RNA id: XM_021595161.2


Basic Information

Item Value
RNA id XM_021595161.2
length 7915
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC110516825
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 27357397 ~ 27517076 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTATTGTTTCTCGGAGCGAAGCATTGAGTGCGGGGCGACAAGACGCGTTGCATACCAACAGAGATCGAGGAGAGTAGGCTAATTACGGGACGAATTGTCTACTACAGAACGCATATATTGTATCCATTAGTTTGCAATGTTCTGTCGAATATTTGGCAGAAAGCAGTTGAGTATTTACCTTCGTGTTCAGGTGCGCATTTGAGCACATTTTCTCTCCAAACCATTGAAAACAACATTAATTCAGTGTCTGGAATATTTGCGGATATTTTGCACCAGGATTTTGTGTCATTTGGTATTCCCTCTACGTCTACGAAAACATCAACAACCCCTCTTTGGttaaggggtggggggggggtcatcaaCGAGAAAAGTCAAGGGAATAGACTCATGTTTTTGTTCAGTCACATGTAAAAGCAGTCGGTTATTGCTGTTGGACATAAATAACACACACGAGGTAAATCGTTTCACATTTTACCTGTAAAGGCTCCATAGAAGAGGACTACAACGGTATTCTACTACGAAAATAGTAAAATATCTATCGAAACATCAAAACATGAGCTGCCCAGTCTTACGAAACGTGTTCGCTGGTTTGCTCCTCGCACTGCTGTCGAGCGGACCAAGTGTGTACGGAGCCGAATTCGGCCACCTGCCCGACAACATTACAGTGCTGGAAGGAGAGAGCATCATTCTGAGGTGTAAAATCGACAAGGAGGTGACCCACAAGGCGTGGTTGAACCGCTCAAACATCCTGTTTGCGGGGACAGACAAGTGGTCGCTGGACAGACGGGTGTCGCTGGTCAACAGTAACACTAGTGACTTCTCCATCCAGATAGAGAGAGTGGAGGTGGCTGACGAGGGGCTGTACACCTGCAGCTTCCAGGCCAGCAACAAGCCCCGCATAGCCCACGTCTTCCTCATCGTCCAAGTGCCAGCCAGAATCGTCAACATCTCCCAAGACGTGTCAGTGAACGAGGGGGGCAACGTATACCTCTTCTGTCTGGCGGTGGGACGACCTGAACCCACTGTCACCTGGAAGGAGAACAAATATGGTCTAATGAGTGAGGGGGAGTTCCTGGACATAACAGAGATCAAGCGGCATCAGGCGGAGGAGTTTGAGTGCATCACTAACAACGGAGTGACGCAGCCCGACATACGCAAGGTCAAGGTCACCGTCAACTACCCTCCCATGATCACAGACGTGAAGAACATGCCAGCCCAGCTGGGAAAGACGGCCATTTTGCGCTGTGAGGCAATGGCAGTACCCACAGCCTCCTTTGAGTGGTACAGAGACGACCGCAGgCCGTTAGAGAGCGATAACACTCTGAGGATCAAGAACGAGAAGACGCGCTCACTGCTTCTCTTTACCAACGTGACGGACAAACACTTTGGCAACTACACTTGTTTTGCCTCCAACAGGCTGGGAGCCTCCAACGCCAGCATGCTGCTCTTCCGGCCAGGAGCCGTGTACGGGCGAGGCGTGGCCGTCAACGTGGGGGTGAGTGCGGGTGTTGGCTTTTGGctttgcctctctgtctctctcctgatGAAGGTCTAAGAGCTTTTCCCAGAAGTCCCATCCCGCCTGCGGAAGGAAGAAGGAATTTATTTAATTACGAACCCATCACTGTGAAACAAAAATAATATGCATTATTCCAGGAGCCATTGACGCATCGCATCTCACACCCACACCAACTCCCCCCTCGCTACCTATATTGCCACCATCAccataccactctctctcttcatcctgtttccaatgaggGTCACCATGGTGATGTCTATAATGTGTTTAGTAAGAATGATAATTGTGATGATGATGAAAACAGATATTTAACACCAGGATAATACTATTACAAATCTAAATCATGACTGATCTACAATAATGTTCATGGACGTTTGGAAACTCGGAACAAACTATTTACGGTTGGAACTACTCTATAATGAAAATGATTCGTTATTCTGATAAGGGTCACGTGACCTTGTTGAAAGCTGTCCATTGGCCCATTGCTCCTGTGACATTTGACCCTATGATCATACAAGTACCATTTTATTCCGTTTTTAACCATGTGGCAGTGTATATGACGCGGCTGCTGCGAATGATGTCAAAACACACATGAAGGGTGGGCCGTGGGGGTTCTATAAAGCCTTTGCCCTTCTAGTGCATCCCTTTGGGATCTCAACCAAGAAGAAGCATGTGAGAAGACCCACTTCACCccccctccatccaccccccacccctctttaAAAAAAACTCGTCCTCTGCCCACGCCCTCCCCCCATCGATAAGGTGGTTTGTGCTCCGTCCCGTGTGTAAATATAATGCAGTACAGAGGCCATGCCGTTACTAGAGGCAGTCTATCCACATCcaaccctccttggttggtggcTAATGTAGTGGCTAATAAAATCTAAAATATCCCGCCAAACTACATTACCCATCAGCATCTATTACAGTTTTCGTAACCAGGAAGGGACTGTAGAAATAACAATCATGTCTCCTGCTTTGAAGGCGTTGACCAGTCATCCTCCTTCCTTGTCGCTTGTTGATAGCATGTACCGGTTAGAGATGTTTCTGTCGTGAaacctccctcccactccccctcctcccctgtccgTTTTACTCTGCAAGGTTAAACTGCTATAACTTTTTTGGTGTCGATAATAATACTGATGATGTTAATAAGTATTTAAATAAATATGAAAAGTAATTCCATGTGAGATACAAAAGAATACATGCTACTCCAGAGCTGACGAGCCGTGTGTGCTAAAAATATTTTGTACTCAATCCCTCGGAGAAATCACACTCATTGAACTGAACGACAACGACAAAAGAGGGAGTTGTAAGGTTTTCAAGTTGTGCTCTTTTTTGCCATGACAAGGACTTTAAAAACACATCGAAGCTGATCCCGAGGGAGTCTTTTCATCTGAGAGAGTCCGCAGTCAATGAAATGTAATATTGTTTGTATACGTGTATGTATTTAAACCTTTGTTTTCATGCTGTTAACTGTATAAAGCACATTACACATATTCAACCAGCTTTCATAGCGTGTCACTCTCcagacagaccagctcaataGATCAATTATTCAAAGTGATGCATGTAAAGCAGCCGTCCCTGTAAGTCAGTCAGCCCCCGTATGGCAGGACAGGCGCACCAGGAGATAAAGATGTAATTAGCCACTACCTGTGGCTGGATAAGTGACGGGGCCTACACTCCCCGCCTCCCCCCATGTCCTTCCCGCCAGCCATAGACAAGCCCCATAAATCACGTTCAACCCTGGCCCCTGACAGGATCCTCCTCAAGGACACCCTCGTCCCTGTAAAGCAGACGCGGAGCGTCCTCACAAACCACCTCACCTGGGCCCtgattgaacccccccccccccccagggctcAATTATCCAGCCACTTTACCTGCACAGATCAACCACCGAGACGTGCACTGTGAGGCTCGATGACACCCCAACCACCCAaccgctgtctctctgtcacgTCCTGCTGTGTCTATGTCTATATGCAAACTCCCCCATAGTGAACCAACCTGCATGGAGAGATGGGCTCACACTAGCAACTCTCTGACTACCCAAAATTCCTGTGACCTTACAGGAATATGCAGCATCTGTATTCAGTATTCTGCGAATAGCTGTcatctttttttttgtttgattTAATTTTAACCAACAACATACCTGCTAACTCAAATATATAGGAGAGGCATCCAATCCGGCGGTGCTATGATATTTAAGGGTGCCCCTAACAATCTATTCAAGAATGGAACTGTTTTAGTAACACTATTGTATGAAGTGTGCTAATGTATGAAGAGATGTGAAGCCCTAGCGAGAGTGAATGTCCCCTTTAGCAGGAGGCTAGTCAATGAAAACCTGTTTGTCTCACTGAATACAGTGTGAGACGTGTTCTGTTGATGCCCGTTGCTCTATGCAATGTAGTCAGTCACTGGTATGTCTGAAGGGAAACACACAGACCCACTTGTGTTCGTCTTGTTTTGCTCAGACTCACAGGGCATTGATGGGTATCGATTTTCAAGCACAAGAGCAGGTTGTTTTGGTCAGTGATTCTGTTTTTCCTTCTTTGTCGTTTTcgatccccctctctcactcacgctgtctttctgtctgtcttctctctttcccATACTCTGTCCCGTGTCAGCACCCAGCTCAATTTTGTCAGTGGAATAAACTTCTGCATGTACATACTCTGTCCTTGAAGAAAAAAACGAAATGAAAATAAGGAAAAACATACTGTCATGTTTCTCAATGTGGGTTTGAAAAAAAAGCATGTAAATGTTCGTTTTGGAGAGATTTTGAAAAACAAAAAGCTGTATCTTGTGTAAAGGCTTTAGGCTGGGGGAAAGGCTGGGGGATATGCTTTTAAATTCATGCAATGGAGGGTGAAATGTATGGTGGGCATTTTTAATAACCCCAAATAAGTTTGAGGGTCTCCATGAGTTCTTCATCAATGTGAAACTTAATCAGAGGACTGGAAATGGGAAAAGGAAGGATGCAGCGAATTCACTTCCTCGGTGGGTGTGAGAGGACCTCCACACACCGTGGGAAGAAGCCCAGACTGGTACAGACAAAGGTCTGAGGCAGAGGGAGATGGGATGACTCTGACCAGACAGTGAACTTTCTGTGGGGGAGAACGAGAAAAGACAAGGCAGACACTTGATAGGATAGCAGCTCAAGATAGAATTCCTAAAAAATGGCCACTGCCTCGTTCCGCCTGAGGGAGGACATACCACGGCGTAGTCTATGGTTACACCATGTAATATTAATGGCGTTAGCACTGCAATGATCACGAACACTGTCTGTGTACAGGCAGCATTTCATGACTCTATCTGCTAGCCTATCAATGAGCGTTTACACTTTATTGATATGGTGTGGTGTCAAATAGCTTGACCTGTAATTACAGCACAGAGACATGCTGTATGATTCTAATGGACGTAAGTGGTGTAATTACATGTAGTTCATCACCCCCAATAAATGGGGGCGGTGCTAGTTCTACGGGCGCCACTCGAGCATTGCTAAGCAGCACTTTTTGGCTTATGTTGATGTACATAATATAAACTATCTTGCTTCATTTATATATGAGATTATTTCAATGTTTTGAAGACAATTATAACCATATTTGGGtggtgtatttttttatttatgaaTGACAAGCCTAGCGGTATATGAAAATACAGTGGTAGAGTAGCAGTAGAAGCTAGATAACTGTACATTCAGTCTCCGTTTGAGTGTACTCGTTTTTTTAAGTTGTGTATCTGTGTTAGATCTTGAATCACCATAAGCACTATATTCCAGTCCACATTAAACAGTTCCTTTACAGACTTTCAGTTCCAAATGCAAATGGTTAATCGATACATTGGACTGGATCGCTTGAAATAGAGCAATTTCTCCCCAGGCTCACTTTACCGGGGCCCAAAGACTGAATTGTCAAGTGTCTATATTAAGGCCTTAGAATAGAGAGCATCATTTATCATTCCTTGATACAAGACACCCCTAATTGCGCATTGATTTTCTCCCCATCTCCGAAAACATTTTGGCCGAGCTATATTGTCAACGAAGGTAACTATTTGTTTAGAGAACATACCATGAAGAATGAGACGTTTGTTTTATTTTCCTGTCAGTTGAAAGAGTAGCTCGTCAAGGCGCATTTTGTTCTTTTTGTTCTTTCTGATAATGAGATGTCTAACAATTGTCTGTATAATGGCACCTTCTAGTACATTATATTTTATTATTGTACTCAATTAAATAAATGATTGATACCAAATGTTAATTTTGGAAATGTCAGTACCTATCGATACTGTGTATCTAGAGACTTATGTCTGACAAACACAGCCGACTCTTTGGTAGGAGTAGAGTCTAGAACGATAGGATGTACAATAGAGCAAGATGAGATAAAGGGGAATAGAACCGTAGCCATGATAGTATTTGGTCAATATTCAACTAAGATGATAAATTATCAGAAATATGTCAGATTTTCAGTACCGGTACTATGTATCTGTAATACATAAGAAGATGTGTCTTATTGAGGGACAGACTCATTGATATATAAATGATTTCCTTAGTACCAGCCAGGTCTCTCCAGCTTTTGTCCTTCACACCATAGTCCACTAGCTAGATAACAATGTGTTATCCTAATGAGCTATTGTTCACCAGCTAATCTAAAGGCCTGTTCAATTCCTATGAGCAGAGTCAACGCTGTGAGTGTATTTCAGCTCCAGTAGATTTCCATTAGCTGTACTAATGAGTGCATCGATACACAGCATGCTGGACTGAGGTGAGCTACATGATGAAAATAGGTCGTTATTGGGTTAACATGCTGACTACATGTTGCCAAGCAGAGGAAGTGATATTTGCCTTGACTCACTGAAGAATCAACTTGGAAGTTGAATGAGGTAGCAAGGTACTATATAGTAAGTTGGTAGTAGTTGAATTGATAGATACACAAGGACAGAATATATAGGAAAAAAAGATAGAGTTATGTAGAGAGGTGGATATTTTGTTAGTTTATCGTTTCTATTCTGAATTCTAATTAGGATATATTATTATTCATGTAAAACATTGacagtgtttgtttgtgtggatAGTGGGTTAAAGTAATACTTGCGAGCCACAGAGGCAAGAGCAGCAGTCACTCACTCCCACCTCCATCCATACAAACCGGCAGGGACTACAGATGGTTGCTTGTCAATCACCCTCTCCTTTCTAAGAATGTAGCTAGTGGCTAATTAACAGTGTACCAGTGTTGGTCCATCTACAGCTGGAACAACAAGGGAGTCTGCACACTACTAGGCAACAATGGAGGTGCCCACCAGCCAGCCTCCTTAGTCATTAGAAGCCTGCCTAACATCTCCAACACTGAGTGCCCCTTTACTTGGCCTTTGTGAGTCACCAGCACAAATCTGACATTTTGCCTGTCAATCAACTGGGTAAATATTGGTTGCCATGGCGAAAACTGACAATGGAACTATATATTTTTCTTGTCGAATGACATCATCAAGTGATGTTCTGGCTTGTGTTCATAGGATAAAATGGGAGAGAACCTGTACGGTGTGACTAAGTCGCAAACTGTCTGAAACTGTCCTATTAATGTGAGATGTATAGATTTGAATTTATGACACAATATAAGATTGGGTTGTCATGACACTGTTGTTTCACCAGAACAATTTTGAAACTTCTGAAAAACTATGACAATCAGGTAATAACAATTAACAAAGACAAATGACATTTTTGTCAGTGCGAGAACTAATAACAAATATTAGGTTGTTTTAGCAATCCAGTGGATGAATCTACTCTAGAATGCTTGGTTAGTGTTTGCGGACATCGTATGGAGATGTcatgcccatctctctctctcgatgcaCCTCTGGcccacttcctcctccctcctcctttccctcaaTGTGGAGAAAACCTTCCACCTGTGCCCCCCCCATGCCAATCCCACTGCCTGCTGCCTTGCCACCTCTCTGTATGCCGGGTTCCAACCCTGGTAAATCTGTGTTATtgatttgtgagtgtgtgtgtccgtgtgtgtgtgtgtggattatcTGACCTTCACATGGCAGGCATGTTGGTTTCAATCTACCCCTGGACCTCAACATTATTATTTCTGTCTGTGTTGACTTTTCAAGATTGCATCGATATAACTTACTGAACAAAACAGAGGAACACAAACAGCATCGTCTTCCATCTTGACATATTTCTGTGCAGTGAAGCGATGATGATTATGACGACTCTTTTGATTCATTtgatctctgttctgtctctgtttttGTCCTTTCTAAGTGTGTGGACAATTTTTCCCCCCAAATCTATAGAAGtggagttaaaaaaataaaatatatcagAGGGAGAAAAATCAATAAAATATGTTGTTTTTAACAGAA

Function

GO:

id name namespace
GO:0005515 protein binding molecular_function

KEGG:

id description
K06773 OPCML, OBCAM; opioid binding protein/cell adhesion molecule-like

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU275143 lncRNA upstream 56474 27300724 ~ 27300923 (+) True G240764
TU275132 lncRNA upstream 79020 27277199 ~ 27278377 (+) True LOC100135935
TU275131 lncRNA upstream 80654 27276534 ~ 27276743 (+) True G240752
TU275104 lncRNA upstream 140664 27216499 ~ 27216733 (+) True G240725
TU275090 lncRNA upstream 155924 27201136 ~ 27201473 (+) True G240716
TU275554 lncRNA downstream 36091 27553167 ~ 27553409 (+) True G241147
TU275556 lncRNA downstream 36953 27554029 ~ 27555335 (+) True G241149
TU275559 lncRNA downstream 44041 27561117 ~ 27562189 (+) True G241152
TU275562 lncRNA downstream 47931 27565007 ~ 27565212 (+) True G241155
TU275565 lncRNA downstream 50754 27567830 ~ 27568045 (+) True G241158
XM_036964755.1 mRNA upstream 70594 27286020 ~ 27286803 (+) True LOC110505210
XM_021595153.2 mRNA upstream 79026 27276905 ~ 27278371 (+) False LOC100135935
XM_021595122.2 mRNA upstream 92992 27240709 ~ 27264405 (+) False LOC110516767
XM_036964256.1 mRNA downstream 1228 27518304 ~ 27519539 (+) True LOC118944509
XM_021595197.2 mRNA downstream 58735 27575811 ~ 27583456 (+) False LOC110516883
XM_021595203.2 mRNA downstream 59025 27576101 ~ 27583456 (+) True LOC110516883
XM_021595210.2 mRNA downstream 71139 27588215 ~ 27592913 (+) False si:dkeyp-97a10.2
XM_021595208.2 mRNA downstream 71216 27588292 ~ 27592913 (+) False si:dkeyp-97a10.2
TU275097 other upstream 93004 27256588 ~ 27264393 (+) True LOC110516767
TU274539 other upstream 305443 27051186 ~ 27051954 (+) True G240244
TU273986 other upstream 1029066 26327408 ~ 26328331 (+) False G239752
TU273987 other upstream 1029372 26327408 ~ 26328025 (+) True G239752
TU273930 other upstream 1137214 26213642 ~ 26220183 (+) True G239697
TU275557 other downstream 39096 27556172 ~ 27558532 (+) True G241150
TU275655 other downstream 197967 27715043 ~ 27723794 (+) True LOC110516984
TU275657 other downstream 230271 27747347 ~ 27749726 (+) False LOC110516993
TU277370 other downstream 1514635 29031711 ~ 29034714 (+) True LOC110517275
TU278253 other downstream 2151303 29668379 ~ 29690796 (+) True G243679

Expression Profile