RNA id: TU275097


Basic Information

Item Value
RNA id TU275097
length 3731
RNA type TUCP
GC content 0.41
exon number 4
gene id LOC110516767
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 27240708 ~ 27264405 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGTCAGGTGCTTTGAGATAGTGGTTCTGGTGGGGGATTCCTGCACTGGATTAGTTGCGTGGAGCGCTGTAGTCTGAAGATTTTTTATTTTGGTCTGAAGAGTTAGAGACATTAAACTAGCTGTTTGCACCTGTTTGTATGGAGGTGGACAGAGGACTCCCAGGTTTTGAAAACGGGTGAAAAGTTCTATTTATTTTTGTCTGTAGGAAAATGGATGGCCCACGGACACCCAGAGATGAAAGGAGGAGAGCTCAACACAATGAAGTTGAGAGGCGGCGGAGAGACAAGATCAACAATTGGATTGTCACGCTCTCCAAAATCATCCCCGACTGCAACATAGACAGCACCAAGACGGGGGCTAGTAAAGGGGGCATCCTGTCTAAGGCGTGTGACTACATCCGAGAGCTCCGTCAGAATAACCAGAGGCTCCTGGACGGTGtcaaagaggtggagagagtacAGGTGGACAACGAGCTCTGCAGACAGCAGATCGAGGAGCTGAAGAATGAGAATGCCCTTCTCCGAGCGCAACTCCAGCAGCACGGCATCGAGAGCGTGGGCGAGACGCCGCCACAATGAACGAGGGAGACTGGGAGAGCAGGACGGgtagaaggaagaggaggacgaggcaGACTGGAGACGACACGTAGGAACAAAACAAAATGAACGAGCTACTGACAAATCACTGTTTTTCAGTCGCAGACAGTTAGTCTTCCATGGCCTTGTCTTTAAGGCTGCATCCGAGACTCTTGGCAGGCTCCTGCTGCTTTGTTGGCTGCACTTGACTGATCCAGGATCAGTCGAAATGACAAAAGAAGCTACCATGTAGACAACAGACGTGTCTCAGAGAGAGAACCGGTCGCAACCAGCAGAGAAACCCTCTACTAGCCCAGCTCCTCCCTCCCATTGACATTGGATATTTTGTTATTGAGTTGTTTTCCCATTCTCTTCAGTCATATTTTATTTTAGTCTGTATTTGTGGTTGAGGTTCATATTACCATTTTTTGTTACGTTAGTGGTTTTAAATTATTAGTTTGTGTATTGTTAAAAATCTGCCCAGAAAGACTCATTTAGGAGATCCGATGTATCCTAGAGGAATAGATGATGTATGGGTGAGAGTGTGGTAGGTTACCAGTCAGTAGAACAGAAACACGATACAAATAAACCGCTGCATTGCAGATCTATGTGAAAGAATGGCTTGATAGTTGGCAATATTATTAGGTGTTTTCAAAGGTGACACCGATATACAGTGAGCTCAAAGTATTGGGATGtgacacatttttttgttttggctctgtccTCCAGCACTTTGAgatgatacaatgactgaggttaaagtgcagactgtcagctttagtTTTGTTGTATTTtaatccatatcgggtgaaccgttttaGAAATGACAGTACTTCTTGTACATTCCCCCCCATTTTTTAAGAGACCAAAAGTATTTGGATGTAttcatgtgtattaaagtagtccaaAGTTGAgaatttggtcccatattcctagcacgcaatgattacagaaagcttgtgactctacaaacttttCTGTGAACgtcattttctgtttgttttagaTTGATTTCTATTGgccacaaaataatctgaaacgaTGGTAAATAATACATTGTCATTTTGGAgacacttttattgtaaattagTTTCTAAACACGTCTACATTAATATGGATGCTACCGTGATTACtaatagtcctgaatgaatcgtgaatcaTGATGAGTGAAAGTTCGACAGATATCAtgcctccaagacatgctaacctctcaccattacaataatgGGAGGATAGcattgttggggggggggttaagatatttatgcctctaactttctcactcgtcattattcacgattcattcaggtcTATCTGTAATCATCAAACACAaccaaacaaacagcaaatgcagcCAACTAGTTTGaatagtcacaagcttgatgtaatcattgcgtgctaggactatgggaccaaatactaaaccttTTGagtactttaatacacataaatGAATTCGTCACAGGGGGGGACttactatgtacaaaaagtgctgacTATGTACAAAATGTGCTTTCTAAACAGCAcccgatatgtatgaaaataccctcaaatttaaagctgacagtctatactttaacctcagtcattttCTCATTCCAAATCCAAAGtcctggagtacagagccaaaacaacatgaaatgtgttactgtcccaatactttgagCTCACTATCTCAAGGATGCAATTTTGGGGTACCCGGAGGAATAGCTGTGCTTTGCCCAATATCACAGTTTACAGTGCCTGCATTAACAGACCTGTTTTTAAAATAGCATCCATGCAACATTATATAAATGTTTCATGTTGAAGTAAAGCCAATGGCCACTGGCGGAAGTGGGAAATTTAAGTGGTAATCAATAATTAATTTACTGTACTCTGGCCCTTTTCTACAATTATGCAATTTAATACACAATCTTTAAGGCTGGTTTGAGACTGTGGCCGGGTTAGATTTGATAGACCACTGATACGGCCTCTGAAAGGTTGAGCTCTTAAAATGTCACCTGACATATGAAGTGAGTGCAAATGTAAATTATTCTGGGTGGAACATCACAGGTTgtatccgaaatggcaccctattatgtcgtgcactacttttgaccaacaGTAGTGAtttatgtaggggatagggtgccatttcagacactaCTGAGTTTTTAATTTCAACATTGTGTCACGTTAAACTCACTCTTGAGAAAGCGGATTGAGTTCACTGCTAAGCTAAATTTAGCGGCTACAGAAGTCTGGATGTTTTTTGCGAATGTGCGTATgatgtgtctttgtgtgtaagAATAACCACAAGTATCATGTTTTGGCTTTTATTTTTGTAACCAACACATCAAATGGAGCTTAATGCACCCAAGGAAAAATACTCTCTGGAGAGAATAAATGAACCAACTCACTGCTCAAGATAGAAACCAAGAACAGAGAATCTTCCCGTCCTTGCACTTCGTATCTGCTCTGAATTTCCTCTCCTTGCAAACAGTAATGGTTGCTAATAAAGACTTGGGAAAACATTTCATCTCAGACACTCTTTCACTCATCTAGGACAATAACCAAGTTGAAATGCATTGAAAGTGCAAACAGGcaagttgatgatgatgatgatgatgataataccAATGTTATTGATGACTGGATTTGCGTCATGCATTTTGTTCTGAAATTGGGGAATGGGAATAGGTACATATGTGTTTTAGTCCCTAATCAGGGAGTTTTAGACATGTAGTCTGCCTCCGGCATCAGCAAAGCAGCACTAATACTCAACCCTGCGAAACGTCATGTGTACTCCTATGATTCCACCTCGACAAGCTCTCCTACTCTATGGCCTTGTGCTTTGTAAGTGCAAAATAAAATTGTTACCCTGTTTTGCTCGATACTGTCTCTCAGAACTGTTGCTCTTCAGCTGAATAAAGCCGAAGTAGATTGATAATGTTTATTTTGCAGTCAAATTCTTCACGTTTAGTGGGAAGTGAGCACTGTCAATTATGGTGAAAATAACTAATATGTTAGCGAAAGGAAATTGTTGGCTatagtttgtttttttgtttgtttgctgtaGTTAATTTTGTTTGTCCCCTTTAGCAGACGTGCTATTCTCAGGTTAGATTATAAGACTTTTCTAAGTAAAattgcagaaaaataaataattgacttGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU275104 lncRNA upstream 39855 27216499 ~ 27216733 (+) True G240725
TU275090 lncRNA upstream 55115 27201136 ~ 27201473 (+) True G240716
TU275088 lncRNA upstream 57153 27199223 ~ 27199435 (+) True LOC110504003
TU274672 lncRNA upstream 79025 27177328 ~ 27177563 (+) True G240343
TU274669 lncRNA upstream 83358 27172583 ~ 27173230 (+) True G240340
TU275131 lncRNA downstream 12141 27276534 ~ 27276743 (+) True G240752
TU275132 lncRNA downstream 12806 27277199 ~ 27278377 (+) True LOC100135935
TU275143 lncRNA downstream 36331 27300724 ~ 27300923 (+) True G240764
TU275222 lncRNA downstream 159884 27424277 ~ 27424507 (+) True G240842
TU275265 lncRNA downstream 206807 27471200 ~ 27472402 (+) True G240883
XR_005039844.1 mRNA upstream 16683 27239339 ~ 27239905 (+) True LOC118944508
XM_021584265.2 mRNA upstream 51298 27203660 ~ 27205290 (+) True LOC110505200
LOC110504003 mRNA upstream 56561 27197869 ~ 27200027 (+) False LOC110504003
XM_021595070.2 mRNA upstream 61317 27185382 ~ 27195271 (+) False LOC110516690
XM_021595075.2 mRNA upstream 61317 27185382 ~ 27195271 (+) True LOC110516690
XM_021595153.2 mRNA downstream 12512 27276905 ~ 27278371 (+) False LOC100135935
XM_036964755.1 mRNA downstream 21627 27286020 ~ 27286803 (+) True LOC110505210
XM_021595161.2 mRNA downstream 93004 27357397 ~ 27517076 (+) True LOC110516825
XM_036964256.1 mRNA downstream 253911 27518304 ~ 27519539 (+) True LOC118944509
XM_021595197.2 mRNA downstream 311418 27575811 ~ 27583456 (+) False LOC110516883
TU274539 other upstream 204634 27051186 ~ 27051954 (+) True G240244
TU273986 other upstream 928257 26327408 ~ 26328331 (+) False G239752
TU273987 other upstream 928563 26327408 ~ 26328025 (+) True G239752
TU273930 other upstream 1036405 26213642 ~ 26220183 (+) True G239697
TU273162 other upstream 1714975 25540769 ~ 25541613 (+) True G239026
TU275557 other downstream 291779 27556172 ~ 27558532 (+) True G241150
TU275655 other downstream 450650 27715043 ~ 27723794 (+) True LOC110516984
TU275657 other downstream 482954 27747347 ~ 27749726 (+) False LOC110516993
TU277370 other downstream 1767318 29031711 ~ 29034714 (+) True LOC110517275
TU278253 other downstream 2403986 29668379 ~ 29690796 (+) True G243679

Expression Profile