RNA id: XM_021595399.2


Basic Information

Item Value
RNA id XM_021595399.2
length 2318
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC110517255
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 28799233 ~ 28841059 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCATAGACAGTAGAGCCGGTGAACTCTGTCACTCTTCAGCATTGTACAGTTAGAGGTCTGAGTAGGCTGCAGTGGAAAAGGAACGGGAAAAGTTGTACAGTATAATAATCTGCCCACTGGAGTAGCGACCGGTATACCGGCTGCAATTCTCATCATTTGAATGTCTGGTGACACAGCGCGAGAGGTGGGCTTCGATTGTCAAGTCGCAAAGGTGCATTCAACAGCAGATATAACGTCGGGGATGGAACAAGTCACAATGAGCGACCGGTTCGATTGCGACAACTGCAAGGAGTCCCTGTACGGACGCAAGTACATCCAGGCAGACGGGGGAGAGGGGGACAACCCCTACTGCATCCCCTGTTACGACAGCCTGTTCGCCAACACCTGCGACGAGTGCAAGGAGCTAATCGGCCATGACGCCAGGGAGCTGTTCTACGAGGACCGGCACTACCACGAGCACTGTTTCCGTTGTTTCCGCTGTGACCGCTCACTGGCGGACGAGCCCTTCACCAGCCAGGACGAGGCCCTGCTGTGCAACGACTGCTACTGCAACGAGTTCTCGTCCAAGTGTGTGGCCTGTGACAAGACTGTCATGCCAGGCACAAGGAAGTTGGAGTATGGTGGCTCCACATGGCACGAGGGCTGTTTTATCTGCCACAGCTGTGAGCAGCCCATCGGCTCTAAGTCCTTCATCCCAGACAAGGATGAACACTACTGCGTGTCCTGCTATGAGGATAAGTTCGCCCCGCGCTGCACCCGCTGCAAAAAGgcCCTGGCTAAAGGGGGTGTGACGTATCGGGATGAGCCGTGGCACAAGGAGTGCTTTGTGTGTACGGGCTGCAAGGTGCAGCTGGCAGGGCAGCACTTCACCTCGCGCGAAGACAACCCCTACTGCCTCAAGTGCTTCGGCAGCCTATACTCTAAGAAGTGTGAGGCCTGCAGCAAGCCTATCACAGGTTTTGGCGGAGGGAAGTACATCTCGTTTGAGGAGCGCCAGTGGCACCAGCCCTGCTTCACCTGCACAGagtgctctgtctctctggtggGGGCAGGCTTCTTCCCCAATGGAGACCAGATCCTGTGTCGCGAGTGCAACACCAATAGCAATctatagactacacacacacaccgtatcgCCCCTCTCCTCACACACGCCCGCCTAGTTCAACCCCAGGGCCCCCCTCATCACTGCCAAGGTTGTTAACACAGACCCACAGACTGCCtctcaggtcacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccttgctcaCTAGACCACAGCTCAATCCCAAATCCTCCCCCTGTGTTTTCTGTTGCTTGCTGTCAAATACCAGAGCTAAGCATCAGGCTACTgaagcacagacacagacaaaaatCAGCGAGACTAAAGTTGATCTAACTTGGCAGAGGCATGTTTTCATGACCAAATAGACCTACATTtccttcaactgtatgtatggggTGACTTTTTGGTCAGATTATGTTTGGTTTAACAGAGGGAAAAGTAATGTCTTTGGAACTGAACCGTTCTGAACGTTAGGCGGACAATTTTAAAATGATGTACCAAAGAAATGTAATATCTGCCATCAAATAATTAACTGGTATTTGGGGGGGCGGCGGCGCCATCCATGGATCCGAAATCACCGAAGAATTGAATTCCACTATCGCTACTCCAATGTTCTGTATTAGAGGCTGTAGCATTTTAATATGTGAGGATAACACTGACCAACATGCAAATTGTCCATCGAACATAGTTCGAAATCATACTATTTTGATGTAGTTGCTATCTAGCCTGGAGAGGGGAGATCCACTCCAAGGCTTTCCTTCTCCACAGTAAGTCAtgactatgtaaaaaaaaaaaaagggttatGTGCCTTTTAAAAAAATTGCATACTTTATATGGTATGTATTATCAAACCAAAGAAAAATGCTTCCAGCTATGCAAACTTGCTAGATTTTTGTATGAACGTATCACCGCTAATCAATGAAAGCGGCACTTTGTAAAGCAGCTACAGAACACTGATATTTACTACATGTAAATGTTCGAGTGATTCAATGCTGATAATTGCAGTTTTGTGCATATGACTGTTCTCCTATGTCAATTAGGTTTCAAAGCAGTATTTGCTGTCATGCTTTAGTTGTTACTTACACTATAGCCGTATCATGATTATTTGAAGAGAATAATATGTTGCGGTCATTTGTTTATGCAGTTGTCAAACACTGCTCCAGAAAGTTAATGTCTTTATAGTATACTAAAGAATATGTCCAatagatggagaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K24414 FHL3; four and a half LIM domains protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU277117 lncRNA upstream 3066 28795471 ~ 28796167 (+) True G242606
TU277084 lncRNA upstream 34006 28763953 ~ 28765227 (+) False G242578
TU277086 lncRNA upstream 34006 28764486 ~ 28765227 (+) True G242578
TU277082 lncRNA upstream 35784 28763139 ~ 28763449 (+) True G242576
TU277062 lncRNA upstream 56667 28741896 ~ 28742566 (+) True G242556
TU277212 lncRNA downstream 40365 28881424 ~ 28881637 (+) True G242700
TU277215 lncRNA downstream 42916 28883975 ~ 28884181 (+) True G242703
TU277227 lncRNA downstream 50545 28891604 ~ 28893051 (+) True G242715
TU277243 lncRNA downstream 72673 28913732 ~ 28914028 (+) True G242731
TU277274 lncRNA downstream 83483 28924542 ~ 28924848 (+) True G242761
XM_021595383.2 mRNA upstream 68834 28726940 ~ 28730399 (+) True pou3f1
XM_036973741.1 mRNA upstream 432497 28352198 ~ 28366736 (+) True LOC110504005
XM_021595364.2 mRNA upstream 455772 28341344 ~ 28343461 (+) True LOC110517184
XM_021595346.2 mRNA upstream 464353 28323038 ~ 28334880 (+) False rhbdl2
LOC110517275 mRNA downstream 154764 28995823 ~ 29034924 (+) False LOC110517275
XM_021595417.2 mRNA downstream 198409 29039468 ~ 29045846 (+) True LOC110517283
XM_021595434.2 mRNA downstream 207538 29048597 ~ 29083291 (+) False si:ch211-1i11.3
XR_005042479.1 mRNA downstream 207538 29048597 ~ 29083292 (+) False si:ch211-1i11.3
XR_005042480.1 mRNA downstream 207538 29048597 ~ 29083292 (+) False si:ch211-1i11.3
TU275657 other upstream 1049507 27747347 ~ 27749726 (+) False LOC110516993
TU275655 other upstream 1075439 27715043 ~ 27723794 (+) True LOC110516984
TU275557 other upstream 1240701 27556172 ~ 27558532 (+) True G241150
TU275097 other upstream 1534840 27256588 ~ 27264393 (+) True LOC110516767
TU274539 other upstream 1747279 27051186 ~ 27051954 (+) True G240244
TU277370 other downstream 190652 29031711 ~ 29034714 (+) True LOC110517275
TU278253 other downstream 827320 29668379 ~ 29690796 (+) True G243679
TU278893 other downstream 1291340 30132399 ~ 30137564 (+) True G244292
TU279342 other downstream 1790711 30631770 ~ 30632533 (+) True G244691
TU279535 other downstream 2024507 30865566 ~ 30874608 (+) True G244851

Expression Profile