RNA id: XM_021595075.2


Basic Information

Item Value
RNA id XM_021595075.2
length 1836
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC110516690
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 27185382 ~ 27195271 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGATGTGCAGTAGTGGTTTTCGCTTTATGACAGAGAACAGAGGGCCAACTCAGACAGACACGCTCACCACCTCCTCTGAAGCTATAAACGTCAGTATCCTAAGCATCACATGGTATCAGGACCCTAATAGACTAAAGACACCACGGACTCTAATGGACATCCTCAGCTTCATCACAGATAGAAAAGCTCCTGCGTTATCCATGCCGAATGCAATGGTGGATGGAGCCTTATTCCAGGCCAACTGTAGTGTCTGGCATTCCtgcccatcctctcctccatcccttcacTGGAGCCGCTTGCCTGTAAATTCTACAGCGGTGACGTCAATGGAGGAAAAGGGAGGGCTGTGGGTGTCCACTGAGACAATACAAGGAAGAGGAACGTGCCAACTGCACAAAAAAGAGATGAAATGCACAGCTCAATTCGCTACAGTCCAAACTGAGAGTCAACCAGTCATTCTTAACATCTCGTATGCCCCTGTAGGTGTGAAGATGATGGCGGATGAACAGCCAGTCAGTGAAGGTCATAGTGTCAATCTGGAGTGTGTTGCTGACAGCAACCCCCAGCCAGGCCTGTATGTGTGGATCAGACGACAGGGAGGCCAAAGCATCCAAACGAATTCCACTCAGGGAAAAATGTCCTATCCCAACATTAGCCGAGACTCTTCATTCTCCTGCATTGTCCAAAACAATATTGGATCAAGTCAGTCAGCCTGGCTGTTTCTGGATGTCAACTTCCCCCCAGCAATCCTCTCGGACTCCACTTGCTCCTTGAAGGGTGGgattctgacctgtgtgtgtagaGCAGAAGCCCGACCTAATGCCACTCTGCACTGGACGATCAGCGGAAGCAGCACTCTCCCATCCTCCTTCACTTCCATCACCATATACAGAGATAATACTGTGTCAGCAGAACTCACTGGGCCTGTGGAAAGTCGACCAAATGTCTCCTGCGTAGCCAGTAACTCACTGGCCACTGACATCCAGCAGCTGCCCCTTGACACAAAATTCACAGCTGGACAGTTTCTGCCATGGATGCTGACTGCTCTGGCAGTTGGAAGTGTCTTTCTGGGATGTGTAATGTTTGTATGCAGAAGACGTTGCAGAGAGAGACCAAAGGCCAGCTCTAATCTCCACACGTTGGATATCCCTCTAAGGCAAGGTGATATGTCAGAGTCCCTAAGGTACAGCAATCCCCAAAAACCACCGCAAAAGCCTGAGAGGACCAAGCCTAAGGCCATGCCCATGGCCATACCCAAGGAGAAAGCACAGGCGGATAGCCAATCGTCAGTCTACGAAAATGACTTTGTGCCAAAGAAGCCTAGTCAAAACCCAGCAAAGAACGACGAGAAGATCAAATTACAAGATAGCACAAAGGCTATGTGTTCAGACATGGATGATATTTACCAAAATTATTGAACTACCAGTGCACACAACGTTTGCTTCAGAGTACATAACAATAATGCTATCCAATTGTTATAATCTGACGATTGAGTCGTGTAGCCTACTGTTAAAAGTCTAAAGTTGTTGTGTTTGTGCACCTGTCTGGGCTGTGtggattgtgtttttttgtgtttaagTGATGAATGTAACCTATGTTTTGTATTGTAACTTTTGTATCAACTTAATTTGTGTGTCAAATTGCTTTTAAAAATGTGTTATGTGAACATAATTAtaactgaaataaaatacatacatGTTCACTTtttataccaaacattaggaaaagtttcctaatattgagatgaTGCACGGAACAGTTCAATTAgtctgggcatggactccacaaggtattccacagggatgctggcccatgttgactccagtgcttcccact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU274672 lncRNA upstream 7819 27177328 ~ 27177563 (+) True G240343
TU274669 lncRNA upstream 12152 27172583 ~ 27173230 (+) True G240340
TU274662 lncRNA upstream 20020 27165084 ~ 27165362 (+) True G240333
TU274661 lncRNA upstream 20394 27164550 ~ 27164988 (+) True G240332
TU274660 lncRNA upstream 20910 27163714 ~ 27164472 (+) True G240331
TU275088 lncRNA downstream 3952 27199223 ~ 27199435 (+) True LOC110504003
TU275090 lncRNA downstream 5865 27201136 ~ 27201473 (+) True G240716
TU275104 lncRNA downstream 21228 27216499 ~ 27216733 (+) True G240725
TU275131 lncRNA downstream 81263 27276534 ~ 27276743 (+) True G240752
TU275132 lncRNA downstream 81928 27277199 ~ 27278377 (+) True LOC100135935
XM_021584252.2 mRNA upstream 254 27183783 ~ 27185128 (+) True LOC110505196
XM_036973692.1 mRNA upstream 136706 27016458 ~ 27048676 (+) True si:dkey-24p1.1
XM_021584238.2 mRNA upstream 171155 27012977 ~ 27014227 (+) True irgq2
XM_021594983.2 mRNA upstream 174301 27004874 ~ 27011081 (+) False LOC110516537
LOC110504003 mRNA downstream 2598 27197869 ~ 27200027 (+) False LOC110504003
XM_021584265.2 mRNA downstream 8389 27203660 ~ 27205290 (+) True LOC110505200
XR_005039844.1 mRNA downstream 44068 27239339 ~ 27239905 (+) True LOC118944508
XM_021595128.2 mRNA downstream 45437 27240708 ~ 27264405 (+) False LOC110516767
XM_021595143.2 mRNA downstream 45437 27240708 ~ 27264405 (+) False LOC110516767
TU274539 other upstream 133428 27051186 ~ 27051954 (+) True G240244
TU273986 other upstream 857051 26327408 ~ 26328331 (+) False G239752
TU273987 other upstream 857357 26327408 ~ 26328025 (+) True G239752
TU273930 other upstream 965199 26213642 ~ 26220183 (+) True G239697
TU273162 other upstream 1643769 25540769 ~ 25541613 (+) True G239026
TU275097 other downstream 61317 27256588 ~ 27264393 (+) True LOC110516767
TU275557 other downstream 360901 27556172 ~ 27558532 (+) True G241150
TU275655 other downstream 519772 27715043 ~ 27723794 (+) True LOC110516984
TU275657 other downstream 552076 27747347 ~ 27749726 (+) False LOC110516993
TU277370 other downstream 1836440 29031711 ~ 29034714 (+) True LOC110517275

Expression Profile