RNA id: XM_021595321.2


Basic Information

Item Value
RNA id XM_021595321.2
length 3317
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC110517114
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 28275767 ~ 28280077 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCCCAGCTTCCATTTTGTTGCAAATCAGACAGTCGAGAGGGAATAGAGATATACACACATTTCTAGATATAGAAATTTCTACATTCAGAGAGttcagacgtcaattcaacaatctctgacaaagggTTTTTACCAACTAAGCCTGAGGAAGTCGATCGGCTTTGAGCATATTCGTGCGCTGAAGTGAATTGATGTTCTACTCGGCTTCACGGGAAAACGACGCTCATTGGCACATGACAACTCCAGATCTTGCTGGACCTAAAAGTGCAGCGAGAAGTAGACCGAAGACTATTTCGAGGACCTGGAGCCCAATTGGAAAGGAGAAATTAAGAAGGAAGCATCTCTGCACATTCAACTTTCTAATAACAAAGAGGTGACACATAGTCTAGGAAGTACAGtatgggaggtggagagaggtacaACATTCCAGTGTCCCACCCAGAGCGCCCATTGCCCAAGAAGAACCATCAGCTGGGCCGGGCCAAGCAGAGAGTTGTCCGCGATCAGAATGGAGTGACAACCGTAGCATCCTCGGGGGCGGCGCGAGGTCCTCACCAACATGGCCACCGCAAGGGCGCAGCCTACCCCTGGTTCCCAGAGGCGCGGCTGGCCGCGTCGGCTGAGAAGATAAACACTTCTGTCCGTTTTGCCAACGCCTACGATCAGAATTGGGAGGGCGCTGTGTCCCACCTGAACACACTTCTGGCCGCCCAGTGTGGCGGCCCGAGCTATGCAGGGGCCAAGTTCAGCGAGCCACCCTCCCCCAGTGTGCTGCCCAAGCCCCCCAGCCACTGGGTCCCCATGGGTATGCGTGACAGCAGGGAGATGATGGCCTTCCAGCTGAAGAGCCTCCTCAAGGTGCATGCCTAGAGATGGACTCTCATAACCTGACCTTTCAAAGCCAACGTGTGAACGAAGGCTCCTGCCTGCCTTGAACGCCCCAGCGCTGTAATATACTTTTGGCTATTTTAGGTTGAGGTGTTCGAAgggtggtaggcatgttgtaggGATGTCTCTGCAGCTGTTTGTCacccttttttctctcttttttgaGAAACACAGGTATTACAGCGCTGCAGCCTTGTTGGTGGGGGAGAATGCTCTCATTGGAGTCTGTTTCTGTCACTAACGATGAACTGGATATCATTCGTATTTGTgctctgttttgttgttttttttgttggccGTTATAGCAAGTCTGTGGGCTTTTCTTCCCAAACGGTAAGGTTGGATACAGTTAGTAATAACATGTTAATGCAGTCTCATTTACAGTCCATTTTTGTGGACCGGTAATTCTTTGGCACGTTAAGTTCTGTTAATCATTAAGGATTTCACCTCTGACAACCTGGTGCTACCTGAAGCACAATCTACAATAGTAGCATTTTCTTTCGTTTGACTTactgttttccctctggtttgggaggggggggggggtgtaaaaatCCACTGTTCTGCAGGGAAACCAGAGCTATCTTTCAGGAGGGAATCCGCTGTAGTAGTGAGTACAGGTCACAAGTATAACCTCAAACTGAAGTGTAGAGGCCATGGCACACAGGCCTTGGACGTTCAACTCCTGTACTTTTTTATTGCGCTGTGCGCTCTGCACTATGGCAGTTGTTCTGGTCCAAGGCCTGCAGCTCTATCATACAATTATTTTGTCTATTTGTGATGTGGTTATTAATCAATGAGTCAGTTTTGTCTTAACCAAACGAATGTCTTTTGCTGTcatttttttcaccatctctcccTTGTATGTCTGACGTGGTTACCAGTGCCATATCAACCACGTTGGCTTGCGTGGCACAGAGAATTTGGTCCTCTGGGTCACTTTTTTTCCCCCAACGCAATCAGTACTGCTATTAGCCACTTTCAAACTATCTCGTTCCCTACCGAAACCCCACACAGTAAACAATGCAGAGGCGGGCCAGATTCAACAGGAACGTGGAACTAAGTTTCACAACCTCAATCTCCTGTGCCATGGCCCTGTTTGCTGTGTGGCAGTTTCTTACGAGGAAGTGCAACGTTGAGAGACGTGCGTGGCACAGAGGACGTTCGGCGCAAGGCCCGTGTGGATCTGTTTACATTTAAAGTCTCCAGCAGCAATCTCCAGATACTCACTGCTTTTGGCACCCTACTCTTCTTGCACTGCAATCAATAATTTTTTTATCTCCCTCTAGGTTCTAATTTCAAGGGAGGCAGTCTTTTCTTTTCTTTGCAGAATGGGAACTGTAATGGCCATCTTAGAGACGACAAAACGGAGCTCACAAGCTTGAAATAAGTTAAAGAAAAAGAGCCATGTAAATAATGAAATGTGTAAAAAATACTTGCAGCATATGTACATTTAGCAGTGTGTTTTTAAACCTGCTTGATAAAGTATTTTTAGTAATAACACTGAATGTATAAGTCATGCTAAGGACATGTCTTGACTTCAAATACGGAATATTTTTGTAAAAAAGAATCTGCCTATAGCATTTGTCAATACCCCTTCACTGTGTAATGTCTAATCTTGCacatgttttttattatttttattatgcACAGTGGATGGCAAAAAAATGCATTGTGCAAAAGAAACTTGGCTTACATTTGACCCTTTGAGGAGACTTGGATATGTATGAATTGTTATATTATTTTAGTTTCCAGGTGTGCTACAGCCTGAAGACAGCTGCTGGGGACTGGTTTCCCAGACAGATTGACCCCAAACCTGGAttaaaacaactatttcaatGGATAGTCTCCATTTGAATGTTGTTTTTTCAGGACTACTTATGATCTGTCTGGAAAACGTGCCCTGAATTGAGTTGTTCTACTTGATTGTGCCTACATTTTAACCCAACATTACAAAATTATGTTGTTGATCGACATTGATTGATATTTTGTGATTAGGTAATGTGATTCATTGaccaaaaaatgttttatctaAAAACCACCTTCAGTTATCTGCTGTTCTTCTGCCAGAAGATAATTGAATTTGGCCCTATGTTATTGTCAACCTGGTTTCATCTGCctttgttttgttctgtgtgtttaaatgcattgtctttttttttttaagaacatGTGTTCTGTTGGTTTCTGTTAATGATTCATACATGTATAAGTCTTTGTCCTAAATTTGAAACTCAAGTGTTTCTCAACAAATTGGCTTTTAATTTGTCCCATTTTGTTTACTGTCACCAATGAATATGAAATTATGCCACATGTCCAGACTTGATTGAatttgacttaaaaaaaaaaaagaacccaAAGCACTGCTTTTATTGGTCTAATCAAAAAGTAAATCCCAAAAAATAAAATCCCTTCCCTTTCCCCCCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU276507 lncRNA downstream 19258 28205275 ~ 28256509 (-) False G242021
TU276497 lncRNA downstream 19258 28254842 ~ 28256509 (-) False G242021
TU276508 lncRNA downstream 19258 28254842 ~ 28256509 (-) False G242021
TU276503 lncRNA downstream 19258 28255157 ~ 28256509 (-) False G242021
TU276504 lncRNA downstream 19258 28255157 ~ 28256509 (-) False G242021
TU276589 lncRNA upstream 17227 28297304 ~ 28306937 (-) True G242092
TU276565 lncRNA upstream 30778 28310855 ~ 28333370 (-) True G242076
TU276619 lncRNA upstream 57306 28337383 ~ 28340093 (-) True G242121
TU276624 lncRNA upstream 89067 28369144 ~ 28369386 (-) True G242126
TU276625 lncRNA upstream 90893 28370970 ~ 28371221 (-) True G242127
XM_021595258.2 mRNA downstream 488287 27769884 ~ 27787480 (-) True si:ch211-107n13.1
XM_021595221.2 mRNA downstream 592850 27659143 ~ 27682917 (-) False ago1
XM_021595369.2 mRNA upstream 63667 28343744 ~ 28352096 (-) False LOC110517198
XM_036973742.1 mRNA upstream 63667 28343744 ~ 28353662 (-) True LOC110517198
XR_002472529.2 mRNA upstream 439463 28719540 ~ 28725294 (-) False LOC110517222
LOC110517244 mRNA upstream 501519 28781596 ~ 28786278 (-) False LOC110517244
XM_021595405.2 mRNA upstream 611343 28891420 ~ 28921524 (-) False rspo1
TU276496 other downstream 19258 28255157 ~ 28256509 (-) False G242021
TU275290 other downstream 1090662 27184660 ~ 27185105 (-) True G240906
TU275055 other downstream 1117103 27155568 ~ 27158664 (-) True LOC110516678
TU274911 other downstream 1163145 27112182 ~ 27112622 (-) True LOC110516667
TU275019 other downstream 1190707 27084340 ~ 27085060 (-) True LOC110516631
TU276998 other upstream 439377 28719454 ~ 28725203 (-) True LOC110517222
TU277045 other upstream 446893 28726970 ~ 28730375 (-) True G242539
TU277105 other upstream 501523 28781600 ~ 28786278 (-) False LOC110517244
TU277309 other upstream 665664 28945741 ~ 28946292 (-) True G242796
TU277694 other upstream 852239 29132316 ~ 29152629 (-) True G243154

Expression Profile