RNA id: XM_021595082.2


Basic Information

Item Value
RNA id XM_021595082.2
length 1032
RNA type mRNA
GC content 0.51
exon number 5
gene id lim2.5
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 27206115 ~ 27211770 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCATGGTCGCTCAATGGGAAAGAGCCACGTGCCTCTGCGCCCACCAGCTCAAGAGCATTTGTTCTCGCTGATGGTTGCTGTAAAGGATTTGCCTCCATAGACAGAAAAGCGGAGCGGATAACTTTTTGGAATTCGGCCTAGGGGGTCCTCTTCGACCTTTTGCTCACTCCGggcttccactctctctctttctctctcagtctttCCCTGCGGAAAGGTTGACACTTAAGAGGGGTTATTTTTCCTGAAGAACTCAGTGCGTAGAGCCTCGCCACCGTCGCAGTGTCACTCAGGATGCACAGCTTTATGGGAGGGGGCCTGTTTTGCGCCATAGTGGGGAACATCCTGCTGGTGGTCTCAACTGCGACAGACTACTGGATGCAGTACCGCTTGTCGGGGAGCTTCGCCCACCAGGGCctgtggaggtactgcatgtCGGGCAAGTGCTACATGCAGACGGACAGCATCGCCTACTGGAATGCCACCCGTGCCTTCATGATCCTGTCAGCCATGTCGTGCTTCGCGGGCATCATCGCAGGCATTCTCTCCTTTGCCCATTTCTCCGCCTTCGAGAGGTTCAACCGCTCCTTCGCTGCAGGGATCATGTTCTTCGTCTCCACTCTCTTTGTTCTGCTTGCAATGGCCATCTACACTGGAGTGACGGTGAACTTCCTGGGGAAGCGCTTCGGTGACTGGCGCTTCTCTTGGTCCTACATACTGGGCTGGGTGGCACTGCTCATGACCTTCTTTGCAGGAATATTTTACATGTGTGCCTACAGAATGCATGAATGCAGGAGAGTGGTGGGCCCACGCTAAAAGAGAGAGGAAAGCCAGTGAAAAGATTGCAAATCCGGGACATTTTGGCCACACAATTCCAACACGATGAAAGAATCAAGCTTACACCAATAGACATATCACTGAAATATAGAAACAGTACTAGGTAATTGAGAACCAAAGATTAATACAAATGTTTGGTCATGCCTGAGCAGTTTACGTGTCATTTTAATAAAGCTATAACTCTAACAGTAAAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
K24190 LIM2; lens fiber membrane intrinsic protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU275069 lncRNA downstream 39834 27165801 ~ 27166281 (-) True G240696
TU275068 lncRNA downstream 40557 27165108 ~ 27165558 (-) True G240695
TU275067 lncRNA downstream 41315 27164489 ~ 27164800 (-) True G240694
TU275064 lncRNA downstream 42719 27163187 ~ 27163396 (-) True G240691
TU275063 lncRNA downstream 43261 27162521 ~ 27162854 (-) True G240690
TU275313 lncRNA upstream 3133 27214903 ~ 27215174 (-) True LOC110516735
TU275344 lncRNA upstream 65435 27277205 ~ 27278598 (-) False G240951
TU275345 lncRNA upstream 65435 27277205 ~ 27286809 (-) False G240951
TU275346 lncRNA upstream 65435 27277205 ~ 27285324 (-) True G240951
TU275355 lncRNA upstream 77525 27289295 ~ 27289513 (-) True G240960
XM_036973705.1 mRNA downstream 46128 27154680 ~ 27159987 (-) False LOC110516678
XM_021595034.2 mRNA downstream 54457 27128099 ~ 27151658 (-) False LOC110516655
XM_036973703.1 mRNA downstream 54457 27128099 ~ 27151658 (-) True LOC110516655
XM_036973704.1 mRNA downstream 78627 27111084 ~ 27127488 (-) False LOC110516667
XM_036973701.1 mRNA downstream 103061 27098540 ~ 27103054 (-) True LOC110516644
XM_036973715.1 mRNA upstream 419 27212189 ~ 27217527 (-) False LOC110516735
XM_036973719.1 mRNA upstream 419 27212189 ~ 27217527 (-) False LOC110516735
XM_021595089.2 mRNA upstream 419 27212189 ~ 27217984 (-) False LOC110516735
XM_036973718.1 mRNA upstream 419 27212189 ~ 27222555 (-) False LOC110516735
XM_036973716.1 mRNA upstream 419 27212189 ~ 27228503 (-) False LOC110516735
TU275290 other downstream 21010 27184660 ~ 27185105 (-) True G240906
TU275055 other downstream 47451 27155568 ~ 27158664 (-) True LOC110516678
TU274911 other downstream 93493 27112182 ~ 27112622 (-) True LOC110516667
TU275019 other downstream 121055 27084340 ~ 27085060 (-) True LOC110516631
TU275018 other downstream 126171 27078039 ~ 27079944 (-) False LOC110516631
TU276496 other upstream 1043387 28255157 ~ 28256509 (-) False G242021
TU276553 other upstream 1064002 28275772 ~ 28280045 (-) True LOC110517114
TU276998 other upstream 1507684 28719454 ~ 28725203 (-) True LOC110517222
TU277045 other upstream 1515200 28726970 ~ 28730375 (-) True G242539
TU277105 other upstream 1569830 28781600 ~ 28786278 (-) False LOC110517244

Expression Profile