RNA id: TU275057


Basic Information

Item Value
RNA id TU275057
length 662
lncRNA type sense_over
GC content 0.37
exon number 1
gene id LOC110516678
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 27154680 ~ 27159987 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaggaggagagagtcaaGGGGGCACGGTGGACAGAGGAACAAGAGACAGACAAAGCCCTGCCTACAATGACAATAACACTGAAACAGCTATCTACTTGGAGATCATCTGAGTTCATCTCTCAGTGTGGTATGTCATGGATAGCTCTGGTCCAGATCATTAGCACTAATGGCTTGGATCAGCGTTATGTCATGGAGTGGAAGAGAGCTCTTACATTGTATAACAAGACAAGCATGAACATACTGCTTGACTGATAATGGCACAATGATATGGTATCCGCTTGATATAATTTTGCAtgattatacatacagtaccaagtAGTTATGTGGCACATTTAGATTATCCTTCTCTCCTttttaatgatatatatatatatatatatatatataacttttgtGTGCATAATTGTAGACTTAATATCCCTAGCTACTTCATCAGTGCATATACTTGAAGATAATGGTCCACACACATTATTCACCTATTTCATGCAGTACATTTAGCATCATTACACATATAATGTCTGTATAATGATATTCTAGATGGGATGAACAGGATTGTATGATGTAATGATGATAAAGGTGTTGGACACACCTCTCTTATAAAACAATCACTTTTGTATATGTTTTATATAAATGTGCCCTTCTTCACCTCCCAGCCTGACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU275033 lncRNA downstream 48071 27106014 ~ 27106764 (-) True G240665
TU275020 lncRNA downstream 78089 27076248 ~ 27076746 (-) False LOC110516631
TU274907 lncRNA downstream 104235 27050252 ~ 27050600 (-) True LOC110516606
TU274916 lncRNA downstream 153320 27001069 ~ 27001515 (-) True G240559
TU274999 lncRNA downstream 157430 26997060 ~ 26997405 (-) True G240632
TU275061 lncRNA upstream 5322 27160818 ~ 27161025 (-) True G240688
TU275063 lncRNA upstream 7025 27162521 ~ 27162854 (-) True G240690
TU275064 lncRNA upstream 7691 27163187 ~ 27163396 (-) True G240691
TU275067 lncRNA upstream 8993 27164489 ~ 27164800 (-) True G240694
TU275068 lncRNA upstream 9612 27165108 ~ 27165558 (-) True G240695
XM_021595034.2 mRNA downstream 3177 27128099 ~ 27151658 (-) False LOC110516655
XM_036973703.1 mRNA downstream 3177 27128099 ~ 27151658 (-) True LOC110516655
XM_036973704.1 mRNA downstream 27347 27111084 ~ 27127488 (-) False LOC110516667
XM_036973701.1 mRNA downstream 51781 27098540 ~ 27103054 (-) True LOC110516644
XM_036973700.1 mRNA downstream 57576 27070914 ~ 27097259 (-) False LOC110516631
XM_021595082.2 mRNA upstream 50619 27206115 ~ 27211770 (-) True lim2.5
XM_036973715.1 mRNA upstream 56693 27212189 ~ 27217527 (-) False LOC110516735
XM_036973719.1 mRNA upstream 56693 27212189 ~ 27217527 (-) False LOC110516735
XM_021595089.2 mRNA upstream 56693 27212189 ~ 27217984 (-) False LOC110516735
XM_036973718.1 mRNA upstream 56693 27212189 ~ 27222555 (-) False LOC110516735
TU274911 other downstream 42213 27112182 ~ 27112622 (-) True LOC110516667
TU275019 other downstream 69775 27084340 ~ 27085060 (-) True LOC110516631
TU275018 other downstream 74891 27078039 ~ 27079944 (-) False LOC110516631
TU275014 other downstream 78952 27071055 ~ 27075883 (-) False LOC110516631
TU274804 other downstream 479802 26674592 ~ 26675033 (-) True G240464
TU275055 other upstream 72 27155568 ~ 27158664 (-) True LOC110516678
TU275290 other upstream 29164 27184660 ~ 27185105 (-) True G240906
TU276496 other upstream 1099661 28255157 ~ 28256509 (-) False G242021
TU276553 other upstream 1120276 28275772 ~ 28280045 (-) True LOC110517114
TU276998 other upstream 1563958 28719454 ~ 28725203 (-) True LOC110517222

Expression Profile