RNA id: XM_036973737.1


Basic Information

Item Value
RNA id XM_036973737.1
length 4709
RNA type mRNA
GC content 0.47
exon number 12
gene id LOC110504004
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 27888236 ~ 28091436 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCTGCTGGTCCTCCCTTCGACTGTTGATTCGTATTTCTTTGCGGTGTCTCCAGCAAGAGAGCCCGACCAACCCACTCGGTTTAGCAACAGTATTCGTTTCACTCTAGCCTATATTTGATGATCtattctttctccccctctgcgCTGATGGCGAGCAAGCGGGCGAACACTGTACAACAAGGGTGCGCACGAGAAGACAAGCCATAGACTGCGGGTGGAAGACACGATGTGTTGATGGGATTGAACTGCAAGCGGCACTATTTCTCTTGGATGGTTGTCTTTTAGTCTCCATTCGACGGATTTTTGGAAGCTAAAACAAATTCGTGCGCGTATGCGACACCGTATTCGTTCACCTTCGCTGTGTGGGTTGTGTGCTGCGTATTCAGATATGATGAGAGACTGAAGAACGTGCCTATTTCTAACGGACGGTGGCGGCATGAATAAATATACACGTTCATACAGCAGCAGCATCCCCCTACCTTACAGGATACAAGACCAGATGCTTGGGTTTCTTCGGTTTTACACATCATTCTGTGACCTGCAACGGGGACCGCTATGAACGAACCTGCCGATAAAGACGCTCTACGCATGCTTTTACCATCCGGTGATGTTTTTGTTCAATGATGGGCACGCCTTGGAATAATGAAGATACGATCAACTTTACTTTGGCTTTGTGATGGGTGCATTTTAGGATCAATAGGCTACGTAAAGTAACGAAACGTCTGTCATTTTAGCGTAGATTCCGCATATTCCGTTATTTTACATCCAGGATTTATTATAAACCTGTATTTTTCTTTGTGAATGTGAGATATTGAACAATAGAAAACTTAAAATGCCTATGCTATGACTGTCATAACCTATACCTGCTAATGTAAGCCACACGTTATTGATCTCATTGCCAAACGTGATCGCAAAATTTGAAAGGTAAACTTTACCTATGCAGGTCCAATCGACTGCACGATAAGGAGAGTTGTGGCAATCAGTTTGTCACGGGGGTGTGTTTTTCAGCCCCTCATATCAACTTTTACACATGAAACAAGACACATAGGGAAACTTCCCAGCAGAGATAGTGTTAGAGTGGAGTGTTGTACAACCATTGTAGCCTATAGACTACTGCTGAATAAGTTAAGGCAATCATAAAGAAAAACAATTTCAATGGTTTTCCGAAAGTTGCCCGGTGTGTCAGCATCGGGCATGGGTCTTCGCCTATCCCAGAAATTCGTCTTTCTACTTTTTCTCTCGGGCTTGGTAACTCTGTGTTTCGGGGCCTTATTCTTCTTACCTGACTCTGTCCGTTTGAAACGTATTTTTCTCTCAAAGACGGAGAGCCAACCAGTAACGGTAGGGTCTGAGAATGATGTAAGGGAGCATCTTAAGAAGGGCGCAAAGGACCCAGAACATCTCCGGGGCATCACCTCGGCCAAAGGGGAGACGAGCACAAAACTCAAAGCCTTGAGCCGCAAGTCCTCTGTCACCAATGAGGCTAAAACGGATAAGAAAGTCGCTGGCGGGGAAGCGTTGGAGGACATGATGCTGTCGAGGTCTAAAACGGACTCGGCTTCTAAGGATGAGAAAGTGACCTCGTCTTCTAACCAGGGTGCCAACACGGATACTTCTTTCGATTACAACAAGTTTCAAAAATGTCTGCTAAAGCCGCACTTGGGGATCGAACATGGCAAGCCGAGCGACCCTCAGACCCTTCAGCGTCGGGAGAAAGTCAAGGAGATGATGAAGTTTGCCTGGGACAACTACAAGAGCTTCGCCTGGGGCAGGAACGAGCTACGGCCCCTGACCAGGAATGGCCACATTGGGAACATGTTTGGTGGTTTGAGGGGAGCCTCCATCGTGGATTCTCTGGACACGCTGTATATCATGGGATTAATGGACGAATACAATGACGCAAAGGAGTGGGTGGAGACCAGCCTTGACCTGAACTCGAACGGCGAGGCTTCTCTCTTCGAGGTGAATATCCGTTACGTCGGTGGGCTGCTCTCTGCGTACTacctgacaggagaggagATGTTCAAGCGGAAAGTGATGGTGCTTGGGGAGAAGCTGCTACCGGCCTTCAACACACCAACAGGTATCCCACGTGGAGTCATCAACCTGGGCAGTGGCACCAGTTGGAGCTGGGGCTGGGCGTCAGCCGGGAGCAGTATCCTGGCGGAGTTTGGAACCCTGCACCTGGAGTTTGTCCACCTATCAGAGCTCTCCAACAATGGCATCTACACAGAGAAGGTTATGAATATCCGAAAGCTGTTGAACAAAATCGAGAAGCCTCACGGTCTCTATCCCAACTTCTTGAGTCCCGTCAGTGGCAACTGGGTCCAACATCATGTTTCCATTGGCGGCCTGGGGGATAGCTTCTACGAGTATCTGATCAAATCATATCTGATGTCAGACAAGACGGACGAGGAGGCTAAGAAGATGTACTACAGTGCTCTGGAGGCCATCGAGGCTAACCTGGTGCAGAAGTCCCCTGGTGGGCTGACCTACATGGCGGAGTGGAGGGGGGGCATCCTGGACCACAAGATGGGCCACCTGGCCTGCTTCTCCGGGGGCATGGTGGTGATCGGCGCGGACGACGGAGCTCCAGAGAAGAGACAGCACTACCTGGACCTGGCTGCAGagattacgcacacctgccatgAGAGTTACAGTAGATCTGCTACGAAATTAGGGCCCGAGGCATTCCGATTCGACGGCGGGGCAGAAGCCACGGCGACCAGACTGAGTGACAGATACTACATCCTGCGGCCGGAGGTCATCGAGAGCTACATGTACATGTGGAGGTTGACCCATGACCCCAAGTACCGGGAGTGGGGCTGGGAGGCAGTGGAGGCTCTGGAGCAACACTGCAGAGTCGAAGCTGGTTTCTCTGGGATCCGAGACGTGTACGCCCAGACAGTCAGCCACGATAACATGCAACAAAGCTTTTTCCTCTCCGAGACACTCAAGTATCTATACCTGCTCTTCTCTGACGATGACCTACTGCCTCTGGAGGACTGGGTGTTCAACACGGAAGCTCACCCCCTGCCCGTCGTCCGCAAGAGCTGcctacagggggagggagggacacacgACAAGACAACCTCGGAGTAGCAGCCTGCTGTATAACCACTGCACAACTCACCTGCATACAGACACTGAATAACACGTATTCTTACATCACAtgcatacaacacacacacatagacacacacacagacccacacaggaCAGCATTACACACAggtaacaacaacacaacaaaatgcagGGCCCACGTCCCTTGGGCCCTGTTACAGACTCTCAATTCCTTTCCAGTAAAGGATCTTGTCGTATACGCTGTGATTGTATAATCTTGAGCCGGGTCGGGACTACTTCCTGCCGGCGTTACTTTCTGTGGACAATCAGGACGAACATGATTTTCATGAAAAGAGCACCtttttttctttccttctttcctctgTGAGGAAACCAAGAGTATCTTGCAGACCCAAATGTAATGGGAAGAGTGCTGTATTATGGgccatattgagagagagagagagagagagaaccactgAGCTTTTGCTTTGATTCCGTTTTTCACCGCAATCAATTAATGATTTCACCTGATCTTGTCATGGCttttcttctctgtctctttgaccaaagttgtttgttgttttgttcaccCCCTCACAATTCCCTTAACACATCCTTTTTGTGGTGAGGTTTGACAGACGAATAGGGAGGGATGAATGGTGTTGAATATTAAATGTATAGACAATTGTGAAATGTAATACTCAAAATCCACCTTGAAAATGATTTTTTATTCAGAGTTTCCTGGCAGAAACAGGTTAATTGAATAATAACAGGCATGGGGAAAAATTGAAAACGGAAGAGGTTGTTGGAGTGTCTTACATGTCCAGGGACCATTTTTATAAATGGTTTGTCTTTATAATTTGTTTCGAGTACAATACTGGTGACATATTTTCATCGGGGCAAGTCTGCGTTGAATCCTCCTTACCCTCTTTCAGAGCGTAGCTTCACATTGTGTGAGTCCTGTGACTTTAACACAACTGTCAGTCCTGTTACTGTAACACAGGTGTCGGTCCTGtgactgtaacactgtaacacaagTGTAAGTCCTGTTACTGCAGCACTGTAGAACGAGTGTCAGTCCTGTGACTCCAACAAGTGACAGTCCTGCTACTGTAATACAAGCACTCACAACCATCCCAGAGGCAAGATCACCACAGCTAGTCTCAGTCGCTTACTATGACTGGGCTCAAATATGCTTGCCAAAGTTATCAGCCCTCATCGAGAGCTCCAGCTCTCTCAAATCCGCAGTGGGGAAAGTTAGGCTTGAAGCTAAGGGTTTCCTAAAAATGTATTTCGTAGAGGGGAATGTGAATGGCGCTTTCCTATTTCATCCTTATTCGTATCATCACTGCTGTCCAATGCAGAGAGAATGTGCTGTACATACCTGGATGAATGTAAGGGTCCCCTGTATTAGCTTGTCTTCAGTTTCCTTTGTGATTTATTTGACTTGATTATGTCATTATTTTCATTGCTTTTTCATTTTGCTTCCCTCAGGTGTTTCTGTAAAAGAGGAAAAAACGTTTGACTAATTATAGTTCTGGTTGATATGAATTATTGTTATTACTTATCTTTCATTGTTGAATATTTTCAAATACTGATAAAAGACCTGTGCAACTTTGTACATTTAAAGCAAATTCA

Function

GO: NA

KEGG:

id description
K01230 MAN1A_C, MNS1_2; mannosyl-oligosaccharide alpha-1,2-mannosidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU275914 lncRNA upstream 14101 27868850 ~ 27874135 (+) True slc9a1a
TU275916 lncRNA upstream 58600 27829307 ~ 27829636 (+) True G241485
TU275718 lncRNA upstream 100759 27786973 ~ 27787477 (+) True G241298
TU275707 lncRNA upstream 126128 27761889 ~ 27762108 (+) True G241287
TU275698 lncRNA upstream 138264 27749767 ~ 27749972 (+) True LOC110516993
TU276079 lncRNA downstream 39455 28130891 ~ 28132307 (+) True G241637
TU276168 lncRNA downstream 174249 28265685 ~ 28267282 (+) True LOC110517101
TU276195 lncRNA downstream 279451 28370887 ~ 28371228 (+) True G241747
TU276197 lncRNA downstream 282407 28373843 ~ 28374141 (+) True G241749
TU276198 lncRNA downstream 282841 28374277 ~ 28374624 (+) True G241750
XM_021595261.2 mRNA upstream 14099 27826200 ~ 27874137 (+) False slc9a1a
XR_002472501.2 mRNA upstream 14099 27826200 ~ 27874137 (+) False slc9a1a
XM_021595256.2 mRNA upstream 138268 27725189 ~ 27749968 (+) False LOC110516993
XM_036973735.1 mRNA upstream 138268 27746977 ~ 27749968 (+) False LOC110516993
XR_005042471.1 mRNA upstream 164442 27705985 ~ 27723794 (+) False LOC110516984
XM_021595273.2 mRNA downstream 60978 28152414 ~ 28163374 (+) True LOC110517041
XR_005042478.1 mRNA downstream 84404 28175840 ~ 28253748 (+) False myom3
XM_021595286.2 mRNA downstream 84404 28175840 ~ 28254021 (+) True myom3
XM_021595306.1 mRNA downstream 163715 28255151 ~ 28256509 (+) True LOC110517089
XM_021595314.2 mRNA downstream 174155 28265591 ~ 28269842 (+) False LOC110517101
TU275657 other upstream 138510 27747347 ~ 27749726 (+) False LOC110516993
TU275655 other upstream 164442 27715043 ~ 27723794 (+) True LOC110516984
TU275557 other upstream 329704 27556172 ~ 27558532 (+) True G241150
TU275097 other upstream 623843 27256588 ~ 27264393 (+) True LOC110516767
TU274539 other upstream 836282 27051186 ~ 27051954 (+) True G240244
TU277370 other downstream 940275 29031711 ~ 29034714 (+) True LOC110517275
TU278253 other downstream 1576943 29668379 ~ 29690796 (+) True G243679
TU278893 other downstream 2040963 30132399 ~ 30137564 (+) True G244292
TU279342 other downstream 2540334 30631770 ~ 30632533 (+) True G244691
TU279535 other downstream 2774130 30865566 ~ 30874608 (+) True G244851

Expression Profile