RNA id: TU275655


Basic Information

Item Value
RNA id TU275655
length 1362
RNA type TUCP
GC content 0.44
exon number 4
gene id LOC110516984
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 27705985 ~ 27723794 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCTCCCGTCACACTGTTGGGTACCCAAACTACCAGGTGCTCTTTGGTTGGCTGGGCGCTAGATGGTTGGAGGTTAGACTGGCCAGTTGGAGTAGCAGCCACAGGATCTTTACCACCACAGAGCCTGTGGAAGGTGTGGAGGatccaacttttttttttacgaCTGCATTCCGGACCGCCTTTTTCCCTGGAGCAAGTCGGAAACCCTGAATTTCAAGTCATTTTTTTGCCGCATTCCTCCTTTTTGCCTGAACAAAAGGGTGTAATCGCAACCAGGTCTCCAGACCAGAGCTGCATCAACACACCGCGCAAAGAAACCAACCCCAGACCCACTACAGACATGATCATCAGACTGGGCAGGCTGACCCCTGGATACTTCCGCCTCCTACAGGTGGCGGGTGAGGTGCAGACCCAGCCACAGGACCGCGCCGTCAACCAGATAGCCATGATGCTGGCCATCATGGGCCTGAGCCTGTCCTACTACAGTGCCAAACGGATGACCGAGAAGGTCCATAGGCTCCAGAAGAGAAGAGAAAGGCCCATGGTGAGGTTTGTGTGGTCCTGATAAAGTTTGGGGGGTAAAAAGTACAACCAGCTGTCTATGGTCAGGCTGGGCCCCTGCTTCAGTCGTTGCCAGGGTACATGCGTGCAGGATGCCGTCAATACTGTTCTGAGCTAAAAAGGGATAGAGAAATGCTTAACTGAATATTCTAATGTACTGTGAATCTTGCCAGTGAATCTTGCCAACTATATGACAAGTTTGTCTAAAATAACTGAACAGTAATTATTTTTTAATTAAGGGAAGGCTATCTGCACTTGAGATGTATCTAGTAATGACTGAAGGCGGGCCCGTAGTGTGGTTGAAAGTGGGAAGAAAGGAACCCTCTTAGGTTTTTTGTAATTCCgtattgttaaaaaaaataaaagtgagCCATGTGAACTAGATGTGGAGGAGTCTCAAACTGGTCAATAATTCCACACATGTTCAATATCTGTTAATGTCAGACACAAACAACCGTACATTACTGGTGAAATTAAGTATTTTAACGTTTTGGGAACTTGCTTATCCAAATATATGAAAGAAAGGCACTTAAATCACAACTTTGTTTTTCACAATGTTTCTAGATTAAAGTCTTGATAAAAATGTTTGGCTTTCTTTAAAGAACTCGATCTGCAATAGCTACTAGGTGTTACCACAAATATTCTAGCTTTAGTAAACGTTGCATGGGTGTGCAGCTTTTAATCTCTTCGTTAAGACTGTCACATTCAGTTTTTCTAAAGGATGATAACCATGAATGTATATTTCTGTGATGTTTTTATAGAAAAGCTGTGACTTGAATAAAGCTGTGACTTGAATAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU275659 lncRNA upstream 13015 27698462 ~ 27702028 (+) True G241246
TU275624 lncRNA upstream 70255 27643884 ~ 27644788 (+) True G241213
TU275619 lncRNA upstream 76752 27638077 ~ 27638291 (+) True G241208
TU275618 lncRNA upstream 77044 27637766 ~ 27637999 (+) True G241207
TU275616 lncRNA upstream 78272 27636538 ~ 27636771 (+) True G241205
TU275683 lncRNA downstream 10353 27734147 ~ 27734398 (+) True G241268
TU275688 lncRNA downstream 15701 27739495 ~ 27739873 (+) True G241273
TU275689 lncRNA downstream 16209 27740003 ~ 27740291 (+) True G241274
TU275698 lncRNA downstream 25973 27749767 ~ 27749972 (+) True LOC110516993
TU275707 lncRNA downstream 38095 27761889 ~ 27762108 (+) True G241287
XM_021581685.2 mRNA upstream 18413 27683075 ~ 27696630 (+) False dhdds
XM_036963393.1 mRNA upstream 18413 27683075 ~ 27696630 (+) False dhdds
XM_036963408.1 mRNA upstream 18413 27684322 ~ 27696630 (+) True dhdds
NM_001159336.2 mRNA upstream 18421 27683767 ~ 27696622 (+) False dhdds
XM_021595210.2 mRNA upstream 122130 27588215 ~ 27592913 (+) False si:dkeyp-97a10.2
XM_021595256.2 mRNA downstream 1395 27725189 ~ 27749968 (+) False LOC110516993
XM_036973735.1 mRNA downstream 23183 27746977 ~ 27749968 (+) False LOC110516993
XM_021595261.2 mRNA downstream 102406 27826200 ~ 27874137 (+) False slc9a1a
XR_002472501.2 mRNA downstream 102406 27826200 ~ 27874137 (+) False slc9a1a
XM_036973737.1 mRNA downstream 164442 27888236 ~ 28091436 (+) True LOC110504004
TU275557 other upstream 156511 27556172 ~ 27558532 (+) True G241150
TU275097 other upstream 450650 27256588 ~ 27264393 (+) True LOC110516767
TU274539 other upstream 663089 27051186 ~ 27051954 (+) True G240244
TU273986 other upstream 1386712 26327408 ~ 26328331 (+) False G239752
TU273987 other upstream 1387018 26327408 ~ 26328025 (+) True G239752
TU275657 other downstream 23553 27747347 ~ 27749726 (+) False LOC110516993
TU277370 other downstream 1307917 29031711 ~ 29034714 (+) True LOC110517275
TU278253 other downstream 1944585 29668379 ~ 29690796 (+) True G243679
TU278893 other downstream 2408605 30132399 ~ 30137564 (+) True G244292
TU279342 other downstream 2907976 30631770 ~ 30632533 (+) True G244691

Expression Profile