RNA id: XM_021595089.2


Basic Information

Item Value
RNA id XM_021595089.2
length 2861
RNA type mRNA
GC content 0.52
exon number 11
gene id LOC110516735
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 27212189 ~ 27228503 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAAAATGATACTTTGTAATAGATTATGACCTTGAGGGACATTGCTACATGTCCTCCTGGGCTGCTCTTAAAGTTTGCCACGGCGCTCTTGGATGGTTATTTCTCCACTGACTTCTCCTAGAAGATGGTTGAGGTGTGGAAGGTGGCAACGTCGTGACCACTCTTGGGCATGAGAAGCAGAAGAAGATAGACGTCAAGGTCCCTTTAGTGTCATTTCCTAGAGCAACGGTCATCAGTGGGGAGACACGGACAGGACTACAGGAGGTAGACAGGAGGTGCATCAGTCATGATAACGCTCAGAAAACATGTGTTCCTCTGCTATACACTACGAGtggtgtggtgtgtgttggtagtggccGAGGAGTGGACCGTGACCATTCCTAATCAGATATCTGGCCTGAAGGGGTCTTGTATCCTCATCCCCTGTTCCTTCACACACCCCAGCACTTACATCCCCACTAATGTCACCTGGTACCAGTACTCCAAGCTGCCTGGTAAATACCCAGTCGTCTTCAGCCGCACCAAACCAGGGGATATCATAGAGCACTACAGTGGTAGAACTGAACTGGTGGGAAGGGCCTCTGATGGAGACTGCAGCCTGATGATCAATGGAATGATATTAGAGCATAACGGAGAGGACATTTACCCCTGGGTGGATGAGGTCAGCAAGTCTGTCTTTGCCTTCTTTCAGTGGAGGGTGACACTGGAGGTTACAGATACAGCACCAAGGCCACAGCTGTCGGTCAGTGAAGAGCAGAGGGAAGGGGGCAACATCACTGTTTCCTGTGCTGTCCTCCACACctgcccctcctcccctccctccctctctttcggGGACCAGAGGGGGGTGGTCCAGGGGTACCACACCGAGGAGATACAGGGTCGATGGCGCGTCCTCTCCACCATCTCGTTTGTGGCACGAGCAGAGGATCATGAGAAAGTGGTGGCGTGTAACGTGACACATCCAGGAGGCCAGACAGCTGCAGGGGAGGTGGTGCTCGACGTGAGCTatGCCCCCAGGTCTGTGAGTGTCTCAGGGGGAAGCACTGTGGTCCAGGTTGGCACTAACCTGTCCCTGTCCTGCGTCAGCGATGCCAACCCCCCTGCCAGCTCCTACCTGTGGCACTTGCTGAGAGATGGCCTGGTCATGCCACTGAACCACAGCACAGAGACCGCTGCGGTTACAGACTTGCACCCAGATGAGAATGCGTTCCACTGCACAGCTATCAACCCTCTGGGGAGGTCCAAGCCCTCCTCTAGTTTTGTGGTCACTGCAGAATACAAGCCATCTATATTAGCAAACTCCAGCTGCTCCTACCATGCTGGCCAAGTCATCTGCAGGTGTCAGGCCCGGGCTCGACCAAGGGCCAAAGTgctgtggatggtggatgggggaCCCCTGTTCCCTGGCTCTGACCCAACCACCTCCCCCCAGAACCACACGGTGATGGATATCTGGGCTGCAGAGGGCACCTATGAAAATGTGTCTGTCACCTGTCTGGTCAACAACACACATGGCCATGATAAGCTTCTCCTGAGTGTATTTGTGAAAGCACCACCCACCAATGTGTCCATCAGCCAGCTCCCAGCCCGGCCTCTGGAGGGAGAAAAGGTCACTCTGTCCTGTCTGGGTCACGGTCACCTCCCAATCAGTTCCTACAGGTGGTACCGTGTGTCCGGGGAGCAGTCAGTCCTGCTTAGAGAGGATTCTGGGAGTTTGAGTCTCTCTGTGACCAGAGACGTGGGGCAGTTCCGCTGTTCTGCTCTGAACGAGATGGGAGAGTGCAGTTCAGACACCACGGCTGTGAACGTTGAGTACGCACCAGCTATacttcccctctccttctgttCTGTGAATGATGGGGAGGcgaggtgtgagtgtgtggtggacTCTCACCCTGTGGCGCAGATCATTTGGACACCATGGAGCATTCAGGACAATCAGACTCACAACATCACTGACCTGCTCAACTGGAGGATCCTGAGGTCCATTCTCATTGGGCCCAAGGTTGATGACATGGGTGACGTCCTCTGCAATTCAACCAATGAGCATGGGAGTGCCTTCCTCAAACTCCCATTCATTGCAGGTGAAACGTCCGCCCAGCGGTCCCTGTTCTACGGAGGAGTTGGGGGCGCCCTGTTGCTGGTGCTCTCCTTCGCCTCCTTTTTATTTTGGAGATTCTACTCCACCAAGAGAAGAGATTGCCGTGTTGCACTGGAGGAGGTTGAGCTGAAGGGGGCACTGCAGGTGATACACAATGATCCTACTGACTGCCCAGGTAATACACTCACTCTGATGGTGTCAGACGAGGACTTCCACAGTAATGTGTATGACACCGGGTACAGGGTCCAAGTTTAAAACGGCCGTCTCCTCCTTTGTATAATGCTGGGAGGATAACATTTGGAGACGGGAGATATTAAAAAACACACTAGCACACAGACCAGTAGATATGGAAAGATGTTTATTAGAACAAGAGGTCAGTGAGAACTGGACTCGGGAACATCTTTGAATGCTCATCGTAGAATCATTTCCTGTGTTTGTTTAGGCAGCCCAGAGGCCCGTGTTCACTGGATTTGAGGTCCATGAGGCCTGGAGCTAAATAactgggagacagacacacagtcagttcTGTTTCACTTCTGTGTTGGTACAGTTCACTGGTGTATTTATTTACCATACCATTCTTTCTCCTTGAATTCTGGGCATGAATGTTAATATTTAATTAAGCTCCTTAATGACTGATCAAACCATTTTGTCTGACTGTAAGGTATCTAATATACATGCATTGCAATTCTGTGTAAATaaccatattgtaattacttggCAACAGATCATTTGAATAAATGAAAAGTGACCATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU275069 lncRNA downstream 45908 27165801 ~ 27166281 (-) True G240696
TU275068 lncRNA downstream 46631 27165108 ~ 27165558 (-) True G240695
TU275067 lncRNA downstream 47389 27164489 ~ 27164800 (-) True G240694
TU275064 lncRNA downstream 48793 27163187 ~ 27163396 (-) True G240691
TU275063 lncRNA downstream 49335 27162521 ~ 27162854 (-) True G240690
TU275344 lncRNA upstream 59221 27277205 ~ 27278598 (-) False G240951
TU275345 lncRNA upstream 59221 27277205 ~ 27286809 (-) False G240951
TU275346 lncRNA upstream 59221 27277205 ~ 27285324 (-) True G240951
TU275355 lncRNA upstream 71311 27289295 ~ 27289513 (-) True G240960
TU275361 lncRNA upstream 81959 27299943 ~ 27300330 (-) True G240966
XM_021595082.2 mRNA downstream 419 27206115 ~ 27211770 (-) True lim2.5
XM_036973705.1 mRNA downstream 52202 27154680 ~ 27159987 (-) False LOC110516678
XM_021595034.2 mRNA downstream 60531 27128099 ~ 27151658 (-) False LOC110516655
XM_036973703.1 mRNA downstream 60531 27128099 ~ 27151658 (-) True LOC110516655
XM_036973704.1 mRNA downstream 84701 27111084 ~ 27127488 (-) False LOC110516667
XM_021595112.2 mRNA upstream 11651 27229635 ~ 27233771 (-) False LOC110516750
XM_021595107.2 mRNA upstream 11651 27229635 ~ 27233978 (-) True LOC110516750
XM_021595167.2 mRNA upstream 306283 27524267 ~ 27526325 (-) True LOC110516838
XM_021595180.2 mRNA upstream 324580 27542564 ~ 27549343 (-) True LOC110516862
XM_036973732.1 mRNA upstream 336045 27554029 ~ 27560339 (-) False LOC110516872
TU275290 other downstream 27084 27184660 ~ 27185105 (-) True G240906
TU275055 other downstream 53525 27155568 ~ 27158664 (-) True LOC110516678
TU274911 other downstream 99567 27112182 ~ 27112622 (-) True LOC110516667
TU275019 other downstream 127129 27084340 ~ 27085060 (-) True LOC110516631
TU275018 other downstream 132245 27078039 ~ 27079944 (-) False LOC110516631
TU276496 other upstream 1037173 28255157 ~ 28256509 (-) False G242021
TU276553 other upstream 1057788 28275772 ~ 28280045 (-) True LOC110517114
TU276998 other upstream 1501470 28719454 ~ 28725203 (-) True LOC110517222
TU277045 other upstream 1508986 28726970 ~ 28730375 (-) True G242539
TU277105 other upstream 1563616 28781600 ~ 28786278 (-) False LOC110517244

Expression Profile