RNA id: TCONS_00028836


Basic Information

Item Value
RNA id TCONS_00028836
length 1753
RNA type mRNA
GC content 0.43
exon number 6
gene id XLOC_014587
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 10325360 ~ 10330831 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTACGTTTATTAACGCTTATTAATACTTGCAAgcgttatataaaatattagttaaatatATTTCAGAAGTAAAGCCACCTATGAAACAGTCTCCCGTTACTCTGTTTAAAAGGGCTAGGGAGACACGAGcaaattaactaatgtttaatTAACTACCTGTTATTGTTAATGACTAATTAACTACTTAGTTGTGCTTGGTTGTTATTAATTACACACGCCGTGCTCCGTGTCACGCATTTGCACGGTTTATGTGTTTGGTGTTGGTTAGGTCTGAAGCtgttttttcctccttttttgaGCGAGTTCATGTTTGGTTGCAGGTTTGTGAATATCAGGCAGGTCCATGTGACTGATGTCATCATGACGGATGCACAGAGAAGCACAAGGAGCTCCAGAGGTTTGAAGAATGAAAATGGCTATGAAATCTCTATCCCCTTTGAGGACAGCAACCTGGATGATTCGGGTTTCTATAGTCCAAATGACCACCCGTTTGATGAGTCCGCATCGGGTTCCATTCCTCCTTGCAGTCCATACCTTCTGATCACCAGCCTCCGAGCTCAACTGCAGATCTCTCTGGAGAAGAACTCCTGGCTTCAGAAACGCATTGAAGATCTGGAGGAGGAGAGGGACTTCCTGCGCTGCCAACTTGACCGATTTATTTTCAACACCAAGAGTCGGGAGTGCAATGGCACTTTGGAAAAAGgAACTGAAGCAGAGCACATGCAGCAAGCCACTGGCCAGAAGCAGCCTATCAAGCTTTCCACAAGGAAAACATCCACTCCATCACCCATGATGACACGCTCTGGAAAAATCCCTGTTCGCAGCCAGAAGCGAAGCAGAAAGAACAgtcaggaagaagaagaagaggaggaggtgaTTGAAGAGGAAGAGTATATAGCGGAGGAAGATTATGTGGAAGAGGAACAGCTCATTACAGATGACGATGGTAACATTTCAGAGGATAAAACCTCACGTAAAAGTTGTACAGGCAGGCTGAGTGGCCAAATGAGGGTGAAACGACGACGCGTCTTCCGTTTCGCACGAAGCATGGAAAGACAAAGGGTGAAAGACCCTGCTGGTGTTCTGCTCCGCTACAATAAGATCCTCGTGACCTATCAGAAGCTGAAGAGCATGTCTAGAGCCTTTCAGGTCCACGGGGTTGACAGAAACACCGTCGCCTCCACTACTCCCATTGCTGAAATGCTCTTAGTTGCTCCTGAGAAGTTGTCTGAGGTTGGAGAGTTTGATTCCTCCAAGGAGAAGCTTCTGGATTATGCCAGACGCTGCTATAAAGCTCTTGATGAGGAAGCTCACGCAAAGGTGCAGACCTTGAAGAAAACCAACCTCTTGCTGCCCATTTCCTACAGGTTCAGGCACTGAATTTCCAAAAATGTGTGTCAGTGGTGTTGAAGTTTAAACACTGAACTTTCATGGGCTCCTTTTTTCTACCTCAGTTATAGATTGACACATAAGGAGTGAAGTCCCAACTATGTGCCAGTTATTTATGCTAATTAGACTCCAAAGTTAAAAAGAAATGTAAGATAGTTAGTCAGCCACTGTATATGAGGGGTTACCTTTTCTTGTTTTGTGTATATGCTTGAGTTTCTTGTTGTAAACTTTGGACAACTCACTTTTTGTCCGGGTATCATGTAAGGTAACACTTCGGTTTTGTATACTGATCACACTTCATGCTAAAGgatgttgatttaaaataaagttcATCACTTGCAATCATGCAAAAGAAAGTATAAA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005654 nucleoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050306-6 Predicted to be active in nucleoplasm. Orthologous to human CCDC106 (coiled-coil domain containing 106).

Ensembl:

ensembl_id ENSDART00000081465

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00028835 lncRNA downstream 6398 10313927 ~ 10318962 (-) True XLOC_014586
TCONS_00029757 lncRNA downstream 418421 9904324 ~ 9906939 (-) True XLOC_014578
TCONS_00028805 lncRNA downstream 641852 9676517 ~ 9683508 (-) True XLOC_014572
TCONS_00030166 lncRNA downstream 715848 9594867 ~ 9609512 (-) False XLOC_014570
TCONS_00030167 lncRNA downstream 715985 9605861 ~ 9609375 (-) True XLOC_014570
TCONS_00028866 lncRNA upstream 528344 10859122 ~ 10860449 (-) False XLOC_014603
TCONS_00028865 lncRNA upstream 528416 10859194 ~ 10864799 (-) False XLOC_014603
TCONS_00028870 lncRNA upstream 544955 10875733 ~ 10876830 (-) False XLOC_014603
TCONS_00030168 lncRNA upstream 888983 11219761 ~ 11227568 (-) True XLOC_014612
TCONS_00028909 lncRNA upstream 1804013 12134791 ~ 12138739 (-) False XLOC_014624
TCONS_00028829 mRNA downstream 787 10299737 ~ 10324573 (-) False XLOC_014586
TCONS_00028828 mRNA downstream 1042 10299002 ~ 10324318 (-) False XLOC_014586
TCONS_00028833 mRNA downstream 1122 10310697 ~ 10324238 (-) False XLOC_014586
TCONS_00028834 mRNA downstream 1178 10310800 ~ 10324182 (-) False XLOC_014586
TCONS_00028832 mRNA downstream 1391 10306862 ~ 10323969 (-) False XLOC_014586
TCONS_00028839 mRNA upstream 25567 10356345 ~ 10360188 (-) False XLOC_014588
TCONS_00028840 mRNA upstream 25568 10356346 ~ 10373630 (-) True XLOC_014588
TCONS_00028841 mRNA upstream 45004 10375782 ~ 10394931 (-) False XLOC_014589
TCONS_00028842 mRNA upstream 48470 10379248 ~ 10395683 (-) True XLOC_014589
TCONS_00028843 mRNA upstream 84706 10415484 ~ 10425140 (-) True XLOC_014590
TCONS_00028825 other downstream 83249 10238453 ~ 10242111 (-) True XLOC_014584
TCONS_00028819 other downstream 202013 10123233 ~ 10123347 (-) True XLOC_014581
TCONS_00028818 other downstream 312746 10012498 ~ 10012614 (-) True XLOC_014580
TCONS_00028791 other downstream 1472705 8852540 ~ 8852655 (-) True XLOC_014556
TCONS_00028774 other downstream 2499827 7825395 ~ 7825533 (-) True XLOC_014543
TCONS_00028853 other upstream 305591 10636369 ~ 10646822 (-) False XLOC_014597
TCONS_00028860 other upstream 361388 10692166 ~ 10730478 (-) False XLOC_014599
TCONS_00028862 other upstream 374681 10705459 ~ 10705475 (-) True XLOC_014600
TCONS_00028867 other upstream 528439 10859217 ~ 10860466 (-) False XLOC_014603
TCONS_00028885 other upstream 862471 11193249 ~ 11193363 (-) True XLOC_014611

Expression Profile

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