RNA id: XM_021595167.2


Basic Information

Item Value
RNA id XM_021595167.2
length 2059
RNA type mRNA
GC content 0.49
exon number 1
gene id LOC110516838
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 27524267 ~ 27526325 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGGATGTTGTTTCAATTACACCCTCCACTTGGCAAACTTAAAAGGGGTGAGTAGTGAGTAACAAAAAGCCGTAAGAAACCGTAATGTAGCATGTTGTAATCTCTTTCTATCCTCTCTTGCCATCAGAGTCTTGGAGCCCTTGAAGAGACGATGAGTTGGTTTATTGTCAGAGACAGGAAAACCACGCTGTCTACCCGGGTTTGTTCCAGGCTGTTGACCCAATAAGCAGCCTTCGCCTCTGAAGCCTCAGACTGTCTGACAGATCAAGCCCCTTGCGCTGCAACGTTTTCATCCCCCCCAGACTGCACTGAGATGATGTGACAGATCTTGCTCCCTGTGCCTTCCAGTAACTGTACCCACCGCCGAGGCCACCATGCAGGAGTGCCATACTgcgttgtgtctgtctgtctaccttgTCACCTTTTTGACGGGCTTCCCAGCCAATGCTGTGGCCTTCTACACCTTCAGCAAGAAGGTAAGGCAAAAACCCACGCCCATCGACATCCTGCTCCTCAACCTGACCATCTCGGACCTCCTCTTCCTGCTCTTCCTGCCCTTCAAGATGCAGGAAGTCACGAACGATATGACCTGGAGTCTACCCTACATCCTCTGTCCTTTATCTGGCTTCTTCTTCTACATGACTATCTACGTCAGCACCTTATTCCTGACAGCGGTCAGTGTGGAGCGCTACCTGGGCGTGGCCTTCCCCATCCAACACTCGCTGAAGCGCCGGCCCCTGTATGCCGTGgtggccagtgtatttatctggGTCTTCTCCGTCCTCCACCTGAGCATCGTCGTCATCATGCCCTACTACAACCCACCGCAAGACTCCCTCAGTTCCACAACCAACTCTTCCAACAGCTATGAATTCTCCAACGTCTCCATTGCGCCTCTTAGTGACGTCAACAACATTGCGTCTTCCAGGAATGTTTGCTATGAGGACTTCAGCGAGAAGCAACTGGCGATCCTCCTGCCTGTGCGTCTGGAGCTCTGCCTGGTTCTATTCTGTGTACCTTTCCTCATCTGCAGCTTCTGCTACATCAACTTCATCCGCATACTCTCCGGCCTGCCCCACATCGGGCGTCGCAGACGCCTCCGTGCTATCGGCCTGGCTCTGGGGACACTGCTGGTGTTTGCCTTCTGCTTCGGCCCCTACAACGTCTCCCACATTGTGGGCTTTATAACCAGGAAGAACCCCGACTGGAGGGACATGGCCTTGCTCTGCAGCACCTTCAACGCCTGCTTGGACCCCTTCATCTTCTACTTCTCCTCCTCAGCTGTCAGAGGGACCCTAGGGAGTATGTTGCAGGGGGCCAGAATCAGGCTGGCCAAGTGTATGTTCTGTGGCTGTCACATCCACTGGTCCCCTTGGAATGGAACGAGCGAGCCTCAGAAAGATAAGGGACCCAAACAAGTAGAGATGAATGCTATCTGAAGTTAATTGAATAAGGCCTGTATTAACTGAAATGAGATGTTGTGCTCCTCATGTCTAGTGGCAGGATATGAGTGCTCTGATGTTTATGTTTTCACATTttactgtatctgtgtctctgtttgATCATTGGCGGGCAAACTTCCTACTTAGAGTAGAGATAGGATATGGTAGACACGGAGCCTGCCTTCCTCCTGAGAGACACAAAACAAGGGCTCACATTAGGGAGTTACTGCCTAGCTGCAGTTAGCTGGAATCAAGTACAGTCATTGCCAATTATGTATTATAAGTACACACCTACTGTGACAGTGCGTGAAATAAGTTTGAGAATACATTTGTTCTATTGGGTTGCCTGACAAGATTGGCAAACAGAACAGAAAATGATCATTGATTATAATTGTATTTCACAAGGTTGAAGCCCATTTACACAACTAGGAGCGGTTATGGTGAACTGTAGAGAACAACAGCTCTAACATCTGAGAGACACATCAGAACAACATCTCTCAGCACTGACGGATAAGCACCTCAAACAAGTATCACAGTCGTATCGCTGAAAAGGAAACAATGTTGAAAAGGAACAATGAATTTGAGCACTGAGcagagttggtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU275527 lncRNA downstream 340 27523700 ~ 27523927 (-) True G241122
TU275506 lncRNA downstream 6412 27517605 ~ 27517855 (-) True G241101
TU275505 lncRNA downstream 7224 27510628 ~ 27517043 (-) True G241100
TU275413 lncRNA downstream 51285 27377482 ~ 27472982 (-) False G241015
TU275415 lncRNA downstream 52219 27377482 ~ 27472048 (-) False G241015
TU275533 lncRNA upstream 1340 27527665 ~ 27527964 (-) True G241126
TU275542 lncRNA upstream 14038 27540363 ~ 27540616 (-) True G241135
TU275731 lncRNA upstream 14814 27541139 ~ 27541481 (-) True G241311
TU275736 lncRNA upstream 25036 27551361 ~ 27551675 (-) True G241316
TU275737 lncRNA upstream 25728 27552053 ~ 27552333 (-) True G241317
XM_021595107.2 mRNA downstream 290289 27229635 ~ 27233978 (-) True LOC110516750
XM_021595112.2 mRNA downstream 290496 27229635 ~ 27233771 (-) False LOC110516750
XM_036973716.1 mRNA downstream 295764 27212189 ~ 27228503 (-) False LOC110516735
XM_036973717.1 mRNA downstream 295764 27212189 ~ 27228503 (-) False LOC110516735
XM_036973718.1 mRNA downstream 301712 27212189 ~ 27222555 (-) False LOC110516735
XM_021595180.2 mRNA upstream 16239 27542564 ~ 27549343 (-) True LOC110516862
XM_036973732.1 mRNA upstream 27704 27554029 ~ 27560339 (-) False LOC110516872
XM_036973730.1 mRNA upstream 27704 27554029 ~ 27564454 (-) False LOC110516872
XM_036973731.1 mRNA upstream 27704 27554029 ~ 27564456 (-) False LOC110516872
LOC118944661 mRNA upstream 66744 27593069 ~ 27609600 (-) True LOC118944661
TU275290 other downstream 339162 27184660 ~ 27185105 (-) True G240906
TU275055 other downstream 365603 27155568 ~ 27158664 (-) True LOC110516678
TU274911 other downstream 411645 27112182 ~ 27112622 (-) True LOC110516667
TU275019 other downstream 439207 27084340 ~ 27085060 (-) True LOC110516631
TU275018 other downstream 444323 27078039 ~ 27079944 (-) False LOC110516631
TU276496 other upstream 728832 28255157 ~ 28256509 (-) False G242021
TU276553 other upstream 749447 28275772 ~ 28280045 (-) True LOC110517114
TU276998 other upstream 1193129 28719454 ~ 28725203 (-) True LOC110517222
TU277045 other upstream 1200645 28726970 ~ 28730375 (-) True G242539
TU277105 other upstream 1255275 28781600 ~ 28786278 (-) False LOC110517244

Expression Profile