RNA id: TCONS_00028834


Basic Information

Item Value
RNA id TCONS_00028834
length 735
RNA type mRNA
GC content 0.46
exon number 5
gene id XLOC_014586
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 10299002 ~ 10324573 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAACGAGCTACACTTAACCTCAATCAATAAGGACTATTAGCTCAATTTGAGTATCAGGAAATACATCTAAACGGCTAATCGTTATAACGAAATGGTTAAATCTTAAACATTATCGACGCAAGCCTTTTATTCGTGCTCCGCAGTGGTTCCGTTTAGCATTAGCTGCTAACAACCTTCTCAAGCAAAGCGTTTATTTCAACCTCTGCGCAAATAACGTTATAGGTGTATTTCGGCAAAGTCTTTATGCTTGtgttaaatttttaaaacatctGCGTTTTATAGTTGGTCTCCTGTAATAGCGTGTGACGGGAATAAAGCTATCTAAGGAAAACGGCGTGTTAGCTGAAGTTTGATCAAAACACCAGGATGTCTGATTTTGATGAATTTGAGAGACAGCTGTCTGAAAATAAACAAGAGAGGGACAAGGAGAACCGGCACCGGCGACGCAGTCCGTCCCGCAGCCGCAGTCGAGAACGGAAGAGAAGGAGCAGAGAGAGGAGAAGCAGGGAGCGCCGCGGTGACAGCAAGGAACGCCGACACAGACGCAGCGATCATACACAGAACCACCCCCAAGAAAATGTCAGCCGTTCACCTCACCgggagaaaaagaagaaaattaaGAAGTACTGGGATGTCCCTCCTCCAGGCTTTGAGCATATTACTCCAATGCAGTATAAGGCAATGCAAGCTGCTGGTCAAATCCCCGCTACCGCTTTGCTGCCCACCATGACGCCA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0089701 U2AF complex cellular_component
GO:0005634 nucleus cellular_component
GO:0016607 nuclear speck cellular_component
GO:0000243 commitment complex cellular_component
GO:0071004 U2-type prespliceosome cellular_component
GO:0008187 poly-pyrimidine tract binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0030628 pre-mRNA 3'-splice site binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1881 Predicted to enable poly-pyrimidine tract binding activity and pre-mRNA 3'-splice site binding activity. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of U2-type prespliceosome; U2AF complex; and commitment complex. Predicted to be active in nuclear speck. Orthologous to human U2AF2 (U2 small nuclear RNA auxiliary factor 2).

Ensembl:

ensembl_id ENSDART00000151352

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029757 lncRNA downstream 403861 9904324 ~ 9906939 (-) True XLOC_014578
TCONS_00028805 lncRNA downstream 627292 9676517 ~ 9683508 (-) True XLOC_014572
TCONS_00030166 lncRNA downstream 701288 9594867 ~ 9609512 (-) False XLOC_014570
TCONS_00030167 lncRNA downstream 701425 9605861 ~ 9609375 (-) True XLOC_014570
TCONS_00030165 lncRNA downstream 850471 9457546 ~ 9460329 (-) True XLOC_014566
TCONS_00028866 lncRNA upstream 534940 10859122 ~ 10860449 (-) False XLOC_014603
TCONS_00028865 lncRNA upstream 535012 10859194 ~ 10864799 (-) False XLOC_014603
TCONS_00028870 lncRNA upstream 551551 10875733 ~ 10876830 (-) False XLOC_014603
TCONS_00030168 lncRNA upstream 895579 11219761 ~ 11227568 (-) True XLOC_014612
TCONS_00028909 lncRNA upstream 1810609 12134791 ~ 12138739 (-) False XLOC_014624
TCONS_00028830 mRNA downstream 3890 10300936 ~ 10306910 (-) False XLOC_014586
TCONS_00028827 mRNA downstream 15627 10255223 ~ 10295173 (-) True XLOC_014585
TCONS_00028826 mRNA downstream 24572 10252052 ~ 10286228 (-) False XLOC_014585
TCONS_00028824 mRNA downstream 67652 10217598 ~ 10243148 (-) False XLOC_014584
TCONS_00028823 mRNA downstream 96535 10206515 ~ 10214265 (-) True XLOC_014583
TCONS_00028836 mRNA upstream 1178 10325360 ~ 10330778 (-) False XLOC_014587
TCONS_00028837 mRNA upstream 1185 10325367 ~ 10330831 (-) False XLOC_014587
TCONS_00028838 mRNA upstream 1960 10326142 ~ 10330826 (-) True XLOC_014587
TCONS_00028839 mRNA upstream 32163 10356345 ~ 10360188 (-) False XLOC_014588
TCONS_00028840 mRNA upstream 32164 10356346 ~ 10373630 (-) True XLOC_014588
TCONS_00028825 other downstream 68689 10238453 ~ 10242111 (-) True XLOC_014584
TCONS_00028819 other downstream 187453 10123233 ~ 10123347 (-) True XLOC_014581
TCONS_00028818 other downstream 298186 10012498 ~ 10012614 (-) True XLOC_014580
TCONS_00028791 other downstream 1458145 8852540 ~ 8852655 (-) True XLOC_014556
TCONS_00028774 other downstream 2485267 7825395 ~ 7825533 (-) True XLOC_014543
TCONS_00028853 other upstream 312187 10636369 ~ 10646822 (-) False XLOC_014597
TCONS_00028860 other upstream 367984 10692166 ~ 10730478 (-) False XLOC_014599
TCONS_00028862 other upstream 381277 10705459 ~ 10705475 (-) True XLOC_014600
TCONS_00028867 other upstream 535035 10859217 ~ 10860466 (-) False XLOC_014603
TCONS_00028885 other upstream 869067 11193249 ~ 11193363 (-) True XLOC_014611

Expression Profile

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