RNA id: XM_021584265.2


Basic Information

Item Value
RNA id XM_021584265.2
length 1631
RNA type mRNA
GC content 0.46
exon number 1
gene id LOC110505200
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 27203660 ~ 27205290 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCTACAGCCAGGTAGGTTATGACCATTTGGAATTAAGAATGTGTTTTCCTTCTCCCTTTAAGGTTTTCACTGTTGAGCTGCAAGTGTACTGTGGGGAGGATGTAGCTATTAGCAGATTGGGATTCCTTCATTGGTAATAAGAAGTTGGCTGAGATAGTGTAACAAAAATACATTGAAAACAACCAAATTTGTATAATTTGAAAACATGATTATTGGGCACCCTGAATGTGTTCTTTTTGGATTTGTTTATCTTATCTCAAGGCCATGGTGTGGGTGAAAAGTGAGGTGATTCTGTCCGTCTACATCATCACTTTCCTGATTGGCCTGCCTGCCAACATCCTGGCACTCTACGCCTTCAGCATCAAGATCCACAAAAAGCCCACTCCCACAGACATCCTCCTGCTCAACCTGATCGTGTCCGACCTCCTCTTTCTTCTTTTCCTGCCTCTCAAGATGTACGAGGCGGCCTCCGGCATGCAGTGGTACCTGCCCGAGTTCCTCTGCTCCATCACTTCCTACACCTTCTTCTCCACTATCTACACCAGTTCTCTCCTGTTGATGGCTGTCAGTGTGGTCCGGTACCTGGCGGTTGCCTTCCCCATCACCTACCGCCAACTCAGCAAACCTTTCTATTCTGTGGTTTCCAGCACAATCATCTGGCTTCTCACCACTGCCCACTGCAGCATCGTGTTCATCATCCAGCACCACCAGGACCTCTCCCAAAGCAACACCTCCGTCTGCTATGAGAACTTTACCAAACAACAGCTGACCATCCTCCTCCCGGTGCGTCTGGAGTTCTTTGTCATGCTCTGCTTGGTTCCTCTCATGGTTTGCATCTTCTGCTACCTCCGCTGTATCTGGATCCTGTACATGCTCCCCAGGATCAGCCCGGGCCAGAAGCAGAAGGCCATCGGGATGGCGCTGGGTACTCTGGCCGTCTTCCTTGTGTGTGTCTTTCCCTACAACTTCTCCCATGTGCTGGGTTTCTTAACAGGGCACAGCCCCCCGTGGAGGTACTACACCCTGCTGCTCAGCGCCTTCAACACCTGCCTGGACCCTATCATCTtctacttctcctcctccaccttccgcATCACTATCAAGATGTCCATCTGCAAGATGCTGGGACTGCGACATGGTCAGGCTGCGATCCAAAGGGAAAGCACAATAGCCGATATTGGCCAAGAGTAGAAAATGTAGTCACCTTACTCCAAGTGCCCTTTGGGTAATTTTGTCAACAATAACTATTCATTTCACCAAATGTTTTAATTCTGTCATAGAGATCAAAcgttcaacttcataaaaaaacatgttttcccatctcaagatgTTCAATTAAGAAGAATAACTATGCAAATTCAAATTAAAGTGACAGGATTGACTGCAATAGGGTTAACaacatcttaaatcagccataactTCCTTTGTGACGGGGAATGGAAGCATTTCTAGTAACTTGttaaaaacatttctagcctatctatctatgggtaacacaGGGTTGATGGGTAATGCTTGACGCGCTCAGTTTCCCagcacaaaacaccagaaaatggcctaAAATAGaaagaaccagctcacctgcttttacacaaTGATATGGCTATATTACTAGATGGTACATTTTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU275090 lncRNA upstream 2187 27201136 ~ 27201473 (+) True G240716
TU275088 lncRNA upstream 4225 27199223 ~ 27199435 (+) True LOC110504003
TU274672 lncRNA upstream 26097 27177328 ~ 27177563 (+) True G240343
TU274669 lncRNA upstream 30430 27172583 ~ 27173230 (+) True G240340
TU274662 lncRNA upstream 38298 27165084 ~ 27165362 (+) True G240333
TU275104 lncRNA downstream 11209 27216499 ~ 27216733 (+) True G240725
TU275131 lncRNA downstream 71244 27276534 ~ 27276743 (+) True G240752
TU275132 lncRNA downstream 71909 27277199 ~ 27278377 (+) True LOC100135935
TU275143 lncRNA downstream 95434 27300724 ~ 27300923 (+) True G240764
TU275222 lncRNA downstream 218987 27424277 ~ 27424507 (+) True G240842
LOC110504003 mRNA upstream 3633 27197869 ~ 27200027 (+) False LOC110504003
XM_021595070.2 mRNA upstream 8389 27185382 ~ 27195271 (+) False LOC110516690
XM_021595075.2 mRNA upstream 8389 27185382 ~ 27195271 (+) True LOC110516690
XM_021595061.2 mRNA upstream 8391 27185382 ~ 27195269 (+) False LOC110516690
XM_021584252.2 mRNA upstream 18532 27183783 ~ 27185128 (+) True LOC110505196
XR_005039844.1 mRNA downstream 34049 27239339 ~ 27239905 (+) True LOC118944508
XM_021595128.2 mRNA downstream 35418 27240708 ~ 27264405 (+) False LOC110516767
XM_021595143.2 mRNA downstream 35418 27240708 ~ 27264405 (+) False LOC110516767
XM_021595122.2 mRNA downstream 35419 27240709 ~ 27264405 (+) False LOC110516767
XM_021595139.2 mRNA downstream 35419 27240709 ~ 27264405 (+) False LOC110516767
TU274539 other upstream 151706 27051186 ~ 27051954 (+) True G240244
TU273986 other upstream 875329 26327408 ~ 26328331 (+) False G239752
TU273987 other upstream 875635 26327408 ~ 26328025 (+) True G239752
TU273930 other upstream 983477 26213642 ~ 26220183 (+) True G239697
TU273162 other upstream 1662047 25540769 ~ 25541613 (+) True G239026
TU275097 other downstream 51298 27256588 ~ 27264393 (+) True LOC110516767
TU275557 other downstream 350882 27556172 ~ 27558532 (+) True G241150
TU275655 other downstream 509753 27715043 ~ 27723794 (+) True LOC110516984
TU275657 other downstream 542057 27747347 ~ 27749726 (+) False LOC110516993
TU277370 other downstream 1826421 29031711 ~ 29034714 (+) True LOC110517275

Expression Profile