RNA id: XM_021595470.2


Basic Information

Item Value
RNA id XM_021595470.2
length 5327
RNA type mRNA
GC content 0.46
exon number 10
gene id thrap3a
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 29256335 ~ 29286477 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACCGCCTCTTTCCACTAGTGCTCAGCATAAGAGATGCAGATTGTCTTGCTCTCAATGTGAGTGTGCAATGCTGCTCGGTGCACTACTTTCTCTGCTTACTCTTTATTCCAATGAAAAAACACACGGGGTCCCGCACTCGCTCACGCTCCAGATCTCATTCTCCATCCCACAATAACCGAGAGCGGAACTACCCAAGGGAGTACCAGAATAATAACCGCGAGTTCCGGGGCTACCACCGAGGCTTCCGGAGGCCCTACTACTTCAGAGGCCGAGGGCGTGGTTACTTCCCACGGGGGCGCTTCCagaggggtgggggaggtggctacaacaacaactaccgcCCCAATAACTGGCAGAACTACAGGCAGCACccccaacagcagcagcaacaacaacaacaacaacagcagcagcaacacccCCACAGCCCGAGACGGGGACGATCCCGTACCCCTAAAAAGCGCTCGGGTAGCCCTCGTTCCCACAGCCACTCCAAGGTCTCGGACCGCTCTTCCTCGCCCCGATCCCGGCGTTCCCGCCACTCCTCTTcctcacattcctcctctcccacaCGCAGGTCGGGCTCTGGGTCAGCCACGCAGAACTCTAAGGATGTCAAGGAGGAGCGCTCTGCCTCCAAGGAGGTCCataagaaaggaggaggagaaggagatggcCAGCCCGTGGAGATCACAGGGGTGTCTGCAGGGCCTGATGGGAGCGCTGGTGGGGACAAGCCCAAGGCTAACTGGCAGGGTGTGACAGATCATAGCAACAGCACCAGCCCCAGGGGGTCAAGTCCTCAGGTGCGCTCAGCTGTTATCATTGGTCAGGGCGCCCCAGCTTCGACCCAGTCTAGTCCCTCTCCTAAAAGCACTAATGCTAATGGCTCCAATTCCAATGGTGCCCCCTCATGGCAGATTCAGACAGTGGGCAGTTCACCTTCCACCAAAAGCCCTTCTCAGAAAAGCCCCACACCTGTGTTCTCTGGCTTTGGCTTCTTCTCTAAAGATGACAACCTGTCAGGAGATAAAGCAGCTATATCCTCAGTGTTCAAAAGGTTCTTGGAAGAGCACAATCATAAGAAAAAGCAGTCTGCTTGGGAGAATGGCAGAGAGATGGAAACTAATGATGGGGATGTTGAGCGGGAGAAAGGGAATGGCATGAAGGCCTCTGGGGGCATCTTTGACAGAGAGCCCGACAAAGGGGAGAACGAGAAGTACAAGTACATGGAAGACTTTGACGATGACCGGAACGTGTCGTTGAACAGCTTCATGAAAGCCTCCCCTTTCTTTTCCTGCGATGGCGAGGAAGAGGACGAGGAGATGATACCCAAGTCCCGTCCCAAGGTGCTCCGCAAAGAGCATGCCCGGGAGGACGACGGGTCGCCCAAGCCCAAGTGCAAAGTCACCCTCTCGGCCAGGGAGCTATTTGAGGAGCGCTTCGGCAAGTGGGAGGACCTGGCCTACTTGCAGGCGGCTGCCAAAGACGATGATCTTGATGCCATGGTGGAGGAGATTTACCGTAGCCAGAAGCAGGAGAAGGCCACGGCCATAGCTGCGGCCTTGGCCAAGAGAGAGGCCATAGCGGGCATGCTCAGAGGCTTCTCCCCAGAGAACGTCAGCAAAGACAGGAGGATGGAGAAAGCTGCCTCCAGCCTGTCCCCCATACCCGCACCACGGAGGAACTCTGACCGGGAGATGTTCATGGTCAGGGGGGAGGACTCTCCCCCAAGGGCCTCTGAGAAAAGAGGAGCGGAGTTCAGCGTCAGAATGGATTCCCTCAGAGATGACGTGGCAAGTTCCTCTGGTGTTATGGTTGGTGAGCGAAGGTTATCACGGGATCTTGTGCATCCTACTAAAAAGGAGCAGGAGTTTCGCTCTATCTTCCAGCACATTCAGGCCACACAGTTACAAAGGAGTCCCTCAGAGCTGTTTGCACAGCACATTGTCACCATTGTCCACTACATTAAAGCACAGCACTTTCCATCCAACGGAATTACTCTAAATGAGCGATTTGCCATGTACCAAAGAAGAGCTGCACAAAAAGAAATGATGAAGCCAAGAAAGAGCCCAGAGATACACAGGAGAATTGATGTTTCTCCCAGTGCTTTTAAGAAACACTCTCACCTGTTTGAGGGGATGAAAAGCTCCGGGGATGGCAGTTACAAGGACGAAGGTAAAAAAATGAAGGGTGACTCAATGGACCTTCGTCTGGATATTGAGCGCCGTAAAAAATATTCCACCCGGGAGAGTGATTATAAACAGGATAGGGGGAGAGATTCAGGAGACTCCCCAGAGGCTAGCAGGGAGAGGTCCGCTGAGAAATCCTCCAAGCACCACAAGAAGTCCAAgaaaaacaagaagaagccatctcgctcctcctcttcctcttcttctgccGAATCTCACAGGGGAGGAGACTATCCCCACGAGGAGCCTGAGCCCAAAGACGAAGGCTTTAACAAGGCCAGGCTGGGGCCTCGGGGGGACTATGTCGGTCCCACGGAGAGGGGACGAGGACGCGGAGGCTTTCAATTTAGAATAAGAGGAAGGGGCTGGAACAGGGAAAATGACCAGGGAAACAATTCCAACAGTAATACCGCTAACATTTGCATACCAGTTCACCCTAAGAATGAGGACTGGGACCCAGAGTACACCCCCAAGAGCCGAAAATACTACTTGCATGATGACAGGGAGGGCGAGAGGAAGTGGGTGGACAACCGAGGACGTGGAGGACGGGGGAACTTCCTGCGTGGCAGCAGGGGCCGTTTCATTATCCGGAAGGCCAGCGTTGGCTTACCCAACAACCAcgccaacaacaacagcagcccCAAGTGGACACATGACAAGTTCCAGGTCAacggggggaaggaggagggcgaGCCCCAGGAGGAGGACACAGAGCAggaccacaaagaccaggagaaGTCTGAAGACATGGAAAACACTGAGCAGTGAGGGAgctcagggagagagaaacattgTACCAGCACAGTGGAAATGTTCTACTGTCTCAAGTCATCTGGGTCGTGTTGAAATGGATGAAAACGGACTGAAACGGGAGGAaaggactacctggacttgtccaataacaaacactgtccaataagaaactacctggacttgtccaattaGAAAAGACCCTGCTCACAGCCTATATCCATCACAATGGTTGGACATGGGAGAGCTTTGCccatgcacaaatacacacattagGAATCAATCAGGTCTAACTTTGACACAATATCTTTACTTATCATTATGTTATACCTTTGTCAGGGTATAGCTAACTTGTGTTTTATCTGCTTATAGTAGAAACACTGTTAGACAGTGAACTGCTGTGTTGGAATAGGAAATCTACGTAACCAACCTCTGCGCTTGATAGGTTAGCGTGATGAACAGTACATTGTGGGGTGTTATGCCTCTTAGTACAGGGCTGATGCAACATtgcataacatttttaaaaacatttttatatcTTGACGCAAAAAAGTCACATTTTTACAGAGCATGACAGGAGGATCTTTTTGTGCCTTAGACTTAATAAAATATGTAGGACACATATTTATATAATGAAATGACATTTGAGGCCAAATGGATGAATACTATACTAGAAgataaacattttatttatttattatacgGTAGTGATAAATCGTACACTATTACACAGTAGATATCTTTTTAGACCAGTTTAGCCATCAACTGCAGAAAATACAGTAAGTATACTGTTGACTTTAGCAAGTTTTAGGATTCAACAATGTAACCTACGGATTCAAATACGTAACCTGCTGATTCAAATACATAACATTCAACTACGTAACATGCAACTTTGCAGCATGTTTCTGGATTCTACCAGGCTAAAGTACAGCTAGAGGCAATCGAATCCCCTTTTTACATGACAACTGGGCCAGTGTCTAATGGTCTATATGGTTTAGACCGTATGGTTTATAGTGGTCTTGCTAGTCCAGCATCTTGCAAGTGACCCCTCTGACAATGGGACCAAATTGGGTCAAAGGTTATATTCTACAGACCTGCACTGTGGAGTGAAACAAGATGCTCACAGTCCCCTAGAAGAGCAaacagcagtggtggaaaaatgacCCAATCGTCATcccttaaaagaaaatgactcaagtaaaagttgaaagtcacccagtaaaattctacttgagtaaaagtctaaaagtatttgattttaaatatacttaagtaacaaaagttaattaaaaaaatatatatacttaagtatcaaaagtaaaaggataaataatttaaaattccttatatttatcaaaccagacagcaccctttttttgttttttaaatttatggatagccaggggcacactccaacactcaggcataattAACAAACAAAGCACGTGTTCtatgagtccgccagatcagaggcagtagggttgaCCAGGGGCGGTCTCtagataagtgcgtgaattttaCTGCCCCggctaagcattcgaaatgtaaagagtacttttGAGTTTCAGGGAAAATGTGCAGAGTGAAAAgtccattattttctttaggaatatagtgaagtCAAAATTATAAAcattaaagtaaagtacagatactccccccaaaaaactacttaggtagtactttaaagtatttaaatactttacaccactgggaaaCAGAGACTGTTAAATAAAATGGCATACCCTGTCTGCAAAGTCACAATGGGCTACCTGGGTGTTAATCTTGTCTAGTTTGTTGAGAATCCTCTATTGGATTGTTATATCTTGTACATTTCAAAACTGTTAACTTGGGTTGGGGGTGTGTACTACTTATTAATGGCTCAATTTATAATTATTTGTAGCAATTAATGCTTCCTTTGtatatgaagaaaaaaatggTGATTGATTATATCACGGCATTGATTAGATCATGGCACACTCAATGCTTTGATGTGATAGGTTTTCTCATTGAATGGGGACTTTTCCCCCTTGTACAACGTCTGTTAAGTTTTGATTGCTGAATAGTATGTGTGGGGTGCAACACAGTAAACTTTGGTTGAATATAAAATAAAACAACTTCTAAGGTATTTGAATTTGATCCCCAAAAAATTGTGCTGTTCAATAAAATATAGTTTataaaaaattctagaaaaagtAGACTGTTGCACTATTTGGATTTGTTTGTCTTGCTGTGGGAGGCACTACTCTTTAATGTACATGATAAATGTTGTGGTTGACACTTTCATGTTCAATTCTATGTGGTTGGGGCAATAACTTTTTTAAATGGTTCCTGTAGACAATGTTTTTCAGATGTAAATTAAAAAGAACTTTGGTTAATTTAA

Function

GO: NA

KEGG:

id description
K13112 THRAP3; thyroid hormone receptor-associated protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU277497 lncRNA upstream 26784 29246161 ~ 29246363 (+) True G242974
TU277495 lncRNA upstream 27754 29245110 ~ 29245393 (+) True G242972
TU277492 lncRNA upstream 29304 29243607 ~ 29243843 (+) True G242969
TU277411 lncRNA upstream 77887 29194479 ~ 29195260 (+) True G242890
TU277419 lncRNA upstream 79928 29192726 ~ 29193219 (+) True G242898
TU277414 lncRNA downstream 1301 29287778 ~ 29288682 (+) True G242893
TU277504 lncRNA downstream 2996 29289473 ~ 29289704 (+) True G242981
TU277876 lncRNA downstream 103982 29390459 ~ 29390703 (+) True G243328
TU277894 lncRNA downstream 159356 29445833 ~ 29508364 (+) True G243344
TU277893 lncRNA downstream 160332 29446809 ~ 29448579 (+) True G243343
XM_036973747.1 mRNA upstream 88787 29119767 ~ 29184360 (+) False map7d1a
XM_036973780.1 mRNA downstream 4443 29290920 ~ 29312030 (+) True LOC110517404
XM_036973791.1 mRNA downstream 808699 30095176 ~ 30122574 (+) False LOC110517541
XM_021595545.2 mRNA downstream 821451 30107928 ~ 30122574 (+) True LOC110517541
XM_021595560.2 mRNA downstream 856046 30142523 ~ 30165671 (+) True LOC110517569
XM_021595572.2 mRNA downstream 884282 30170759 ~ 30196394 (+) False LOC110517587
TU277370 other upstream 238433 29031711 ~ 29034714 (+) True LOC110517275
TU275657 other upstream 1523421 27747347 ~ 27749726 (+) False LOC110516993
TU275655 other upstream 1549353 27715043 ~ 27723794 (+) True LOC110516984
TU275557 other upstream 1714615 27556172 ~ 27558532 (+) True G241150
TU275097 other upstream 2008754 27256588 ~ 27264393 (+) True LOC110516767
TU278253 other downstream 381902 29668379 ~ 29690796 (+) True G243679
TU278893 other downstream 845922 30132399 ~ 30137564 (+) True G244292
TU279342 other downstream 1345293 30631770 ~ 30632533 (+) True G244691
TU279535 other downstream 1579089 30865566 ~ 30874608 (+) True G244851
TU279506 other downstream 1631554 30918031 ~ 30919146 (+) True LOC110518244

Expression Profile