RNA id: XM_036973741.1


Basic Information

Item Value
RNA id XM_036973741.1
length 4333
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC110504005
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 28352198 ~ 28366736 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTTTGATTGAATGTGGATTCATTCCACAGATGGAAAACAATACTGGAAGGACATTGATTGTACAATGAATCAAAGGGATACATCCATCGtgagttgaccccccccccccagtcaaaACTATACATTTTCAGCCTAAATATCTCCAGTTGAAAGGTCACAAAACAAGCATGTGCCCTagcagagatactgtatataatgacgagatgctcttGTCTCCGCACTAACTAGCGGGAAGGCATACGGTCTGTTTATCGGTCTCATTTGAGGTATACATTAAGTTCGGTCTGCTTATCGCTGTATTCCCACagggacagattttgatgggagtGGACCCTCTCGCTTCGTTTCGTCCTCTCTGGCAGTAGCCTACTTGGTCAGCTGACTGCAAAACATCTGACAAGGGTAGAACCAGTCTCGACAGATTGACACCCTGGTTAACCAACTATTATTCGCATCCTATGTACATCGTCCAATTAGATTCGGAGGTGATTGAAGAGCAGGGAAAGGGAAACATAGGGGACCCGAAGATCTGAAGGAGAATATTACAACACACTGGATTTGCAAGTAACATTGGCATTATTGATGCATTTAAACTGTATTTTACGTTTTATTGGCGGTGTGGAAGGATTTTTCGGTAAAAGCAGGATTGCGTAAAACTAATAGGGTGAGGGGGGATTGGGGGAAGCGAGCGTCGTCGGGTCAAAATGTCGATTCAGTACGAAGTGGAACCGCTGGCAGACAGCTACGGGGTAGCGGACTCGTTTCCCAAAGATTTTGGCTATGGAGAAGAGGAGGCCGACATCGAGGATAGCCCAACTCCATCTGACAGCAAACCTAGAATTCTGTTGATGGGTTTACGAAGAAGTGGCAAGTCGTCAATACAGAAGGTGGTATTCCACAAAATGTCTCCCAACGAGACGTTGTTCCTGGAGAGCACTAACAAGATCTACAAGGACGACATCTCCAGTAGCTCGTTTGTCAACTTCCAGATCTGGGACTTCCCGGGTCAAGTGGACTTCTTCGACCCCACCTTTGACTACGAGATGATTTTCAGAGGCACGGGGGCTTTGATATTCGTCATTGACGCACAGGATGACTATGTGGAGGCGTTGGGCAGACTCCACCTCACCGTGTCGCGGGCCTACAGGGTCAACCCTGAGATTAACTTTGAGGTGTTCATCCACAAAGTGGACGGCCTCTCCGACGACCACAAGATCGAGACCCAGAGGGACATCCACCAGAGAGCCAACGACGACCTGGCAGACGCCAGCCTAGAGAAGCTTCACCTCAGTTTCTATTTGACAAGTATCTATGACCACTCAATATTCGAGGCCTTCAGTAAAGTGGTCCAGAAGCTTATCCCACAGCTGCCAACACTGGAAAACCTTCTAAACATCTTTATATCTAACTCGGGCATAGAGAAGGCCTTTCTGTTTGACGTGGTCAGCAAGATCTACATCGCCACAGACAGCAGTCCGGTGGACATGCAGTCTTATGAGCTGTGCTGCGACATGATCGACGTGGTTATAGATGTCTCCTGCATCTATGGTCTGAAGGAGAACGGCAGTGGTAGTGCCTACGACAAGGAGTCCATGGCCATCATCAAGCTGAACAACACCACAGTCCTCTACCTGAAAGAGGTCACCAAGTTCCTGGCGTTGGTCTGCATCCTCCGGGAGGAGAGCTTTGAGCGCAAAGGCTTGATAGACTACAACTTCCACTGTTTCCGGAAGGCCATCCACGAGGTGTTTGAGGTGGGCGTTTCCACACCGTGGACGGGCTCCCAGGCGGCCGGCACGCCCTGCACCAAGGCTGTGACACTCAACGGCATGCCCCGGAGCACTGtctaaacacagacagacagactgacggaGAGATGataggaaaggacagaaagatcTCAAATAAATAGCTGAGGAGGGATCGTGCGGAGAAGACTAATGGATTGGGGTTTTCAGTAAACCAATCATAACTCTTGCACACAGATCCTAAAAATCACAGGAAGAGGACTAGAGCTAAAAATTCAAATGAGTCAGGGCTGAACCCGAAGCTCAGAGGGGAAGGAGGACCGCGAGCTGACAAAGCTAGGATGGAAGGGAAACTAAATGCAGAGATACCAGGAACATTCATACATTTCGTGGGAATGCAAGGCATTGTTTTCCGCTGATCGGCACGAAAACAGCTAAATGAAAGTCCAACTGGACTGGTATACACAAGCAAAAGCGTATTTGGCATTTGGGAACTTTCAGTGAGATAGGCCTCACGTGCTGCAAGTCCCAAGAGCCCTGAGGAAGCTTGGTAATATCGTTGTCTGTTTTAGCTGCTGGTTCATCCATGTGAAGAAGTacttataaaataaaaaaatgaaacattGATGTAACCCTCGATAAGGACAAGAAACTGTAAAGGCTGTGTGGGGATCAGTATAGTTGTGTAACCCTGTGCAGACTTATGGGTCGAAGTCTCTAAGAAATGCTTGGTGTTTATCCAAAATGCACATAGTATGCCACTTTCTCAAGGCCTTACTTAgattgagcttgcctgttgcAAAGTTTCTCTCACTACTCACTTGCCTGTGTGCTGCCCAAGACTTTGCTTCTGGCTTCACTCATTCTGAAGAAAACAGGGTTCCTCAGAGTGCAAAAGGGATTGTAGTGTCTACATTTTTCTGCTTCTGttctgcgcgtgtgtgtgtctggaaaAGAGGATAGTTGGCGTTTATGGATTCACGACTGCCCCATCATGTTGATTTGCCAGTGTCGGCCCTATGCTCCAAGTTGCTGAAGTGTCATACTGTATAATGAATGATATGCCATGTTGGAAaactgagcaaaaaaaaaaaaaaacctgttaCCAGCGGTTTGATCAGTGATGCTTATAGAATCTAGAATGTTGTTTCAGAATCTATCTACAATTTGTTGCAGTTGGATATCGGATTCATTAGAATCTTGCACAGACAAAATATTCTAAATATAGTCTTCTGGAAACACCCCATTGCACTGGCTTATTCTCTTGGCTATCAAATGATGTATGGAGTACAAGCACATTCTAGATATATCTATCTCCCTTATGCATAAAGTAGTCAGTTTAGCCATATTTTCTGACACTCAATCGTAATACTGCCCCGCATGGATGCTTGCCATAGACCAAATGCTACTAACAGCCAATCAACTATGCCAATCTTCAACTAATGTGGGCAAACTCCTACATGTATAACGTCACACGTTCTTTGAGCGTGACCCTTTACCCGAGCAGGTGGAGTCCGATGCCATTAGGAATGagctagtctggtcccagatctgtttgtgccgtctTGCAAAGGCGTGACCATGAATAAAATAGTTGgcaagacggcacaaacagcTCTAGGACCAGTCTAACCAGGAAAGGTCTCTGATGGGATCTGTACATTCCGGTTGTGTGGCATATAGCGACATATCATTTTAATGATGGCTATGATAATGATAAACAGAATGGTGGCAATTAAATGCCGGTCACCACGTCTTCAAACCCTGCCTTACGCGATTAGTCGATTTCATTCACTCATCCGCCATCGACGCCGTCCTGCGCATATAGGACAGAAGCAACGACTTTGGaaatgttctccactgtgctttAGCTCCACTGATGTTGGTCATCATTTCGGTGTCTATACTATATCTATATTAGGTCAGTCTCAAGAGTCACAAGGAGTTGGGCCTTTGCTTCTTGTTTGTCTGAGGAGGTTGGGGTTTAATGCATTGGGCCAACAGATGTGGAGTGTTCTTCGCAGACGAGTTGTGTGGAAGGTGAATTGTTTGTTCAGGTCCAGTTCAGTCACTTTCCAGCACTCAGTGCCATATAGAACAACACTGGTGGATTTAGAATTtggcctttgtgctgttgtcttcaCTTACACATTTGTTGGAACTTTGAAGGTTTCGCTTTCGCTGAGGGTTCTGTTCAAGGACTTTGTCAGTTTTATCACAGCAATCCACACGCAAAACAAGAACCGCAGCATGAAGCCAATATGAAAACCCATTCCAAGCATGTATGCAATGATGTGTCGTCAAGCTAAATTATTCTCAACATAACATTGCTCATTGTATTTCACTGTGGGTAAGGGAGACCAGGTCTAACAATGAAAAATGAATCCTGGGAAAAAAATGACCAAACTGTATTATTCTGCCCTGGATGGAAGAAAGAAAGGTGTTGTTTTTTTGgctgtttgttttgttcattaGATTTTTTGCAAATAGTAGACATTTGGGACTATAGTAAATCCACTGTTGTCAGTTCTGCCAAAGTTTTTATCATTCACATGAAATAAACACTTGCACATCAAAAGCAAA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K16186 RRAGC_D; Ras-related GTP-binding protein C/D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU276168 lncRNA upstream 84916 28265685 ~ 28267282 (+) True LOC110517101
TU276079 lncRNA upstream 219891 28130891 ~ 28132307 (+) True G241637
TU276004 lncRNA upstream 327560 28010311 ~ 28024638 (+) True G241564
TU275971 lncRNA upstream 416267 27935256 ~ 27935931 (+) True G241532
TU275952 lncRNA upstream 428876 27893835 ~ 27923322 (+) True G241516
TU276195 lncRNA downstream 4151 28370887 ~ 28371228 (+) True G241747
TU276197 lncRNA downstream 7107 28373843 ~ 28374141 (+) True G241749
TU276198 lncRNA downstream 7541 28374277 ~ 28374624 (+) True G241750
TU276199 lncRNA downstream 8007 28374743 ~ 28375028 (+) True G241751
TU276206 lncRNA downstream 16416 28383152 ~ 28383992 (+) True G241757
XM_021595364.2 mRNA upstream 8737 28341344 ~ 28343461 (+) True LOC110517184
XM_021595363.2 mRNA upstream 17318 28322929 ~ 28334880 (+) False rhbdl2
XM_021595346.2 mRNA upstream 17318 28323038 ~ 28334880 (+) False rhbdl2
XM_021595352.2 mRNA upstream 17318 28323045 ~ 28334880 (+) False rhbdl2
XM_021595359.2 mRNA upstream 17318 28323045 ~ 28334880 (+) True rhbdl2
XM_021595383.2 mRNA downstream 360204 28726940 ~ 28730399 (+) True pou3f1
XM_021595399.2 mRNA downstream 432497 28799233 ~ 28841059 (+) True LOC110517255
LOC110517275 mRNA downstream 629087 28995823 ~ 29034924 (+) False LOC110517275
XM_021595417.2 mRNA downstream 672732 29039468 ~ 29045846 (+) True LOC110517283
XM_021595434.2 mRNA downstream 681861 29048597 ~ 29083291 (+) False si:ch211-1i11.3
TU275657 other upstream 602472 27747347 ~ 27749726 (+) False LOC110516993
TU275655 other upstream 628404 27715043 ~ 27723794 (+) True LOC110516984
TU275557 other upstream 793666 27556172 ~ 27558532 (+) True G241150
TU275097 other upstream 1087805 27256588 ~ 27264393 (+) True LOC110516767
TU274539 other upstream 1300244 27051186 ~ 27051954 (+) True G240244
TU277370 other downstream 664975 29031711 ~ 29034714 (+) True LOC110517275
TU278253 other downstream 1301643 29668379 ~ 29690796 (+) True G243679
TU278893 other downstream 1765663 30132399 ~ 30137564 (+) True G244292
TU279342 other downstream 2265034 30631770 ~ 30632533 (+) True G244691
TU279535 other downstream 2498830 30865566 ~ 30874608 (+) True G244851

Expression Profile