATCCTTATTTTTCCTGTCTGGATTCGACTTGTTTATTACAGCATCTTAGCTTTGCTTTCAGATTCTTCCCCCCCAAAATAAATATTTGATTAATTAAAATAATGGATTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU275033 lncRNA downstream 21335 27106014 ~ 27106764 (-) True G240665
TU275020 lncRNA downstream 51353 27076248 ~ 27076746 (-) False LOC110516631
TU274907 lncRNA downstream 77499 27050252 ~ 27050600 (-) True LOC110516606
TU274916 lncRNA downstream 126584 27001069 ~ 27001515 (-) True G240559
TU274999 lncRNA downstream 130694 26997060 ~ 26997405 (-) True G240632
TU275056 lncRNA upstream 3121 27154779 ~ 27155085 (-) False LOC110516678
TU275057 lncRNA upstream 3177 27154835 ~ 27155496 (-) False LOC110516678
TU275058 lncRNA upstream 3502 27155160 ~ 27155496 (-) False LOC110516678
TU275061 lncRNA upstream 9160 27160818 ~ 27161025 (-) True G240688
TU275063 lncRNA upstream 10863 27162521 ~ 27162854 (-) True G240690
XM_036973704.1 mRNA downstream 611 27111084 ~ 27127488 (-) False LOC110516667
XM_036973701.1 mRNA downstream 25045 27098540 ~ 27103054 (-) True LOC110516644
XM_036973700.1 mRNA downstream 30840 27070914 ~ 27097259 (-) False LOC110516631
XM_036973699.1 mRNA downstream 30872 27070914 ~ 27097227 (-) False LOC110516631
XM_036973698.1 mRNA downstream 63627 27053769 ~ 27064472 (-) False LOC110516606
XM_036973705.1 mRNA upstream 3022 27154680 ~ 27159987 (-) False LOC110516678
XM_021595082.2 mRNA upstream 54457 27206115 ~ 27211770 (-) True lim2.5
XM_036973715.1 mRNA upstream 60531 27212189 ~ 27217527 (-) False LOC110516735
XM_036973719.1 mRNA upstream 60531 27212189 ~ 27217527 (-) False LOC110516735
XM_021595089.2 mRNA upstream 60531 27212189 ~ 27217984 (-) False LOC110516735
TU274911 other downstream 15477 27112182 ~ 27112622 (-) True LOC110516667
TU275019 other downstream 43039 27084340 ~ 27085060 (-) True LOC110516631
TU275018 other downstream 48155 27078039 ~ 27079944 (-) False LOC110516631
TU275014 other downstream 52216 27071055 ~ 27075883 (-) False LOC110516631
TU274804 other downstream 453066 26674592 ~ 26675033 (-) True G240464
TU275055 other upstream 3910 27155568 ~ 27158664 (-) True LOC110516678
TU275290 other upstream 33002 27184660 ~ 27185105 (-) True G240906
TU276496 other upstream 1103499 28255157 ~ 28256509 (-) False G242021
TU276553 other upstream 1124114 28275772 ~ 28280045 (-) True LOC110517114
TU276998 other upstream 1567796 28719454 ~ 28725203 (-) True LOC110517222

Expression Profile