RNA id: XM_021595256.2



Basic Information


Item Value
RNA id XM_021595256.2
length 694
RNA type mRNA
GC content 0.56
exon number 4
gene id LOC110516993
representative False

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 27725189 ~ 27749972 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTGTACAGAAGCTATGCATCTGAGGTACTTATAGCATGGCCATGTTCGGGAGGGTGAGAGGGTAGTGGTGACTGATGAGGACTTCAGACAGGAGGGACGGGGGTTGAAAGCTGTTTGTGTACGGTCAATAATGCAGAGATTGACATGAGCCCTGTCCAGGAGGATGAGGGACCCAACTCAGTGTCTCAGCTGGCCAAGagaatgcaGGGTGCCGGGGCTAAAGGCTGGAACAGGATGTCAGCACTCTTCAACAAAGAGGATGAGCACCAGCTATTGGAGGAGAATGAGAGCCCGCCTGTCCCAGACCATCCACTAGCAGTGATGCCTGAGGAGCCGCAGAGACCGGCCAGACCCTCAGGATTCTGGGGTAGCTTCGCCACCAACTGGAAACAAATGGCCACTGCGAAACAGGCTGAAGCCGCAGCAAACGAGACAAGCACAGTGGAGGAGGGTCAGGAGGCGGTGGGAGAGGGAgctggtgagggaggagggggggagagttACCAGGGGGAGAACGCGGAGGGAGAGCAGAgtcaagatggaggaggagggagcaaCACTAGCTTCTCCAAATACGCCATGCTGGGAGGAGGGAGCGAGAACACACCCTTCAAGTGGAACTTTGTCACAGGCAAGCTGGCTGAGTTGAAGACCAAGAGCATGTCTGGCCAGCAAGACTAACAAGCCAGCTGTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU275659 lncRNA upstream 23161 27698462 ~ 27702028 (+) True G241246
TU275624 lncRNA upstream 80401 27643884 ~ 27644788 (+) True G241213
TU275619 lncRNA upstream 86898 27638077 ~ 27638291 (+) True G241208
TU275618 lncRNA upstream 87190 27637766 ~ 27637999 (+) True G241207
TU275616 lncRNA upstream 88418 27636538 ~ 27636771 (+) True G241205
TU275707 lncRNA downstream 11921 27761889 ~ 27762108 (+) True G241287
TU275718 lncRNA downstream 37005 27786973 ~ 27787477 (+) True G241298
TU275916 lncRNA downstream 79339 27829307 ~ 27829636 (+) True G241485
TU275914 lncRNA downstream 118882 27868850 ~ 27874135 (+) True slc9a1a
TU275952 lncRNA downstream 143867 27893835 ~ 27923322 (+) True G241516
XR_005042471.1 mRNA upstream 1395 27705985 ~ 27723794 (+) False LOC110516984
XR_002472494.2 mRNA upstream 1395 27715014 ~ 27723794 (+) False LOC110516984
XM_021581685.2 mRNA upstream 28559 27683075 ~ 27696630 (+) False dhdds
XM_036963393.1 mRNA upstream 28559 27683075 ~ 27696630 (+) False dhdds
XM_036963408.1 mRNA upstream 28559 27684322 ~ 27696630 (+) True dhdds
XM_021595261.2 mRNA downstream 76232 27826200 ~ 27874137 (+) False slc9a1a
XR_002472501.2 mRNA downstream 76232 27826200 ~ 27874137 (+) False slc9a1a
XM_036973737.1 mRNA downstream 138268 27888236 ~ 28091436 (+) True LOC110504004
XM_021595273.2 mRNA downstream 402446 28152414 ~ 28163374 (+) True LOC110517041
XR_005042478.1 mRNA downstream 425872 28175840 ~ 28253748 (+) False myom3
TU275655 other upstream 1395 27715043 ~ 27723794 (+) True LOC110516984
TU275557 other upstream 166657 27556172 ~ 27558532 (+) True G241150
TU275097 other upstream 460796 27256588 ~ 27264393 (+) True LOC110516767
TU274539 other upstream 673235 27051186 ~ 27051954 (+) True G240244
TU273986 other upstream 1396858 26327408 ~ 26328331 (+) False G239752
TU277370 other downstream 1281743 29031711 ~ 29034714 (+) True LOC110517275
TU278253 other downstream 1918411 29668379 ~ 29690796 (+) True G243679
TU278893 other downstream 2382431 30132399 ~ 30137564 (+) True G244292
TU279342 other downstream 2881802 30631770 ~ 30632533 (+) True G244691
TU279535 other downstream 3115598 30865566 ~ 30874608 (+) True G244851

Expression Profile